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Conserved domains on  [gi|489178531|ref|WP_003088038|]
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MULTISPECIES: DUF1272 domain-containing protein [Pseudomonas]

Protein Classification

DUF1272 domain-containing protein( domain architecture ID 10008037)

DUF1272 domain-containing protein similar to Sinorhizobium meliloti protein R02474

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3813 COG3813
Uncharacterized conserved protein, DUF1272 domain [Function unknown];
1-80 1.29e-41

Uncharacterized conserved protein, DUF1272 domain [Function unknown];


:

Pssm-ID: 443025  Cd Length: 83  Bit Score: 130.40  E-value: 1.29e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489178531  1 MLELRPNCECCDRDLPGDSGDALICTFECTFCRDCATTRLGGQCPNCGGELLARPRRPRDALVRQPASSRRVVRPGGCPE 80
Cdd:COG3813   1 MLELRPNCECCDKDLPPDSPDARICSFECTFCADCAETVLDNVCPNCGGGLVPRPIRPAAALAKYPASTKRVHKPVGCAA 80
 
Name Accession Description Interval E-value
COG3813 COG3813
Uncharacterized conserved protein, DUF1272 domain [Function unknown];
1-80 1.29e-41

Uncharacterized conserved protein, DUF1272 domain [Function unknown];


Pssm-ID: 443025  Cd Length: 83  Bit Score: 130.40  E-value: 1.29e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489178531  1 MLELRPNCECCDRDLPGDSGDALICTFECTFCRDCATTRLGGQCPNCGGELLARPRRPRDALVRQPASSRRVVRPGGCPE 80
Cdd:COG3813   1 MLELRPNCECCDKDLPPDSPDARICSFECTFCADCAETVLDNVCPNCGGGLVPRPIRPAAALAKYPASTKRVHKPVGCAA 80
DUF1272 pfam06906
Protein of unknown function (DUF1272); This family consists of several hypothetical bacterial ...
 1-57 4.19e-26

Protein of unknown function (DUF1272); This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.


Pssm-ID: 429185  Cd Length: 57  Bit Score: 90.38  E-value: 4.19e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 489178531   1 MLELRPNCECCDRDLPGDSGDALICTFECTFCRDCATTRLGGQCPNCGGELLARPRR 57
Cdd:pfam06906  1 MLELRPNCECCDRDLPPDSPDARICSYECTFCADCAEARLHNVCPNCGGELVPRPRR 57
PRK12775 PRK12775
putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin ...
 8-57 2.54e-03

putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional


Pssm-ID: 183738 [Multi-domain]  Cd Length: 1006  Bit Score: 34.53  E-value: 2.54e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 489178531    8 CECCDRDLPGDsgDALICTFECTF---CRDCATTRLG-----GQCPNCGGELLARPRR 57
Cdd:PRK12775  799 CPKCHRPLEGD--EEYVCCATSELqwrCDDCGKVSEGfafpyGMCPACGGKLQALDRR 854
 
Name Accession Description Interval E-value
COG3813 COG3813
Uncharacterized conserved protein, DUF1272 domain [Function unknown];
1-80 1.29e-41

Uncharacterized conserved protein, DUF1272 domain [Function unknown];


Pssm-ID: 443025  Cd Length: 83  Bit Score: 130.40  E-value: 1.29e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489178531  1 MLELRPNCECCDRDLPGDSGDALICTFECTFCRDCATTRLGGQCPNCGGELLARPRRPRDALVRQPASSRRVVRPGGCPE 80
Cdd:COG3813   1 MLELRPNCECCDKDLPPDSPDARICSFECTFCADCAETVLDNVCPNCGGGLVPRPIRPAAALAKYPASTKRVHKPVGCAA 80
DUF1272 pfam06906
Protein of unknown function (DUF1272); This family consists of several hypothetical bacterial ...
 1-57 4.19e-26

Protein of unknown function (DUF1272); This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.


Pssm-ID: 429185  Cd Length: 57  Bit Score: 90.38  E-value: 4.19e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 489178531   1 MLELRPNCECCDRDLPGDSGDALICTFECTFCRDCATTRLGGQCPNCGGELLARPRR 57
Cdd:pfam06906  1 MLELRPNCECCDRDLPPDSPDARICSYECTFCADCAEARLHNVCPNCGGELVPRPRR 57
PRK12775 PRK12775
putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin ...
 8-57 2.54e-03

putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional


Pssm-ID: 183738 [Multi-domain]  Cd Length: 1006  Bit Score: 34.53  E-value: 2.54e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 489178531    8 CECCDRDLPGDsgDALICTFECTF---CRDCATTRLG-----GQCPNCGGELLARPRR 57
Cdd:PRK12775  799 CPKCHRPLEGD--EEYVCCATSELqwrCDDCGKVSEGfafpyGMCPACGGKLQALDRR 854
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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