NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|489115861|ref|WP_003025710|]
View 

MULTISPECIES: DUF1107 domain-containing protein [Enterobacteriaceae]

Protein Classification

DUF1107 domain-containing protein( domain architecture ID 10534786)

DUF1107 domain-containing protein similar to Escherichia coli YtfK

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF1107 pfam06526
Protein of unknown function (DUF1107); This family consists of several short, hypothetical ...
 1-63 1.87e-27

Protein of unknown function (DUF1107); This family consists of several short, hypothetical bacterial proteins of unknown function.


:

Pssm-ID: 428988  Cd Length: 63  Bit Score: 93.40  E-value: 1.87e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489115861   1 MKIFQRYNPLQVAKYVKILFRGRLYIKDVGAFEFDKGKILIPKVKDKLHFSVMSEVNRQVLRL 63
Cdd:pfam06526  1 MRIFKKYAPLQIAKYVKTFFRGRIYIKGLGRFEFDNGRLLLPKKADKKHLSTVSEINQEIKRL 63
 
Name Accession Description Interval E-value
DUF1107 pfam06526
Protein of unknown function (DUF1107); This family consists of several short, hypothetical ...
 1-63 1.87e-27

Protein of unknown function (DUF1107); This family consists of several short, hypothetical bacterial proteins of unknown function.


Pssm-ID: 428988  Cd Length: 63  Bit Score: 93.40  E-value: 1.87e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489115861   1 MKIFQRYNPLQVAKYVKILFRGRLYIKDVGAFEFDKGKILIPKVKDKLHFSVMSEVNRQVLRL 63
Cdd:pfam06526  1 MRIFKKYAPLQIAKYVKTFFRGRIYIKGLGRFEFDNGRLLLPKKADKKHLSTVSEINQEIKRL 63
 
Name Accession Description Interval E-value
DUF1107 pfam06526
Protein of unknown function (DUF1107); This family consists of several short, hypothetical ...
 1-63 1.87e-27

Protein of unknown function (DUF1107); This family consists of several short, hypothetical bacterial proteins of unknown function.


Pssm-ID: 428988  Cd Length: 63  Bit Score: 93.40  E-value: 1.87e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489115861   1 MKIFQRYNPLQVAKYVKILFRGRLYIKDVGAFEFDKGKILIPKVKDKLHFSVMSEVNRQVLRL 63
Cdd:pfam06526  1 MRIFKKYAPLQIAKYVKTFFRGRIYIKGLGRFEFDNGRLLLPKKADKKHLSTVSEINQEIKRL 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH