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Conserved domains on  [gi|489176679|ref|WP_003086201|]
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MULTISPECIES: hypothetical protein [Pseudomonas]

Protein Classification

NAD(P)/FAD-dependent oxidoreductase( domain architecture ID 1000486)

NAD(P)/FAD-dependent oxidoreductase similar to flavin-dependent halogenases that mediate the halogenation (e.g. chlorination) of substrates

CATH:  3.50.50.60
EC:  1.-.-.-
Gene Ontology:  GO:0016491

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FixC super family cl33990
Dehydrogenase (flavoprotein) [Energy production and conversion];
6-73 1.05e-04

Dehydrogenase (flavoprotein) [Energy production and conversion];


The actual alignment was detected with superfamily member COG0644:

Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 38.41  E-value: 1.05e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489176679   6 EHVVAPPLDAPEAHLYRQDIDFYALLLALQHGANARHHTRIEGFEFLPEGVAIRLADGESLQARYVIG 73
Cdd:COG0644   69 KSVELPPGRGGGYVVDRARFDRWLAEQAEEAGAEVRTGTRVTDVLRDDGRVVVRTGDGEEIRADYVVD 136
 
Name Accession Description Interval E-value
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
6-73 1.05e-04

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 38.41  E-value: 1.05e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489176679   6 EHVVAPPLDAPEAHLYRQDIDFYALLLALQHGANARHHTRIEGFEFLPEGVAIRLADGESLQARYVIG 73
Cdd:COG0644   69 KSVELPPGRGGGYVVDRARFDRWLAEQAEEAGAEVRTGTRVTDVLRDDGRVVVRTGDGEEIRADYVVD 136
PRK08163 PRK08163
3-hydroxybenzoate 6-monooxygenase;
1-73 8.02e-04

3-hydroxybenzoate 6-monooxygenase;


Pssm-ID: 181262 [Multi-domain]  Cd Length: 396  Bit Score: 36.17  E-value: 8.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489176679   1 MDSA-AEHVVAPPLDA--------PEAHLYRQDIDFYALLLALQHG-ANARHHTRIEGFEFLPEGVAIRLADGESLQARY 70
Cdd:PRK08163  78 MDAVdAEEVVRIPTGQafrarfgnPYAVIHRADIHLSLLEAVLDHPlVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDA 157


                 ...
gi 489176679  71 VIG 73
Cdd:PRK08163 158 LIG 160
 
Name Accession Description Interval E-value
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
6-73 1.05e-04

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 38.41  E-value: 1.05e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489176679   6 EHVVAPPLDAPEAHLYRQDIDFYALLLALQHGANARHHTRIEGFEFLPEGVAIRLADGESLQARYVIG 73
Cdd:COG0644   69 KSVELPPGRGGGYVVDRARFDRWLAEQAEEAGAEVRTGTRVTDVLRDDGRVVVRTGDGEEIRADYVVD 136
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 26-73 1.46e-04

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 38.38  E-value: 1.46e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 489176679  26 DFYALLL--ALQHGANARHHTRIEGFEFLPEGVAIRLADGESLQARYVIG 73
Cdd:COG0654  105 DLERALLeaARALGVELRFGTEVTGLEQDADGVTVTLADGRTLRADLVVG 154
PRK08163 PRK08163
3-hydroxybenzoate 6-monooxygenase;
1-73 8.02e-04

3-hydroxybenzoate 6-monooxygenase;


Pssm-ID: 181262 [Multi-domain]  Cd Length: 396  Bit Score: 36.17  E-value: 8.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489176679   1 MDSA-AEHVVAPPLDA--------PEAHLYRQDIDFYALLLALQHG-ANARHHTRIEGFEFLPEGVAIRLADGESLQARY 70
Cdd:PRK08163  78 MDAVdAEEVVRIPTGQafrarfgnPYAVIHRADIHLSLLEAVLDHPlVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDA 157


                 ...
gi 489176679  71 VIG 73
Cdd:PRK08163 158 LIG 160
PRK07190 PRK07190
FAD-binding protein;
37-73 3.20e-03

FAD-binding protein;


Pssm-ID: 235955 [Multi-domain]  Cd Length: 487  Bit Score: 34.40  E-value: 3.20e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 489176679  37 GANARHHTRIEGFEFLPEGVAIRLADGESLQARYVIG 73
Cdd:PRK07190 123 GAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIG 159
PRK07333 PRK07333
ubiquinone biosynthesis hydroxylase;
41-81 4.25e-03

ubiquinone biosynthesis hydroxylase;


Pssm-ID: 180935 [Multi-domain]  Cd Length: 403  Bit Score: 34.18  E-value: 4.25e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 489176679  41 RHHTRIEGFEFLPEGVAIRLADGESLQARYVIgqACTWVSS 81
Cdd:PRK07333 129 REATSVTDFETRDEGVTVTLSDGSVLEARLLV--AADGARS 167
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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