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Conserved domains on  [gi|489175615|ref|WP_003085141|]
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MULTISPECIES: phage baseplate assembly protein V [Pseudomonas]

Protein Classification

phage baseplate assembly protein V( domain architecture ID 10019762)

phage baseplate assembly protein V forms the small spikes on the baseplate that plug the end of the tube before DNA ejection and form a channel perforating the host membrane during ejection

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
phage_P2_V TIGR01644
phage baseplate assembly protein V; This model describes a family of phage (and bacteriocin) ...
 8-185 1.14e-55

phage baseplate assembly protein V; This model describes a family of phage (and bacteriocin) proteins related to the phage P2 V gene product, which forms the small spike at the tip of the tail. Homologs in general are annotated as baseplate assembly protein V. At least one member is encoded within a region of Pectobacterium carotovorum (Erwinia carotovora) described as a bacteriocin, a phage tail-derived module able to kill bacteria closely related to the host strain. [Mobile and extrachromosomal element functions, Prophage functions]


:

Pssm-ID: 273729 [Multi-domain]  Cd Length: 190  Bit Score: 174.13  E-value: 1.14e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489175615    8 HDRMLAAMILPCVVVAVDLAAARVRVRSGDWTSGWLRWHSLAAGKVRHWRAPSIGEQGVLLSPSGGVSMGTFIPGLYGDA 87
Cdd:TIGR01644   1 LMRGLRNLIRRGVVAEVDDAAGRVRVLQGELLTGWLPWLVERAGNYRTWSAPSVGEQVLVLSPGGQLDTGVVLPGVYSDD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489175615   88 GTAPDNSASSETWRFDDGASLSYDWAAHRYRVELP-------SGTVEVRVGASEVRVSDGAVSLKAPKISLEGPVEIAGT 160
Cdd:TIGR01644  81 FRPPSLSAGDTVTYFADGARIEYDKAAHALTVCGIktvyldaGDGTTVTVDAPQITFTGGVTTLKGPETVITGNVTIDGT 160

                         170       180
                  ....*....|....*....|....*
gi 489175615  161 LTVSGDILGGGSIIDTAGNSNHHTH 185
Cdd:TIGR01644 161 LHTGGDASSNGISLDKHGHTGVHSG 185
 
Name Accession Description Interval E-value
phage_P2_V TIGR01644
phage baseplate assembly protein V; This model describes a family of phage (and bacteriocin) ...
 8-185 1.14e-55

phage baseplate assembly protein V; This model describes a family of phage (and bacteriocin) proteins related to the phage P2 V gene product, which forms the small spike at the tip of the tail. Homologs in general are annotated as baseplate assembly protein V. At least one member is encoded within a region of Pectobacterium carotovorum (Erwinia carotovora) described as a bacteriocin, a phage tail-derived module able to kill bacteria closely related to the host strain. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273729 [Multi-domain]  Cd Length: 190  Bit Score: 174.13  E-value: 1.14e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489175615    8 HDRMLAAMILPCVVVAVDLAAARVRVRSGDWTSGWLRWHSLAAGKVRHWRAPSIGEQGVLLSPSGGVSMGTFIPGLYGDA 87
Cdd:TIGR01644   1 LMRGLRNLIRRGVVAEVDDAAGRVRVLQGELLTGWLPWLVERAGNYRTWSAPSVGEQVLVLSPGGQLDTGVVLPGVYSDD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489175615   88 GTAPDNSASSETWRFDDGASLSYDWAAHRYRVELP-------SGTVEVRVGASEVRVSDGAVSLKAPKISLEGPVEIAGT 160
Cdd:TIGR01644  81 FRPPSLSAGDTVTYFADGARIEYDKAAHALTVCGIktvyldaGDGTTVTVDAPQITFTGGVTTLKGPETVITGNVTIDGT 160

                         170       180
                  ....*....|....*....|....*
gi 489175615  161 LTVSGDILGGGSIIDTAGNSNHHTH 185
Cdd:TIGR01644 161 LHTGGDASSNGISLDKHGHTGVHSG 185
gpV COG4540
Phage P2 baseplate assembly protein gpV [Mobilome: prophages, transposons];
11-185 1.45e-51

Phage P2 baseplate assembly protein gpV [Mobilome: prophages, transposons];


Pssm-ID: 443606 [Multi-domain]  Cd Length: 167  Bit Score: 162.77  E-value: 1.45e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489175615  11 MLAAMILPCVVVAVDLAAARVRVRSGDWTSGWLRWHSLAAGKVRHWRAPSIGEQGVLLSPSGGVSMGTFIPGLYGDAGTA 90
Cdd:COG4540    1 RLANLIRTGTVAAVDADPGRVRVRTGDLLTDWLPWLTPRAGGVRDWWPPSVGEQVLLLSPGGDLEDGVVLPGLYSDADPA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489175615  91 PDNSASSETWRFDDGASLSYDWAAHRYRVELPsGTVEVRvgasevrvSDGAVSLKAPKISLEGP-VEIAGTLTVSGDILG 169
Cdd:COG4540   81 PSDSPDAHVTRFPDGAVIEYDRATGALTVTGI-GTATVT--------ASGSVTLTAPTVTLDAPvVTITGNVTVSGDVTA 151

                        170
                 ....*....|....*.
gi 489175615 170 GGSIIDTAGNSNHHTH 185
Cdd:COG4540  152 GGVSLNNHTHGGVQSG 167
Phage_base_V pfam04717
Type VI secretion system/phage-baseplate injector OB domain; Family of bacterial and phage ...
 34-84 5.62e-12

Type VI secretion system/phage-baseplate injector OB domain; Family of bacterial and phage baseplate assembly proteins responsible for forming the small spike at the end of the tail or bacterial pathogenic needle-shaft. This entry represents the OB fold part of the structure. This structure contains an unusual extra beta hairpin that forms the foundation of the spike protein's beta helix.


Pssm-ID: 428084 [Multi-domain]  Cd Length: 75  Bit Score: 58.36  E-value: 5.62e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 489175615   34 RSGDWTSGWLRWHSLAAGKVR-HWRAPSIGEQGVLLSPSGGVSMGTFIPGLY 84
Cdd:pfam04717  24 LTDEEESGWARWAAPRAGAGRgLWFLPEVGEQVLVLFEGGDPSRPVVLGGLW 75
 
Name Accession Description Interval E-value
phage_P2_V TIGR01644
phage baseplate assembly protein V; This model describes a family of phage (and bacteriocin) ...
 8-185 1.14e-55

phage baseplate assembly protein V; This model describes a family of phage (and bacteriocin) proteins related to the phage P2 V gene product, which forms the small spike at the tip of the tail. Homologs in general are annotated as baseplate assembly protein V. At least one member is encoded within a region of Pectobacterium carotovorum (Erwinia carotovora) described as a bacteriocin, a phage tail-derived module able to kill bacteria closely related to the host strain. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273729 [Multi-domain]  Cd Length: 190  Bit Score: 174.13  E-value: 1.14e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489175615    8 HDRMLAAMILPCVVVAVDLAAARVRVRSGDWTSGWLRWHSLAAGKVRHWRAPSIGEQGVLLSPSGGVSMGTFIPGLYGDA 87
Cdd:TIGR01644   1 LMRGLRNLIRRGVVAEVDDAAGRVRVLQGELLTGWLPWLVERAGNYRTWSAPSVGEQVLVLSPGGQLDTGVVLPGVYSDD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489175615   88 GTAPDNSASSETWRFDDGASLSYDWAAHRYRVELP-------SGTVEVRVGASEVRVSDGAVSLKAPKISLEGPVEIAGT 160
Cdd:TIGR01644  81 FRPPSLSAGDTVTYFADGARIEYDKAAHALTVCGIktvyldaGDGTTVTVDAPQITFTGGVTTLKGPETVITGNVTIDGT 160

                         170       180
                  ....*....|....*....|....*
gi 489175615  161 LTVSGDILGGGSIIDTAGNSNHHTH 185
Cdd:TIGR01644 161 LHTGGDASSNGISLDKHGHTGVHSG 185
gpV COG4540
Phage P2 baseplate assembly protein gpV [Mobilome: prophages, transposons];
11-185 1.45e-51

Phage P2 baseplate assembly protein gpV [Mobilome: prophages, transposons];


Pssm-ID: 443606 [Multi-domain]  Cd Length: 167  Bit Score: 162.77  E-value: 1.45e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489175615  11 MLAAMILPCVVVAVDLAAARVRVRSGDWTSGWLRWHSLAAGKVRHWRAPSIGEQGVLLSPSGGVSMGTFIPGLYGDAGTA 90
Cdd:COG4540    1 RLANLIRTGTVAAVDADPGRVRVRTGDLLTDWLPWLTPRAGGVRDWWPPSVGEQVLLLSPGGDLEDGVVLPGLYSDADPA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489175615  91 PDNSASSETWRFDDGASLSYDWAAHRYRVELPsGTVEVRvgasevrvSDGAVSLKAPKISLEGP-VEIAGTLTVSGDILG 169
Cdd:COG4540   81 PSDSPDAHVTRFPDGAVIEYDRATGALTVTGI-GTATVT--------ASGSVTLTAPTVTLDAPvVTITGNVTVSGDVTA 151

                        170
                 ....*....|....*.
gi 489175615 170 GGSIIDTAGNSNHHTH 185
Cdd:COG4540  152 GGVSLNNHTHGGVQSG 167
Phage_base_V pfam04717
Type VI secretion system/phage-baseplate injector OB domain; Family of bacterial and phage ...
 34-84 5.62e-12

Type VI secretion system/phage-baseplate injector OB domain; Family of bacterial and phage baseplate assembly proteins responsible for forming the small spike at the end of the tail or bacterial pathogenic needle-shaft. This entry represents the OB fold part of the structure. This structure contains an unusual extra beta hairpin that forms the foundation of the spike protein's beta helix.


Pssm-ID: 428084 [Multi-domain]  Cd Length: 75  Bit Score: 58.36  E-value: 5.62e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 489175615   34 RSGDWTSGWLRWHSLAAGKVR-HWRAPSIGEQGVLLSPSGGVSMGTFIPGLY 84
Cdd:pfam04717  24 LTDEEESGWARWAAPRAGAGRgLWFLPEVGEQVLVLFEGGDPSRPVVLGGLW 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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