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Conserved domains on  [gi|489173513|ref|WP_003083056|]
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MULTISPECIES: flagellar biosynthesis protein FlhB [Pseudomonas]

Protein Classification

flagellar type III secretion system protein FlhB( domain architecture ID 10012530)

flagellar type III secretion system protein FlhB may be involved in the export of flagellum proteins; belongs to the EscU/YscU/HrcU family of type III secretion system proteins

Gene Symbol:  flhB
Gene Ontology:  GO:0009306|GO:0044780|GO:0016020
PubMed:  32157081|26244937

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flhB PRK05702
flagellar type III secretion system protein FlhB;
2-360 0e+00

flagellar type III secretion system protein FlhB;


:

Pssm-ID: 235569  Cd Length: 359  Bit Score: 530.50  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513   2 AESESGQDKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAGALLRLMRSNFELSRETAMNTESMLQ 81
Cdd:PRK05702   1 MAEDDDDEKTEEPTPKKLEKAREKGQVPRSRELNTAASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNDVLS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  82 LLGASAYLAAQGLWPILLMLLVAAIVGPIALGGWLFSMDALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVA 161
Cdd:PRK05702  81 LFLLLLLEALLALLPILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 162 LLVLSADRDALLALAHQPLEQAILHSVRVVGWSAFWMACSLLLIAAVDVPYQIWDNRQKLLMTKQEVRDEYKDSEGKPEV 241
Cdd:PRK05702 161 YFVLWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 242 KSKIRQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLALKIREVAQEHKVMVMESPALAR 321
Cdd:PRK05702 241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLAR 320

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 489173513 322 AVYYSTELDQEIPAGLYLAVAQVLAYVYQLKQYQAGKGK 360
Cdd:PRK05702 321 ALYATVEIGQEIPEELYKAVAEVLAYVYQLKRWRKGGGQ 359
 
Name Accession Description Interval E-value
flhB PRK05702
flagellar type III secretion system protein FlhB;
2-360 0e+00

flagellar type III secretion system protein FlhB;


Pssm-ID: 235569  Cd Length: 359  Bit Score: 530.50  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513   2 AESESGQDKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAGALLRLMRSNFELSRETAMNTESMLQ 81
Cdd:PRK05702   1 MAEDDDDEKTEEPTPKKLEKAREKGQVPRSRELNTAASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNDVLS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  82 LLGASAYLAAQGLWPILLMLLVAAIVGPIALGGWLFSMDALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVA 161
Cdd:PRK05702  81 LFLLLLLEALLALLPILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 162 LLVLSADRDALLALAHQPLEQAILHSVRVVGWSAFWMACSLLLIAAVDVPYQIWDNRQKLLMTKQEVRDEYKDSEGKPEV 241
Cdd:PRK05702 161 YFVLWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 242 KSKIRQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLALKIREVAQEHKVMVMESPALAR 321
Cdd:PRK05702 241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLAR 320

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 489173513 322 AVYYSTELDQEIPAGLYLAVAQVLAYVYQLKQYQAGKGK 360
Cdd:PRK05702 321 ALYATVEIGQEIPEELYKAVAEVLAYVYQLKRWRKGGGQ 359
FlhB COG1377
Flagellar biosynthesis protein FlhB [Cell motility];
1-353 7.46e-180

Flagellar biosynthesis protein FlhB [Cell motility];


Pssm-ID: 440987  Cd Length: 352  Bit Score: 503.11  E-value: 7.46e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513   1 MAEsESGQDKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAGALLRLMRSNFELSRETAMNTESML 80
Cdd:COG1377    1 MAE-EDDGEKTEEPTPKRLRDAREKGQVARSRELTTALVLLAGLLLLLFLGPSLAERLGELLRSLLSFARALALDPADLL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  81 QLLGASAYLAAQGLWPILLMLLVAAIVGPIALGGWLFSMDALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAV 160
Cdd:COG1377   80 ALLGALLLEALLALLPLLLVLALAALLANLLQGGFLFSTKALKPKFSRLNPISGLKRLFSLRALVELLKSLLKLLLVGGV 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 161 ALLVLSADRDALLALAHQPLEQAILHSVRVVGWSAFWMACSLLLIAAVDVPYQIWDNRQKLLMTKQEVRDEYKDSEGKPE 240
Cdd:COG1377  160 AYLVLRGELPELLALAALPLAAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWEHEKKLRMTKQEVKDEHKESEGDPE 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 241 VKSKIRQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLALKIREVAQEHKVMVMESPALA 320
Cdd:COG1377  240 VKGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDPGKMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLA 319

                        330       340       350
                 ....*....|....*....|....*....|...
gi 489173513 321 RAVYYSTELDQEIPAGLYLAVAQVLAYVYQLKQ 353
Cdd:COG1377  320 RALYATVEVGQEIPEELYQAVAEVLAYVYQLKR 352
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 9-348 7.26e-170

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 477.32  E-value: 7.26e-170
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513    9 DKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAGALLRLMRSNFELSRETamNTESMLQLLGASAY 88
Cdd:pfam01312   1 EKTEEPTPKKLRDAREKGQVAKSRELTSAAVLLAGLLALLFLGPFLLERLAELFRSVLSFDRAA--DPAALLALLLALLL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513   89 LAAQGLWPILLMLLVAAIVGPIALGGWLFSMDALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVALLVLSAD 168
Cdd:pfam01312  79 ELLLLLLPLLLVLLLAALLANLLQVGFLFSTKALKPKFSKLNPISGLKRIFSLRSLVELLKSLLKVAVVGAVAYLVLRGN 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  169 RDALLALAHQPLEQAILHSVRVVGWSAFWMACSLLLIAAVDVPYQIWDNRQKLLMTKQEVRDEYKDSEGKPEVKSKIRQM 248
Cdd:pfam01312 159 LPELLALADLPLEAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWQFEKKLKMTKQEVKDEYKESEGDPEIKGRIRQL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  249 QREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLALKIREVAQEHKVMVMESPALARAVYYSTE 328
Cdd:pfam01312 239 QREMARRRMMAEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALYATVE 318

                         330       340
                  ....*....|....*....|
gi 489173513  329 LDQEIPAGLYLAVAQVLAYV 348
Cdd:pfam01312 319 VGQEIPEELYQAVAEVLAYV 338
flhB TIGR00328
flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from ...
 9-355 2.30e-142

flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 129428  Cd Length: 347  Bit Score: 407.81  E-value: 2.30e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513    9 DKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAGALLRLMRSNFELSRETAMNTESMLQLLGASAY 88
Cdd:TIGR00328   1 EKTEEPTPKKLRKAREEGNVPKSREVNSAAVLLAGVLSLLFFGDGLADLLVVLMSFFLSFETSDILNLGSLVGIFFQSIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513   89 LAAQGLWPILLMLLVAAIVGPIALGGWLFSMDALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVALLVLSAD 168
Cdd:TIGR00328  81 EVLLLLLPIFVLLLVVGVLSNIAQFGFLFTTKPLKPKFSKINPIKGLKRLFSLQSLVELLKSLLKVFLVSFVAYFVLRNS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  169 RDALLALAHQPLEQAILHSVRVVGWSAFWMACSLLLIAAVDVPYQIWDNRQKLLMTKQEVRDEYKDSEGKPEVKSKIRQM 248
Cdd:TIGR00328 161 LGELLSLSLYSLVQAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  249 QREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLALKIREVAQEHKVMVMESPALARAVYYSTE 328
Cdd:TIGR00328 241 QREAARRRMMQEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGVDELALKIKEIARENNVPIVENPPLARALYRQVE 320

                         330       340
                  ....*....|....*....|....*..
gi 489173513  329 LDQEIPAGLYLAVAQVLAYVYQLKQYQ 355
Cdd:TIGR00328 321 IGQEIPPELYKAVAEVLAYVYKLKKKR 347
 
Name Accession Description Interval E-value
flhB PRK05702
flagellar type III secretion system protein FlhB;
2-360 0e+00

flagellar type III secretion system protein FlhB;


Pssm-ID: 235569  Cd Length: 359  Bit Score: 530.50  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513   2 AESESGQDKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAGALLRLMRSNFELSRETAMNTESMLQ 81
Cdd:PRK05702   1 MAEDDDDEKTEEPTPKKLEKAREKGQVPRSRELNTAASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNDVLS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  82 LLGASAYLAAQGLWPILLMLLVAAIVGPIALGGWLFSMDALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVA 161
Cdd:PRK05702  81 LFLLLLLEALLALLPILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 162 LLVLSADRDALLALAHQPLEQAILHSVRVVGWSAFWMACSLLLIAAVDVPYQIWDNRQKLLMTKQEVRDEYKDSEGKPEV 241
Cdd:PRK05702 161 YFVLWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 242 KSKIRQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLALKIREVAQEHKVMVMESPALAR 321
Cdd:PRK05702 241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLAR 320

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 489173513 322 AVYYSTELDQEIPAGLYLAVAQVLAYVYQLKQYQAGKGK 360
Cdd:PRK05702 321 ALYATVEIGQEIPEELYKAVAEVLAYVYQLKRWRKGGGQ 359
FlhB COG1377
Flagellar biosynthesis protein FlhB [Cell motility];
1-353 7.46e-180

Flagellar biosynthesis protein FlhB [Cell motility];


Pssm-ID: 440987  Cd Length: 352  Bit Score: 503.11  E-value: 7.46e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513   1 MAEsESGQDKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAGALLRLMRSNFELSRETAMNTESML 80
Cdd:COG1377    1 MAE-EDDGEKTEEPTPKRLRDAREKGQVARSRELTTALVLLAGLLLLLFLGPSLAERLGELLRSLLSFARALALDPADLL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  81 QLLGASAYLAAQGLWPILLMLLVAAIVGPIALGGWLFSMDALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAV 160
Cdd:COG1377   80 ALLGALLLEALLALLPLLLVLALAALLANLLQGGFLFSTKALKPKFSRLNPISGLKRLFSLRALVELLKSLLKLLLVGGV 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 161 ALLVLSADRDALLALAHQPLEQAILHSVRVVGWSAFWMACSLLLIAAVDVPYQIWDNRQKLLMTKQEVRDEYKDSEGKPE 240
Cdd:COG1377  160 AYLVLRGELPELLALAALPLAAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWEHEKKLRMTKQEVKDEHKESEGDPE 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 241 VKSKIRQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLALKIREVAQEHKVMVMESPALA 320
Cdd:COG1377  240 VKGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDPGKMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLA 319

                        330       340       350
                 ....*....|....*....|....*....|...
gi 489173513 321 RAVYYSTELDQEIPAGLYLAVAQVLAYVYQLKQ 353
Cdd:COG1377  320 RALYATVEVGQEIPEELYQAVAEVLAYVYQLKR 352
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 9-348 7.26e-170

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 477.32  E-value: 7.26e-170
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513    9 DKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAGALLRLMRSNFELSRETamNTESMLQLLGASAY 88
Cdd:pfam01312   1 EKTEEPTPKKLRDAREKGQVAKSRELTSAAVLLAGLLALLFLGPFLLERLAELFRSVLSFDRAA--DPAALLALLLALLL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513   89 LAAQGLWPILLMLLVAAIVGPIALGGWLFSMDALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVALLVLSAD 168
Cdd:pfam01312  79 ELLLLLLPLLLVLLLAALLANLLQVGFLFSTKALKPKFSKLNPISGLKRIFSLRSLVELLKSLLKVAVVGAVAYLVLRGN 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  169 RDALLALAHQPLEQAILHSVRVVGWSAFWMACSLLLIAAVDVPYQIWDNRQKLLMTKQEVRDEYKDSEGKPEVKSKIRQM 248
Cdd:pfam01312 159 LPELLALADLPLEAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWQFEKKLKMTKQEVKDEYKESEGDPEIKGRIRQL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  249 QREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLALKIREVAQEHKVMVMESPALARAVYYSTE 328
Cdd:pfam01312 239 QREMARRRMMAEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALYATVE 318

                         330       340
                  ....*....|....*....|
gi 489173513  329 LDQEIPAGLYLAVAQVLAYV 348
Cdd:pfam01312 319 VGQEIPEELYQAVAEVLAYV 338
flhB TIGR00328
flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from ...
 9-355 2.30e-142

flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 129428  Cd Length: 347  Bit Score: 407.81  E-value: 2.30e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513    9 DKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAGALLRLMRSNFELSRETAMNTESMLQLLGASAY 88
Cdd:TIGR00328   1 EKTEEPTPKKLRKAREEGNVPKSREVNSAAVLLAGVLSLLFFGDGLADLLVVLMSFFLSFETSDILNLGSLVGIFFQSIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513   89 LAAQGLWPILLMLLVAAIVGPIALGGWLFSMDALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVALLVLSAD 168
Cdd:TIGR00328  81 EVLLLLLPIFVLLLVVGVLSNIAQFGFLFTTKPLKPKFSKINPIKGLKRLFSLQSLVELLKSLLKVFLVSFVAYFVLRNS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  169 RDALLALAHQPLEQAILHSVRVVGWSAFWMACSLLLIAAVDVPYQIWDNRQKLLMTKQEVRDEYKDSEGKPEVKSKIRQM 248
Cdd:TIGR00328 161 LGELLSLSLYSLVQAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  249 QREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLALKIREVAQEHKVMVMESPALARAVYYSTE 328
Cdd:TIGR00328 241 QREAARRRMMQEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGVDELALKIKEIARENNVPIVENPPLARALYRQVE 320

                         330       340
                  ....*....|....*....|....*..
gi 489173513  329 LDQEIPAGLYLAVAQVLAYVYQLKQYQ 355
Cdd:TIGR00328 321 IGQEIPPELYKAVAEVLAYVYKLKKKR 347
flhB PRK12468
flagellar biosynthesis protein FlhB; Reviewed
 1-374 1.60e-101

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 171522  Cd Length: 386  Bit Score: 305.42  E-value: 1.60e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513   1 MAEsESGQDKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAGALLRLMRSNFELSRETAMNTESML 80
Cdd:PRK12468   1 MAE-DSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSAMVAQGLHFDHSMVSNDKQML 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  81 QLLGASAYLAAQGLWPILLMLLVAAIVGPIALGGWLFSMDALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAV 160
Cdd:PRK12468  80 RQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWV 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 161 ALLVLSADRDALLALAHQPLEQAILHSVRVVGWSAFWMACSLLLIAAVDVPYQIWDNRQKLLMTKQEVRDEYKDSEGKPE 240
Cdd:PRK12468 160 TGLFLWHNWPDMMRLIAAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPH 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 241 VKSKIRQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLALKIREVAQEHKVMVMESPALA 320
Cdd:PRK12468 240 VKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAEHRIPLLEAPPLA 319

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489173513 321 RAVYYSTELDQEIPAGLYLAVAQVLAYVYQLKQYQAGKGKRPSPLKDLPIPPDL 374
Cdd:PRK12468 320 RALFRHSEVGQHIPATLYAAVAEVLAWVYQLKRWKREGGLIPKKPEHLPVPEAL 373
PRK12772 PRK12772
fused FliR family export protein/FlhB family type III secretion system protein;
7-353 5.21e-95

fused FliR family export protein/FlhB family type III secretion system protein;


Pssm-ID: 237199 [Multi-domain]  Cd Length: 609  Bit Score: 295.82  E-value: 5.21e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513   7 GQDKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAGALLRLMRSNFELSRETAMNTESMLQLLGAS 86
Cdd:PRK12772 262 SDDKTEEATPKKKSDARKKGQIAKSKELALAITLLACTLVLSALGGYVANTLKETMIYFLNNYLNMNLNYNSLNSLAIIT 341

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  87 AYLAAQGLWPILLMLLVAAIVGPIALGGWLFSMDALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVALLVLS 166
Cdd:PRK12772 342 LLRVAKIFLPVALPIMVFGVAANLLQTGFLFTKEPLKPDLKKLNPINGFKRMFSMRSVMELLKDLTIITIVGIVGYKFLQ 421

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 167 ADRDALLALAhQPLEQAILHSVRVVGWSAFWMAC-SLLLIAAVDVPYQIWDNRQKLLMTKQEVRDEYKDSEGKPEVKSKI 245
Cdd:PRK12772 422 DNYLDILNLG-NLYLPYIITELKSLVISIFFRITlIMIIIAVADYVYQKYQYNKDLRMTKQEVKEEYKQDEGDPQIKAKI 500

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 246 RQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLALKIREVAQEHKVMVMESPALARAVYY 325
Cdd:PRK12772 501 KQKQREMAMQRMMQEVPKATVVVTNPTHIAVALKYEEGKDEAPKVVAKGADYVALKIKEIAKENDVPIIENKPLARLIYK 580

                        330       340
                 ....*....|....*....|....*...
gi 489173513 326 STELDQEIPAGLYLAVAQVLAYVYQLKQ 353
Cdd:PRK12772 581 KVEIDQEIPQDMYQAVAEILAIVYKLKK 608
EscU COG4792
Type III secretory pathway, EscU/YscU component [Intracellular trafficking, secretion, and ...
 10-351 2.23e-84

Type III secretory pathway, EscU/YscU component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443821  Cd Length: 344  Bit Score: 260.21  E-value: 2.23e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  10 KTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAGALLRLMRSNFELsretaMN---TESMLQLLGAS 86
Cdd:COG4792    5 KTEQPTPKKLRDARKKGQVAKSKDIVSAVQLLALLGYLLLEGDALVEHLQALILLPAQL-----LNlpfDEALNQLLGAL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  87 AYLAAQGLWPILLMLLVAAIVGPIALGGWLFSMDALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVALLVLS 166
Cdd:COG4792   80 LELLLRLVLPLLAVLILATILSNVAQVGFLFATEAIKPKLEKINPVENLKRIFSLRSLVELLKSLLKVVLLGLIFYYLLR 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 167 ADRDALLALAHQPLEQAILHSVRVVGWSAFWMACSLLLIAAVDVPYQIWDNRQKLLMTKQEVRDEYKDSEGKPEVKSKIR 246
Cdd:COG4792  160 GYLPTLVYLPYCGLACAGPVVGALLKWLWGVLLGAYLVFGLADYLFQRYQFRKQLRMSKDEVKREYKDMEGDPEIKQKRR 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 247 QMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLALKIREVAQEHKVMVMESPALARAVYYS 326
Cdd:COG4792  240 RLHREIQSGSLALNVKRSSVVVRNPTHIAVGLRYVPGETPLPVVLEKGEDARAQQIVKLAEEEGVPVVENIPLARALYAD 319

                        330       340
                 ....*....|....*....|....*
gi 489173513 327 TELDQEIPAGLYLAVAQVLAYVYQL 351
Cdd:COG4792  320 AGLGEYIPEDLFEPVAEVLRLALLL 344
FlhB_rel_III TIGR01404
type III secretion protein, YscU/HrpY family; This model represents one of several families of ...
 10-351 4.45e-75

type III secretion protein, YscU/HrpY family; This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130471  Cd Length: 342  Bit Score: 236.02  E-value: 4.45e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513   10 KTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAGALLRLMRSNFELSREtaMNTESMLQLLGASAYL 89
Cdd:TIGR01404   3 KTEKPTPKKLRDARKKGQVAKSKDLTSAVLLLAGFFYLLSLASVFEEMLIALLILPLDFDDQ--PFAYALAQVLSGLLQL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513   90 AAQGLWPILLMLLVAAIVGPIALGGWLFSMDALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVALLVLSADR 169
Cdd:TIGR01404  81 ILTVLLPLLAIVLLAGVLSGLLQVGFVLATEALKPDLSKLNPISGLKQIFSLRSLKELLKSILKLVALALIFYLFLKNYL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  170 DALLALAHQPLEQAILHSVRVVGWsaFWMAC--SLLLIAAVDVPYQIWDNRQKLLMTKQEVRDEYKDSEGKPEVKSKIRQ 247
Cdd:TIGR01404 161 KELFALPYCGLDGLAPIVGELLKL--LILVClgFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRRE 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  248 MQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLALKIREVAQEHKVMVMESPALARAVYYST 327
Cdd:TIGR01404 239 LHQEILSEQLKSDVKRSTLVVANPTHIAIGIYYKPGETPLPLIICKGTDAQALAVRAYAEEAGIPVVRDIPLARQLYRTA 318

                         330       340
                  ....*....|....*....|....
gi 489173513  328 ELDQEIPAGLYLAVAQVLAYVYQL 351
Cdd:TIGR01404 319 RVGQYIPEELFEAVAELLRWLEQV 342
flhB PRK13109
flagellar biosynthesis protein FlhB; Reviewed
 1-349 4.73e-75

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183864  Cd Length: 358  Bit Score: 236.62  E-value: 4.73e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513   1 MAESESGQDKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGAD----LAGALLRLMRSNFELSRETAMNT 76
Cdd:PRK13109   1 MSDDTDKESKTEEATERKVRDAIEKGDIPVSREAPVFASMLGLLIALAFFARGqaaqLTGDLAPLLDDPRGFSLETGADA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  77 ESMLQLLGASAylaAQGLWPILLMLLVAAIVGPIALGGWLFSMDALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLV 156
Cdd:PRK13109  81 MLLLSRVALAA---GRFLLPILLILAVCGLAASLLQNLPRFVLDRIQPKWSRISPMKGWTRIFGTSGQVEFLKSLFKFLS 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 157 VLAVALLVLSADRDALL-ALAHQP--LEQAILH-SVRVVgwSAFWMACslLLIAAVDVPYQIWDNRQKLLMTKQEVRDEY 232
Cdd:PRK13109 158 VSVVVLLLLRSERAKAVnAMFVDPsqLPELILTvAIRLV--SAVAIAT--IVLVALDLVWARFHWRRSLRMTKQEIKDEH 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 233 KDSEGKPEVKSKIRQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLALKIREVAQEHKVM 312
Cdd:PRK13109 234 KQAEGDPSVKARLRSLAQDRARNRMLANVPRATLVIANPTHFAIALRYERSENPAPLVVAKGQDLIALKIREIAEENGIP 313

                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 489173513 313 VMESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVY 349
Cdd:PRK13109 314 VIEDKPLARSLYDAVQVDQVIPAEFYRPVAQILYFLF 350
PRK12721 PRK12721
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
9-348 3.04e-63

EscU/YscU/HrcU family type III secretion system export apparatus switch protein;


Pssm-ID: 183700  Cd Length: 349  Bit Score: 205.68  E-value: 3.04e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513   9 DKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADL---AGALLRLMRSNFELSRETAMNtesmlQLLGA 85
Cdd:PRK12721   3 EKTEKPTEKKLRDARKKGQVVKSVEITSGVQLAALLLYFLLEGPSLveaIIGLINSTIQLLNKPFLYALT-----QILGA 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  86 SAYLAAQGLWPILLMLLVAAIVGPIALGGWLFSMDALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVALLVL 165
Cdd:PRK12721  78 VLEVLLRFLLVLGAGLIVATVGTGIAQVGPLLASKAIGPKAEKINPVSNAKQIFSLKSVFELCKSLLKVVILSLIFAYLL 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 166 SADRDALLALAHQPLEQAIlhsvRVVGWSAFWMACSLL----LIAAVDVPYQIWDNRQKLLMTKQEVRDEYKDSEGKPEV 241
Cdd:PRK12721 158 HYYAPSFAYLPYCGAACGL----PVVSTLIFWLWGGLLacylVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEI 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 242 KSKIRQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLALKIREVAQEHKVMVMESPALAR 321
Cdd:PRK12721 234 KQKRRELQSEIQSGSLANNVKKSTAVVRNPTHIAVCLYYHPGETPLPRVLEKGKDAQALHIVKLAERNGIPVVENIPLAR 313

                        330       340
                 ....*....|....*....|....*..
gi 489173513 322 AVYYSTELDQEIPAGLYLAVAQVLAYV 348
Cdd:PRK12721 314 ALFKEVECGDYIPETLFEPVAALLRMV 340
flhB PRK12773
flagellar biosynthesis protein FlhB; Reviewed
 8-353 4.88e-56

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183737  Cd Length: 646  Bit Score: 194.13  E-value: 4.88e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513   8 QDKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAggLLIYgadLAGALLrLMRSNFELSR-------ETAMNTESML 80
Cdd:PRK12773 298 EGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGV--ILVY---LMGEYF-FMRTYYILRKyihgvglRTDMSSESVT 371

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  81 QLLGASAYLAAQGLWPILLMLLVAAIVGPIALGGWLFSMDALQPKFSRLNPlsGLKRMF-SAKSLLELSKALIKFLVVLA 159
Cdd:PRK12773 372 ELLKNASTDLFTLLWPLLGITLVGAIIGNVAQVGFIFTPRALSFNFSRIRP--NFKKVLpTRQTLFNLGKSLAKVGLIAW 449

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 160 VALLVLSADRDALLALAHQPLEQAilhsVRVVGWSAFWM----ACSLLLIAAVDVPYQIWDNRQKLLMTKQEVRDEYKDS 235
Cdd:PRK12773 450 VSYIIISKDFFPILLSGEMGLEQA----VALVMNSSFKIflivGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKES 525

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 236 EGKPEVKSKIRQMQREMA-QRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLALKIREVAQEHKVMVM 314
Cdd:PRK12773 526 DGDRSLQARRRQLARDMMnKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTV 605

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 489173513 315 ESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLKQ 353
Cdd:PRK12773 606 EDRLQARGLYEEVELGAEVPQQFYRAIATILSRLESFRR 644
PRK08156 PRK08156
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
1-326 2.89e-43

EscU/YscU/HrcU family type III secretion system export apparatus switch protein;


Pssm-ID: 236168  Cd Length: 361  Bit Score: 154.01  E-value: 2.89e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513   1 MAEsesgqdKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGgLLIYGADL---AGALLRLMRSNFELSretamnte 77
Cdd:PRK08156   1 MAN------KTEKPTKKKLRDSAKKGQSFKSKDLITAVVLLGGIA-YLVSFGSFsefMSIYKRILADNFDIN-------- 65

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  78 sMLQLLGASAYLAAQGLWPILLMLLVAAIVGPIALGGWLFSMDALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVV 157
Cdd:PRK08156  66 -IGDYFLAVMIIFLKILIPFLLLCLLAGALPTLLQTRFVLATEAIKLNFSALNPVKGLKKIFSLRTVKEFVKALLYLIVF 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 158 LAVALLVLSADRDALLALAHQPLEQAILH----SVRVVGWSAFWMACSLLLIAAVDVPYQIWDnrqkLLMTKQEVRDEYK 233
Cdd:PRK08156 145 ALTAYVFWKNYKKEIFSQLNGNIVGLIVIwrelLVKLVLTFLACALIVLILDFIAEYFLHMKD----MKMDKQEVKREYK 220

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 234 DSEGKPEVKSKIRQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLALKIREVAQEHKVMV 313
Cdd:PRK08156 221 EQEGNPEIKSKRREAHQEILSEQVKSDIRNSRLIVANPTHIAIGIYFNPELAPIPFISVRETNQRALAVRAYAEKVGVPV 300

                        330
                 ....*....|...
gi 489173513 314 MESPALARAVYYS 326
Cdd:PRK08156 301 VRDIKLARRLYKT 313
PRK06298 PRK06298
type III secretion system protein; Validated
 9-352 9.70e-41

type III secretion system protein; Validated


Pssm-ID: 180519  Cd Length: 356  Bit Score: 146.92  E-value: 9.70e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513   9 DKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAGALLRLMRSNF------ELSRETA--MNTESML 80
Cdd:PRK06298   3 EKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFLTFSLSSFFAKHLGSFLVSIFktaptnHDPVVTVyyLKNCLIL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513  81 QLLGASAYLAAQGLWPILLMLLvaaIVGPIalggwlFSMDALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAV 160
Cdd:PRK06298  83 ILTASLPLLGAVAFVGVLVGFL---IVGPT------FSTEVFKPDIKKFNPIDNLKQKFKVKTLIELLKSILKISGAALI 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 161 ALLVLSADRDALLALAHQPLE------QAILHSVrVVGWSAFWmacslLLIAAVDVPYQIWDNRQKLLMTKQEVRDEYKD 234
Cdd:PRK06298 154 LYIVLKNRVPLIIETAGVPPLvtaqifKEILYKA-VTSIGIFF-----LVVAVLDLVYQRHNFAKELKMEKFEVKQEFKD 227

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173513 235 SEGKPEVKSKIRQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLALKIREVAQEHKVMVM 314
Cdd:PRK06298 228 TEGNPEIKGRRRQIAQEIAYEDTSSQVKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIAEAEKYGVPIM 307

                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 489173513 315 ESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLK 352
Cdd:PRK06298 308 RNVPLAHQLLDEGKELKFIPESTYEAIGEILLYITSLN 345
YlqH COG2257
Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, ...
 275-353 5.02e-23

Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441858 [Multi-domain]  Cd Length: 95  Bit Score: 92.17  E-value: 5.02e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489173513 275 AVALKYDPAGGGAPLLLAKGNDFLALKIREVAQEHKVMVMESPALARAVyYSTELDQEIPAGLYLAVAQVLAYVYQLKQ 353
Cdd:COG2257   11 AVALKYDGEKDNAPKVVAKGKGELAEKIIELAKEHGVPVHEDPELVELL-SQLDLGDEIPPELYQAVAEILAFIYRLDG 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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