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Conserved domains on  [gi|489179815|ref|WP_003089304|]
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MULTISPECIES: monooxygenase PumA [Pseudomonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HmoA super family cl46813
Heme-degrading monooxygenase HmoA and related ABM domain proteins [Coenzyme transport and ...
 46-118 3.92e-03

Heme-degrading monooxygenase HmoA and related ABM domain proteins [Coenzyme transport and metabolism];


The actual alignment was detected with superfamily member COG2329:

Pssm-ID: 481153  Cd Length: 98  Bit Score: 34.20  E-value: 3.92e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489179815  46 AHLQRLERCFRNCPGYLSASLH-PSEDGQHVLNYTCWRSREDCeRAWQAREDAQGPLSAGVWRLGAKSvRFETF 118
Cdd:COG2329   20 EAFAERRELLAEQPGFLGFELLrSLEDPGEYLVVSYWESEEAF-RAWFRSSEHRAAHAKGREILAGPP-RVEHY 91
 
Name Accession Description Interval E-value
HmoA COG2329
Heme-degrading monooxygenase HmoA and related ABM domain proteins [Coenzyme transport and ...
 46-118 3.92e-03

Heme-degrading monooxygenase HmoA and related ABM domain proteins [Coenzyme transport and metabolism];


Pssm-ID: 441901  Cd Length: 98  Bit Score: 34.20  E-value: 3.92e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489179815  46 AHLQRLERCFRNCPGYLSASLH-PSEDGQHVLNYTCWRSREDCeRAWQAREDAQGPLSAGVWRLGAKSvRFETF 118
Cdd:COG2329   20 EAFAERRELLAEQPGFLGFELLrSLEDPGEYLVVSYWESEEAF-RAWFRSSEHRAAHAKGREILAGPP-RVEHY 91
 
Name Accession Description Interval E-value
HmoA COG2329
Heme-degrading monooxygenase HmoA and related ABM domain proteins [Coenzyme transport and ...
 46-118 3.92e-03

Heme-degrading monooxygenase HmoA and related ABM domain proteins [Coenzyme transport and metabolism];


Pssm-ID: 441901  Cd Length: 98  Bit Score: 34.20  E-value: 3.92e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489179815  46 AHLQRLERCFRNCPGYLSASLH-PSEDGQHVLNYTCWRSREDCeRAWQAREDAQGPLSAGVWRLGAKSvRFETF 118
Cdd:COG2329   20 EAFAERRELLAEQPGFLGFELLrSLEDPGEYLVVSYWESEEAF-RAWFRSSEHRAAHAKGREILAGPP-RVEHY 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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