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Conserved domains on  [gi|489112050|ref|WP_003021904|]
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MULTISPECIES: hypothetical protein [Citrobacter]

Protein Classification

response regulator( domain architecture ID 139559)

response regulator receives the signal from a sensor partner in two-component systems through its receiver (REC) domain

Gene Ontology:  GO:0000160
PubMed:  31100988

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
REC super family cl19078
phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response ...
59-135 6.13e-03

phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs); Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.


The actual alignment was detected with superfamily member cd17574:

Pssm-ID: 473134 [Multi-domain]  Cd Length: 99  Bit Score: 35.08  E-value: 6.13e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489112050  59 YLAYALSRHlfsGTRTAVFQSVESALPSMQEPVIsQLVI-DIeslTLPYFDILERLRQLIKQRNDIQIfIMLSSRDED 135
Cdd:cd17574   12 LLSDYLEKE---GYEVDTAADGEEALELAREEQP-DLIIlDV---MLPGMDGFEVCRRLREKGSDIPI-IMLTAKDEE 81
 
Name Accession Description Interval E-value
REC_OmpR cd17574
phosphoacceptor receiver (REC) domain of OmpR family response regulators; OmpR-like proteins ...
59-135 6.13e-03

phosphoacceptor receiver (REC) domain of OmpR family response regulators; OmpR-like proteins are one of the most widespread transcriptional regulators. OmpR family members contain REC and winged helix-turn-helix (wHTH) DNA-binding output effector domain. They are involved in the control of environmental stress tolerance (such as the oxidative, osmotic and acid stress response), motility, virulence, outer membrane biogenesis and other processes. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381116 [Multi-domain]  Cd Length: 99  Bit Score: 35.08  E-value: 6.13e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489112050  59 YLAYALSRHlfsGTRTAVFQSVESALPSMQEPVIsQLVI-DIeslTLPYFDILERLRQLIKQRNDIQIfIMLSSRDED 135
Cdd:cd17574   12 LLSDYLEKE---GYEVDTAADGEEALELAREEQP-DLIIlDV---MLPGMDGFEVCRRLREKGSDIPI-IMLTAKDEE 81
 
Name Accession Description Interval E-value
REC_OmpR cd17574
phosphoacceptor receiver (REC) domain of OmpR family response regulators; OmpR-like proteins ...
59-135 6.13e-03

phosphoacceptor receiver (REC) domain of OmpR family response regulators; OmpR-like proteins are one of the most widespread transcriptional regulators. OmpR family members contain REC and winged helix-turn-helix (wHTH) DNA-binding output effector domain. They are involved in the control of environmental stress tolerance (such as the oxidative, osmotic and acid stress response), motility, virulence, outer membrane biogenesis and other processes. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381116 [Multi-domain]  Cd Length: 99  Bit Score: 35.08  E-value: 6.13e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489112050  59 YLAYALSRHlfsGTRTAVFQSVESALPSMQEPVIsQLVI-DIeslTLPYFDILERLRQLIKQRNDIQIfIMLSSRDED 135
Cdd:cd17574   12 LLSDYLEKE---GYEVDTAADGEEALELAREEQP-DLIIlDV---MLPGMDGFEVCRRLREKGSDIPI-IMLTAKDEE 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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