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Conserved domains on  [gi|489079718|ref|WP_002989656|]
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CsbD family protein [Streptococcus pyogenes]

Protein Classification

CsbD family protein( domain architecture ID 10007103)

CsbD family protein similar to Lactococcus lactis UPF0337 protein YhjA

CATH:  1.10.1470.10
SCOP:  4002850

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
yjbJ COG3237
Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];
1-64 1.84e-08

Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];


:

Pssm-ID: 442469 [Multi-domain]  Cd Length: 65  Bit Score: 45.55  E-value: 1.84e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489079718  1 MSDEKYNAKLDQAGGKLKEGFGKISGDKSLETEGKVDKVTGKIKEVIADAKDTVKGLAKGLDNK 64
Cdd:COG3237   1 MNKDKIKGKWKQLKGKAKEAWGKLTDDDLLEAEGKADQLKGKLQEAYGDAKDAAKKAVDDWKDK 64
 
Name Accession Description Interval E-value
yjbJ COG3237
Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];
1-64 1.84e-08

Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];


Pssm-ID: 442469 [Multi-domain]  Cd Length: 65  Bit Score: 45.55  E-value: 1.84e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489079718  1 MSDEKYNAKLDQAGGKLKEGFGKISGDKSLETEGKVDKVTGKIKEVIADAKDTVKGLAKGLDNK 64
Cdd:COG3237   1 MNKDKIKGKWKQLKGKAKEAWGKLTDDDLLEAEGKADQLKGKLQEAYGDAKDAAKKAVDDWKDK 64
CsbD pfam05532
CsbD-like; CsbD is a bacterial general stress response protein. It's expression is mediated by ...
 4-56 7.90e-07

CsbD-like; CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.


Pssm-ID: 428512  Cd Length: 53  Bit Score: 40.96  E-value: 7.90e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 489079718   4 EKYNAKLDQAGGKLKEGFGKISGDKSLETEGKVDKVTGKIKEVIADAKDTVKG 56
Cdd:pfam05532  1 DKIEGKAEQVKGKVKEAWGKATGDEKLEAEGKADQLKGKAQQKYGDAKDAAKD 53
 
Name Accession Description Interval E-value
yjbJ COG3237
Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];
1-64 1.84e-08

Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];


Pssm-ID: 442469 [Multi-domain]  Cd Length: 65  Bit Score: 45.55  E-value: 1.84e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489079718  1 MSDEKYNAKLDQAGGKLKEGFGKISGDKSLETEGKVDKVTGKIKEVIADAKDTVKGLAKGLDNK 64
Cdd:COG3237   1 MNKDKIKGKWKQLKGKAKEAWGKLTDDDLLEAEGKADQLKGKLQEAYGDAKDAAKKAVDDWKDK 64
CsbD pfam05532
CsbD-like; CsbD is a bacterial general stress response protein. It's expression is mediated by ...
 4-56 7.90e-07

CsbD-like; CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.


Pssm-ID: 428512  Cd Length: 53  Bit Score: 40.96  E-value: 7.90e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 489079718   4 EKYNAKLDQAGGKLKEGFGKISGDKSLETEGKVDKVTGKIKEVIADAKDTVKG 56
Cdd:pfam05532  1 DKIEGKAEQVKGKVKEAWGKATGDEKLEAEGKADQLKGKAQQKYGDAKDAAKD 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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