|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
1-530 |
0e+00 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 1016.20 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 1 MTAKTAPKITLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVLTLLPWLDMPLLQAIFIWMSKVGSFAFSFLPVM 80
Cdd:PRK10110 1 MTAKTAPKVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVITLIPFLGNPVLQAIFTWMSKIGSFAFSFLPVM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 81 FCIAIPLGLARENKGVAAFAGFVGYAVMNLAVNFWLTAKGILPTTDAAILKANNIQNIIGIPSIDTGILGAVIAGIIVWL 160
Cdd:PRK10110 81 FCIAIPLGLARENKGVAAFAGFVGYAVMNLAVNFWLTNKGILPTTDAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 161 LHERFHNIRLPDALAFFGGTRFVPIVTTVVLGLVGLAIPLVWPVFAMGINALGKMINSAGDFGPMIFGTGERLLLPFGLH 240
Cdd:PRK10110 161 LHERFHNIRLPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 241 HILVALIRFTEAGGTLDVCGHSVSGALTIFQAQLSCPTTHGFAESATRFLSQGKMPAFLGGLPGAALAMYHCARPENRHK 320
Cdd:PRK10110 241 HILVALIRFTDAGGTQEVCGQTVSGALTIFQAQLSCPTTHGFSESATRFLSQGKMPAFLGGLPGAALAMYHCARPENRHK 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 321 IKGLLISGVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTIMAVLGVTIGNTDGNIIDFVVFGILHGLATKWYLV 400
Cdd:PRK10110 321 IKGLLISGVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIGNTDGNIIDFVVFGILHGLSTKWYMV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 401 PVVAAIWFAVYYAIFRFAITRFNLKTPGRDIDTAASVEKAVAGTIGKSGYNVPAILAALGGAENIVSLDNCITRLRLSVH 480
Cdd:PRK10110 401 PVVAAIWFVVYYVIFRFAITRFNLKTPGRDSEVASSIEKAVAGAPGKSGYNVPAILEALGGADNIVSLDNCITRLRLSVK 480
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 488992500 481 DMSKVDAAALKAHRAIGVVQLNQHNLQVVIGPQVQSVKDEMATLMNTVQA 530
Cdd:PRK10110 481 DMSLVDVQALKDNRAIGVVQLNQHNLQVVIGPQVQSVKDEMAGLMHTVQA 530
|
|
| PTS-IIBC-malX |
TIGR02004 |
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS ... |
8-525 |
0e+00 |
|
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273924 [Multi-domain] Cd Length: 517 Bit Score: 726.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 8 KITLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVLTLLPWLDMPLLQAIFIWMSKVGSFAFSFLPVMFCIAIPL 87
Cdd:TIGR02004 1 KATFWEFFQGLGKTFMLPVALLAFMGILLGLGSSFSSEAMIETIPFLGKPAFKIIFQWMSTIGLVAFAYLPVMFAMAIPL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 88 GLARENKGVAAFAGFVGYAVMNLAVNFWLTAKGILPTTDAAIlkANNIQNIIGIPSIDTGILGAVIAGIIVWLLHERFHN 167
Cdd:TIGR02004 81 GLAREEKGVAAFSGFVGYTAMNLAINFYLTQTGVLVDPEQLR--EAGQGMVFGIQSIDTGVLGAVIVGLIVYKLHNRFYT 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 168 IRLPDALAFFGGTRFVPIVTTVVLGLVGLAIPLVWPVFAMGINALGKMINSAGDFGPMIFGTGERLLLPFGLHHILVALI 247
Cdd:TIGR02004 159 VQMPDALAFFGGARFVPIISALVLAVVGLVIPLVWPLFALMIMAIGQLIQRSGIFGPFLFGSGERLLLPIGLHHILVAMI 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 248 RFTEAGGTLDVCGHSVSGALTIFQAQLSCPTTHGFAESATRFLSQGKMPAFLGGLPGAALAMYHCARPENRHKIKGLLIS 327
Cdd:TIGR02004 239 RFTEAGGSAVVCGKEVSGALNIFYAELQCNLPISAVPSATAFLSQGKMPTFLGGLPGAALAMYHCARPANRHKIKALLLS 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 328 GVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTIMAVLGVTIGNTDGNIIDFVVFGILHGLATKWYLVPVVAAIW 407
Cdd:TIGR02004 319 GVVACAVGGITEPLEFLFLFVAPLLYLVHAILTGLGFMVMALLGVVIGNTDGNLIDFLVFGVLQGTYTKWYLVPIVAAIW 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 408 FAVYYAIFRFAITRFNLKTPGRD-IDTAASVEKAVAGTIGKSGYNVPAILAALGGAENIVSLDNCITRLRLSVHDMSKVD 486
Cdd:TIGR02004 399 FVVYYFVFKTAITTFDLKTPGREkVLDAEEYTEQEVAYKKTGGYDAAAILAALGGQENIQSLDNCITRLRLVVADANKVD 478
|
490 500 510
....*....|....*....|....*....|....*....
gi 488992500 487 AAALKAHRAIGVVQLNQHNLQVVIGPQVQSVKDEMATLM 525
Cdd:TIGR02004 479 DAKLKQLGALGVVKLDAHNVQVVIGTQVTTVKNQLEMIL 517
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
11-521 |
1.41e-79 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 256.41 E-value: 1.41e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 11 LWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVLTllpwlDMPLLQAIFIWMSKVGSFAFSFLPVMFCIAIPLGLA 90
Cdd:COG1263 8 LFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLG-----EGSFLSGTYQILNAAGDAVFYFLPLLFAIGAAKGFG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 91 renkGVAAFAGFVGYAVMNlavnfwltakgilPTTDAAILKANNIQNIIGIPSI---DTGILGAVIAGIIVWLLhERFHN 167
Cdd:COG1263 83 ----GNPALAAVIGYLLVH-------------PTLLNAYAVAGGYISFLGIPTLigyQGGVFPGILAGWLAAYL-EKFLK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 168 IRLPDALAFFggtrFVPIVTTVVLGLVGL-AIPLVWPVFAMGIN-ALGKMINSAGDFGPMIFGTGERLLLPFGLHHILVA 245
Cdd:COG1263 145 KKLPDALGFF----FVPILTLLIMVPLALlVIGPIWPPIGNGIAaGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNP 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 246 LIRFtEAGGTldvcghsvsGALTIFQAqlscptthgfaesatrflsqgkMPAFLGGLPGAALAMYHCARPenRHKIKGLL 325
Cdd:COG1263 221 IFWF-LLGGT---------GDDGLFPI----------------------LAAAMFGQPGAALAVYLKAKP--NKKVKGLA 266
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 326 ISGVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTIMAVLGVTI-GNTDGNIIDFVVFgiLHGLATKWyLVPVVA 404
Cdd:COG1263 267 ISAALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAfSFGVGGLIDFPSI--LNPGATNL-LLYLIG 343
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 405 AIWFAVYYAIFRFAItrfnlktpGRDIDTAASVEKAVAGTIGKSGYNVPAILAALGGAENIVSLDNCITRLRLSVHDMSK 484
Cdd:COG1263 344 LVIAFVYYFVFTFLI--------GREDEEEEEKLATKADAKKEEAEAAAAALGGGGGLLLLEADITVLLLTLVDVVIVVV 415
|
490 500 510
....*....|....*....|....*....|....*..
gi 488992500 485 VDAAALKAHRAIGVVQLNQHNLQVVIGPQVQSVKDEM 521
Cdd:COG1263 416 KDVVKLAAAGAVVVGVGGVGAVGGVGGGGVVIVIVII 452
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
19-361 |
2.82e-60 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 201.42 E-value: 2.82e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 19 GKTFMLPVALLSFCGIMLGIGSSLSShdvLTLLPWLDMPLLQAIFIWMSKVGSFAFSFLPVMFCIAIPLGLArENKGVAA 98
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGNLPND---TTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLA-GGDGVAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 99 FAGFVGYAVMNL--AVNFWLTAKGIlpttdaailkaNNIQNIIGIPSIDTGILGAVIAGIIVWLLHERFHN---IRLPDA 173
Cdd:pfam02378 77 AAGLIGLLSFNLaaAISVALTAAGL-----------SGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKnitIKLPDS 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 174 LAFFGGTRFVPIVTT-VVLGLVGLAIPLVWPVFAMGINALGKMINSAG-DFGPMIFGTGERLLLPFGLHHILVALIRFTE 251
Cdd:pfam02378 146 LPFFVGKRFVPIITGfVTLLVIGPVLGLIWPAIQGGLNALGLLLIIAGgILGGLIFGFLERLLWPFGLHGAFIAIFWFLP 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 252 AGGTLDVCGHSVSGAltifqaqlscptthgfaesATRFLSQGKMPAFLGGlPGAALAMYHCARPENRHKIKGLLISGVIA 331
Cdd:pfam02378 226 IGGSNPIANQQAYGA-------------------GAAHILTGGFDVMFGG-PGATLALYAAAFLFKKSKVKKLLGSAALT 285
|
330 340 350
....*....|....*....|....*....|
gi 488992500 332 CVVGGTTEPLEFLFLFVAPVLYVIHALLTG 361
Cdd:pfam02378 286 PFLFGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
452-525 |
2.29e-28 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 107.62 E-value: 2.29e-28
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488992500 452 VPAILAALGGAENIVSLDNCITRLRLSVHDMSKVDAAALKAHRAIGVVQLNQHNLQVVIGPQV-QSVKDEMATLM 525
Cdd:cd00212 4 AKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVaDVYKEAIKLLG 78
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
1-530 |
0e+00 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 1016.20 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 1 MTAKTAPKITLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVLTLLPWLDMPLLQAIFIWMSKVGSFAFSFLPVM 80
Cdd:PRK10110 1 MTAKTAPKVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVITLIPFLGNPVLQAIFTWMSKIGSFAFSFLPVM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 81 FCIAIPLGLARENKGVAAFAGFVGYAVMNLAVNFWLTAKGILPTTDAAILKANNIQNIIGIPSIDTGILGAVIAGIIVWL 160
Cdd:PRK10110 81 FCIAIPLGLARENKGVAAFAGFVGYAVMNLAVNFWLTNKGILPTTDAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 161 LHERFHNIRLPDALAFFGGTRFVPIVTTVVLGLVGLAIPLVWPVFAMGINALGKMINSAGDFGPMIFGTGERLLLPFGLH 240
Cdd:PRK10110 161 LHERFHNIRLPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 241 HILVALIRFTEAGGTLDVCGHSVSGALTIFQAQLSCPTTHGFAESATRFLSQGKMPAFLGGLPGAALAMYHCARPENRHK 320
Cdd:PRK10110 241 HILVALIRFTDAGGTQEVCGQTVSGALTIFQAQLSCPTTHGFSESATRFLSQGKMPAFLGGLPGAALAMYHCARPENRHK 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 321 IKGLLISGVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTIMAVLGVTIGNTDGNIIDFVVFGILHGLATKWYLV 400
Cdd:PRK10110 321 IKGLLISGVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIGNTDGNIIDFVVFGILHGLSTKWYMV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 401 PVVAAIWFAVYYAIFRFAITRFNLKTPGRDIDTAASVEKAVAGTIGKSGYNVPAILAALGGAENIVSLDNCITRLRLSVH 480
Cdd:PRK10110 401 PVVAAIWFVVYYVIFRFAITRFNLKTPGRDSEVASSIEKAVAGAPGKSGYNVPAILEALGGADNIVSLDNCITRLRLSVK 480
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 488992500 481 DMSKVDAAALKAHRAIGVVQLNQHNLQVVIGPQVQSVKDEMATLMNTVQA 530
Cdd:PRK10110 481 DMSLVDVQALKDNRAIGVVQLNQHNLQVVIGPQVQSVKDEMAGLMHTVQA 530
|
|
| PTS-IIBC-malX |
TIGR02004 |
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS ... |
8-525 |
0e+00 |
|
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273924 [Multi-domain] Cd Length: 517 Bit Score: 726.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 8 KITLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVLTLLPWLDMPLLQAIFIWMSKVGSFAFSFLPVMFCIAIPL 87
Cdd:TIGR02004 1 KATFWEFFQGLGKTFMLPVALLAFMGILLGLGSSFSSEAMIETIPFLGKPAFKIIFQWMSTIGLVAFAYLPVMFAMAIPL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 88 GLARENKGVAAFAGFVGYAVMNLAVNFWLTAKGILPTTDAAIlkANNIQNIIGIPSIDTGILGAVIAGIIVWLLHERFHN 167
Cdd:TIGR02004 81 GLAREEKGVAAFSGFVGYTAMNLAINFYLTQTGVLVDPEQLR--EAGQGMVFGIQSIDTGVLGAVIVGLIVYKLHNRFYT 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 168 IRLPDALAFFGGTRFVPIVTTVVLGLVGLAIPLVWPVFAMGINALGKMINSAGDFGPMIFGTGERLLLPFGLHHILVALI 247
Cdd:TIGR02004 159 VQMPDALAFFGGARFVPIISALVLAVVGLVIPLVWPLFALMIMAIGQLIQRSGIFGPFLFGSGERLLLPIGLHHILVAMI 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 248 RFTEAGGTLDVCGHSVSGALTIFQAQLSCPTTHGFAESATRFLSQGKMPAFLGGLPGAALAMYHCARPENRHKIKGLLIS 327
Cdd:TIGR02004 239 RFTEAGGSAVVCGKEVSGALNIFYAELQCNLPISAVPSATAFLSQGKMPTFLGGLPGAALAMYHCARPANRHKIKALLLS 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 328 GVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTIMAVLGVTIGNTDGNIIDFVVFGILHGLATKWYLVPVVAAIW 407
Cdd:TIGR02004 319 GVVACAVGGITEPLEFLFLFVAPLLYLVHAILTGLGFMVMALLGVVIGNTDGNLIDFLVFGVLQGTYTKWYLVPIVAAIW 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 408 FAVYYAIFRFAITRFNLKTPGRD-IDTAASVEKAVAGTIGKSGYNVPAILAALGGAENIVSLDNCITRLRLSVHDMSKVD 486
Cdd:TIGR02004 399 FVVYYFVFKTAITTFDLKTPGREkVLDAEEYTEQEVAYKKTGGYDAAAILAALGGQENIQSLDNCITRLRLVVADANKVD 478
|
490 500 510
....*....|....*....|....*....|....*....
gi 488992500 487 AAALKAHRAIGVVQLNQHNLQVVIGPQVQSVKDEMATLM 525
Cdd:TIGR02004 479 DAKLKQLGALGVVKLDAHNVQVVIGTQVTTVKNQLEMIL 517
|
|
| PTS-II-BC-glcB |
TIGR02002 |
PTS system, glucose-specific IIBC component; This model represents the combined B and C ... |
16-525 |
5.69e-131 |
|
PTS system, glucose-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273923 [Multi-domain] Cd Length: 502 Bit Score: 390.68 E-value: 5.69e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 16 QQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVLTLLPWLDMPLLQAIFIWMSKVGSFAFSFLPVMFCIAIPLGLAReNKG 95
Cdd:TIGR02002 9 QKIGKALMLPVAVLPVAGILLGFGNANQNNQVFSFLPFLHMEWIQLVSKVMEAAGGIIFANLPLIFAIGVALGLAG-NDG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 96 VAAFAGFVGYAVMNLAVNFWLTAKGILPTTDAAilkanNIQNIIGIPSIDTGILGAVIAGIIVWLLHERFHNIRLPDALA 175
Cdd:TIGR02002 88 VAGLAALVGYLIMNKTMGVVAGLTLLLIASEIA-----SFASVLGIPTLQTGVFGGIIIGAIAAYCYNRFYNIKLPEYLG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 176 FFGGTRFVPIVTTVVLGLVGLAIPLVWPVFAMGINALGK-MINSAGDFGPMIFGTGERLLLPFGLHHILVALIRFtEAGG 254
Cdd:TIGR02002 163 FFAGKRFVPIITGLAAIVTGIVLSFIWPPVQDALNTFSHwAAYQNPVVAFFIFGFIERSLIPFGLHHIFNAPFWF-EFGS 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 255 TLDVCGHSVSGALTIFQAQLSCPTthgfAESATRFLSqGKMPAFLGGLPGAALAMYHCARPENRHKIKGLLISGVIACVV 334
Cdd:TIGR02002 242 YTNEAGNLFRGDQPIFMAQLKDGV----AFTAGGFLS-GGFPFMMFGLPAAALAIYHSAKPENKKLVGGLMISAALTSFL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 335 GGTTEPLEFLFLFVAPVLYVIHALLTGLGFTIMAVLGVTIGNT-DGNIIDFVVFGILHGlATKWYLVPVVAAIWFAVYYA 413
Cdd:TIGR02002 317 TGITEPLEFSFLFVAPILYVIHAILAGLSFPIMILLGVKIGTTfSGGAIDFILYGLLSN-RSKAWLFIIVGIGYAIIYYF 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 414 IFRFAITRFNLKTPGRDIDTAasvEKAVAGTIGKSGynvPAILAALGGAENIVSLDNCITRLRLSVHDMSKVDAAALKAH 493
Cdd:TIGR02002 396 LFRFLIKKLNLKTPGREDATA---EAKATGEPSELA---FDVVAALGGKENITSLDACITRLRVSVADISKVDVAKLKKL 469
|
490 500 510
....*....|....*....|....*....|..
gi 488992500 494 RAIGVVQLNqHNLQVVIGPQVQSVKDEMATLM 525
Cdd:TIGR02002 470 GAAGVLVVG-NNVQAIFGPKSDTIKSEMHDII 500
|
|
| PTS-II-BC-nag |
TIGR01998 |
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B ... |
13-521 |
1.05e-118 |
|
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273920 [Multi-domain] Cd Length: 475 Bit Score: 358.31 E-value: 1.05e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 13 EFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDvltllpwldmpLLQAIFiwMSKVGSFAFSFLPVMFCIAIPLGLARE 92
Cdd:TIGR01998 3 GYFQKLGRALMLPIATLPVAALLLRIGNATHGAD-----------LLVANF--FIAAGGAIFDNLGLLFAIGVAIGMSKD 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 93 NKGVAAFAGFVGY--AVMNLAVNFWLTAKGILPTTDAAILKANNIqnIIGIpsidtgilgavIAGIIVWLLHERFHNIRL 170
Cdd:TIGR01998 70 NDGAAALAGLVAYfvVTKVLSPPPLAAALGIKSEINMAFSAWKNV--FVGI-----------LAGLIAGALYNRFSEIKL 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 171 PDALAFFGGTRFVPIVTTVVLGLVGLAIPLVWPVFAMGINALGKMINSAGDFGPMIFGTGERLLLPFGLHHILVALIRFT 250
Cdd:TIGR01998 137 PEALSFFSGKRLVPIMAGFVGLVLAALLGYVWPTLYGGIVAFGESISGLGALGAGIYGFLNRLLIPTGLHHALNSVFWFD 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 251 EAGgtldvcghsvsgaLTIFQAQLSCPTTHGFAESATRFLSqGKMPAFLGGLPGAALAMYHCARPENRHKIKGLLISGVI 330
Cdd:TIGR01998 217 VAG-------------INDFGNFTGGGDLNRFKGIAGMFMA-GFFPIMMFGLPAAALAMYHTARPERRKQVGGMLLSVAF 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 331 ACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTIMAVLGVTIG-NTDGNIIDFVVFGILhGLATKWYLVPVVAAIWFA 409
Cdd:TIGR01998 283 ASFLTGVTEPLEFSFMFLAPVLYALHALLTGLSLFIAAMLHWTAGfSFSAGLIDYVLSFNN-PTANQPLMLLVQGLVFFA 361
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 410 VYYAIFRFAITRFNLKTPGRDIDTAASVEKAVAGTIGKSGYNVPA-ILAALGGAENIVSLDNCITRLRLSVHDMSKVDAA 488
Cdd:TIGR01998 362 LYYVVFRFAIRRFNLKTPGREDEDPEGATAAAVTSTGDSKMQLAKqYLAALGGHDNLVSIDACITRLRLTLKDTSIVDEP 441
|
490 500 510
....*....|....*....|....*....|...
gi 488992500 489 ALKAHRAIGVVQLNQHNLQVVIGPQVQSVKDEM 521
Cdd:TIGR01998 442 ALKALGARGVVKLGKHNLQVILGPLAEIVAGEM 474
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
16-521 |
2.06e-101 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 313.57 E-value: 2.06e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 16 QQLGKTFMLPVALLSFCGIMLGIGSSLsshdvltlLPWLDMPLLQAifiwMSKVGSFAFSFLPVMFCIAIPLGLAReNKG 95
Cdd:PRK11089 10 QKVGKSLMLPVSVLPIAGILLGVGSAN--------FSWLPAVVSHV----MAEAGGSVFANMPLIFAIGVALGFTN-NDG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 96 VAAFAGFVGYAVM--NLAVNfwltakgilpttdAAILKANNIQNIIGIPSIDTGILGAVIAGIIVWLLHERFHNIRLPDA 173
Cdd:PRK11089 77 VSALAAVVAYGIMvkTMAVV-------------APLVLHLPAEEIAAKHLADTGVLGGIIAGAIAAYMFNRFYRIKLPEY 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 174 LAFFGGTRFVPIVTTVVLGLVGLAIPLVWPVFAMGINALGKMI---NSAGDFGpmIFGTGERLLLPFGLHHILVALIRFt 250
Cdd:PRK11089 144 LGFFAGKRFVPIISGLAAIFTGVVLSFIWPPIGSAIQTFSQWAayqNPVVAFG--IYGFVERSLVPFGLHHIWNVPFQM- 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 251 EAGGTLDVCGHSVSGALTIFQAqlscptthgfAESATRFLSQG---KMpaflGGLPGAALAMYHCARPENRHKIKGLLIS 327
Cdd:PRK11089 221 QIGEYTNAAGQVFHGDIPRYMA----------GDPTAGKLSGGflfKM----YGLPAAAIAIWHSAKPENRAKVGGIMIS 286
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 328 GVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTIMAVLGVTIGNTDGN-IIDFVVfgiLHGLATKWYLVPVVAAI 406
Cdd:PRK11089 287 AALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDGTSFSHgLIDFIV---LSGNSSKLWLFPIVGIG 363
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 407 WFAVYYAIFRFAITRFNLKTPGRDIDTAasvEKAVAGTIGKSGYnvpaILAALGGAENIVSLDNCITRLRLSVHDMSKVD 486
Cdd:PRK11089 364 YAIVYYTIFRVLIKALDLKTPGREDETE---DAKATGTSEMAPA----LVAAFGGKENITNLDACITRLRVSVADVSKVD 436
|
490 500 510
....*....|....*....|....*....|....*
gi 488992500 487 AAALKAHRAIGVVqLNQHNLQVVIGPQVQSVKDEM 521
Cdd:PRK11089 437 QAGLKKLGAAGVV-VAGSGVQAIFGTKSDNLKTEM 470
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
70-372 |
3.15e-85 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 265.34 E-value: 3.15e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 70 GSFAFSFLPVMFCIAIPLGLARENKGVAAFAGFVGYAVMNLAVNFWLTAKGILPTTDAAILKanniqniigipsiDTGIL 149
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVGAQAVGNFFGFEIAKVG-------------YTGVV 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 150 GAVIAGIIVWLLHERFHNIRLPDALAFFGGTRFVPIVTTVVLGLVGLAIPLVWPVFamGINALGKMINSAG-DFGPMIFG 228
Cdd:TIGR00852 68 GPIIVGAIALALHERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPV--GISALLHWLYSAGgALGGAIFG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 229 TGERLLLPFGLHHILVALIRFTEAGGTLDVCGHSVSGALTIFQAQLSCPTTHGFAESATRFLSQGKMPAFLGGLPGAALA 308
Cdd:TIGR00852 146 FLYRLLVPTGLHHIFYAIFIQLIAGGTVIGGGQVIPGDALANMAQGGAALAVFFTAGDAKFKSIGLPAAFSAGLGITEPA 225
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488992500 309 MYHCARPENRHKIKGLLISGVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTIMAVLGV 372
Cdd:TIGR00852 226 MYGVALRERRPFVAGLIGSALLTAFLTGITEPLEFLFLFGAPGLYSIHAVLAGSIFTVAIGMGI 289
|
|
| PTS-IIBC-alpha |
TIGR02005 |
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused ... |
15-525 |
1.46e-80 |
|
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273925 [Multi-domain] Cd Length: 524 Bit Score: 260.90 E-value: 1.46e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 15 FQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVLTLLPWLDMPLLQAIFIwMSKVGSFAFSFLPVMFCIAIPLGLARENK 94
Cdd:TIGR02005 4 IQRFGGAMFVPVLLFAFAGIVVGFAILFKNPDIMGSLADQNTFWYKFWSV-IEEGGWTVFRQMPLIFVVGLPIGLAKKAQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 95 GVAAFAGFVGYAVMNLAVN----FWLTAKGILPTTDAAIlKANNIQNIIGIPSIDTGILGA-VIAGIIVWLlHERFHNIR 169
Cdd:TIGR02005 83 GRACLAALMGYLTFNYFINailtQWGSSFGVNFTQGVGV-GVSGLTSIAGIKTLDTSIIGAiIISGIITYI-HNRFFDKR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 170 LPDALAFFGGTRFVPIVTTVVLGLVGLAIPLVWPVFAMGINALGKMINSAGDFGPMIFGTGERLLLPFGLHHILVALIRF 249
Cdd:TIGR02005 161 LPVFLGIFQGTTFVVTIAFFVMLPCAAITCLVWPKVQMGIGSLQAFLISSGYIGVWLYTFLERILIPTGLHHFIYGPFIF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 250 TEAggtldvcghSVSGALTIFQAQlscpTTHGFAESAT---------RFLSQGKMPAFlgGLPGAALAMYHCARPENRHK 320
Cdd:TIGR02005 241 GPA---------VVNHGIQAYWAQ----HLNEFAKSTKplkelfpygGFALHGNSKVF--GCLGIALAMYATAPPENRKK 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 321 IKGLLISGVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTIMAVLGVtIGNTDGNIIDFVVFGILHGLATKW--Y 398
Cdd:TIGR02005 306 VAGLLIPATLTAVVVGITEPLEFTFLFIAPYLFVVHAVLAASMATVMYAFGV-VGNMGGGLIDFIATNWLPLFKNHWgtY 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 399 LVPVVAAIWF-AVYYAIFRFAITRFNLKTPGRDID------------TAASVEKAVAGTIGKSGYNVPAILAALGGAENI 465
Cdd:TIGR02005 385 VTQIIIGLCFtAIYFLVFRFLILKFNIPTPGREDTeeevklyskadyKAKKGDSVESKRASSGNDKAAYFLQALGGKENI 464
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488992500 466 VSLDNCITRLRLSVHDMSKV-DAAALKAHRAIGVVQlNQHNLQVVIGPQVQSVKDEMATLM 525
Cdd:TIGR02005 465 KDVTNCATRLRISVKDESKVlDDEVFKKAGAHGVVR-SGKAIQVIVGLSVPQVREAFEQLV 524
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
14-521 |
1.18e-79 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 262.11 E-value: 1.18e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 14 FFQQLGKTFMLPVALLSFCGIMLGIGSSlsshdvltllpwldmPLLQAIFIwmSKVGSFAFSFLPVMFCIAIPLGLAREN 93
Cdd:PRK10255 6 FFQRLGRALQLPIAVLPVAALLLRFGQP---------------DLLNVAFI--AQAGGAIFDNLALIFAIGVASSWSKDS 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 94 KGVAAFAGFVGYAVMNlavnfwltakgilpttdAAILKANniqniigiPSIDTGILGAVIAGIIVWLLHERFHNIRLPDA 173
Cdd:PRK10255 69 AGAAALAGAVGYFVLT-----------------KAMVTIN--------PEINMGVLAGIITGLVGGAAYNRWSDIKLPDF 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 174 LAFFGGTRFVPIVTTVVLGLVGLAIPLVWPVFAMGINALGKMINSAGDFGPMIFGTGERLLLPFGLHHILVALIRFtEAG 253
Cdd:PRK10255 124 LSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIHAGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWF-QIG 202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 254 GTLDVCGHSVSGALTIFQAQlscptthgfAESATRFLSqGKMPAFLGGLPGAALAMYHCARPENRHKIKGLLISGVIACV 333
Cdd:PRK10255 203 EFTNAAGTVFHGDINRFYAG---------DGTAGMFMS-GFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAF 272
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 334 VGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTIMAVLGVTIG-NTDGNIIDFVVFGILHGLATKWYLVPVVAAIWFAVYY 412
Cdd:PRK10255 273 LTGVTEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGfSFSAGAIDYALMYNLPAASQNVWMLLVMGVVFFAIYF 352
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 413 AIFRFAITRFNLKTPGRDiDTAASVEKAVAGTIGKSGYNVPA--ILAALGGAENIVSLDNCITRLRLSVHDMSKVDAAAL 490
Cdd:PRK10255 353 VLFSAVIRMFNLKTPGRE-DKEDEIVTEEANSNTEEGLTQLAtnYIAAVGGTDNLKAIDACITRLRLTVADSARVNDAMC 431
|
490 500 510
....*....|....*....|....*....|.
gi 488992500 491 KAHRAIGVVQLNQHNLQVVIGPQVQSVKDEM 521
Cdd:PRK10255 432 KRLGASGVVKLNKQTIQVIVGAKAESIGDAM 462
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
11-521 |
1.41e-79 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 256.41 E-value: 1.41e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 11 LWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVLTllpwlDMPLLQAIFIWMSKVGSFAFSFLPVMFCIAIPLGLA 90
Cdd:COG1263 8 LFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLG-----EGSFLSGTYQILNAAGDAVFYFLPLLFAIGAAKGFG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 91 renkGVAAFAGFVGYAVMNlavnfwltakgilPTTDAAILKANNIQNIIGIPSI---DTGILGAVIAGIIVWLLhERFHN 167
Cdd:COG1263 83 ----GNPALAAVIGYLLVH-------------PTLLNAYAVAGGYISFLGIPTLigyQGGVFPGILAGWLAAYL-EKFLK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 168 IRLPDALAFFggtrFVPIVTTVVLGLVGL-AIPLVWPVFAMGIN-ALGKMINSAGDFGPMIFGTGERLLLPFGLHHILVA 245
Cdd:COG1263 145 KKLPDALGFF----FVPILTLLIMVPLALlVIGPIWPPIGNGIAaGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNP 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 246 LIRFtEAGGTldvcghsvsGALTIFQAqlscptthgfaesatrflsqgkMPAFLGGLPGAALAMYHCARPenRHKIKGLL 325
Cdd:COG1263 221 IFWF-LLGGT---------GDDGLFPI----------------------LAAAMFGQPGAALAVYLKAKP--NKKVKGLA 266
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 326 ISGVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTIMAVLGVTI-GNTDGNIIDFVVFgiLHGLATKWyLVPVVA 404
Cdd:COG1263 267 ISAALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAfSFGVGGLIDFPSI--LNPGATNL-LLYLIG 343
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 405 AIWFAVYYAIFRFAItrfnlktpGRDIDTAASVEKAVAGTIGKSGYNVPAILAALGGAENIVSLDNCITRLRLSVHDMSK 484
Cdd:COG1263 344 LVIAFVYYFVFTFLI--------GREDEEEEEKLATKADAKKEEAEAAAAALGGGGGLLLLEADITVLLLTLVDVVIVVV 415
|
490 500 510
....*....|....*....|....*....|....*..
gi 488992500 485 VDAAALKAHRAIGVVQLNQHNLQVVIGPQVQSVKDEM 521
Cdd:COG1263 416 KDVVKLAAAGAVVVGVGGVGAVGGVGGGGVVIVIVII 452
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
19-361 |
2.82e-60 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 201.42 E-value: 2.82e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 19 GKTFMLPVALLSFCGIMLGIGSSLSShdvLTLLPWLDMPLLQAIFIWMSKVGSFAFSFLPVMFCIAIPLGLArENKGVAA 98
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGNLPND---TTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLA-GGDGVAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 99 FAGFVGYAVMNL--AVNFWLTAKGIlpttdaailkaNNIQNIIGIPSIDTGILGAVIAGIIVWLLHERFHN---IRLPDA 173
Cdd:pfam02378 77 AAGLIGLLSFNLaaAISVALTAAGL-----------SGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKnitIKLPDS 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 174 LAFFGGTRFVPIVTT-VVLGLVGLAIPLVWPVFAMGINALGKMINSAG-DFGPMIFGTGERLLLPFGLHHILVALIRFTE 251
Cdd:pfam02378 146 LPFFVGKRFVPIITGfVTLLVIGPVLGLIWPAIQGGLNALGLLLIIAGgILGGLIFGFLERLLWPFGLHGAFIAIFWFLP 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 252 AGGTLDVCGHSVSGAltifqaqlscptthgfaesATRFLSQGKMPAFLGGlPGAALAMYHCARPENRHKIKGLLISGVIA 331
Cdd:pfam02378 226 IGGSNPIANQQAYGA-------------------GAAHILTGGFDVMFGG-PGATLALYAAAFLFKKSKVKKLLGSAALT 285
|
330 340 350
....*....|....*....|....*....|
gi 488992500 332 CVVGGTTEPLEFLFLFVAPVLYVIHALLTG 361
Cdd:pfam02378 286 PFLFGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
454-525 |
1.57e-30 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 113.67 E-value: 1.57e-30
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488992500 454 AILAALGGAENIVSLDNCITRLRLSVHDMSKVDAAALKAHRAIGVVQlNQHNLQVVIGPQVQSVKDEMATLM 525
Cdd:COG1264 6 DILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKLGVKGVVK-NGGQVQVIIGPGVDKVADEIEKLL 76
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
452-525 |
2.29e-28 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 107.62 E-value: 2.29e-28
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488992500 452 VPAILAALGGAENIVSLDNCITRLRLSVHDMSKVDAAALKAHRAIGVVQLNQHNLQVVIGPQV-QSVKDEMATLM 525
Cdd:cd00212 4 AKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVaDVYKEAIKLLG 78
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
420-511 |
6.39e-27 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 103.98 E-value: 6.39e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 420 TRFNLKTPGRdidTAASVEKAVAGTIGKSGYNVPAILAALGGAENIVSLDNCITRLRLSVHDMSKVDAAALKAHRAIGVV 499
Cdd:TIGR00826 1 TRLRLKTPGR---EKADEEAIAAGEGVKGVFTAAGQIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKLGAHGVN 77
|
90
....*....|..
gi 488992500 500 QLnQHNLQVVIG 511
Cdd:TIGR00826 78 PL-QRAVQVISG 88
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
410-530 |
6.89e-16 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 75.13 E-value: 6.89e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 410 VYYAIFRFAITRFNLKTPGRD---------IDTAASVEKAVAGTIGKSGYNVPAILAALGGAENIVSLDNCITRLRLSVH 480
Cdd:PRK09702 22 LYFVVFRTLILQFNMCTPGREdaevklyskAEYKASRGQTTAAEPKKELDQAAGILQALGGVGNISSINNCATRLRIALH 101
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 488992500 481 DMSK-VDAAALKAHRAIGVVQlNQHNLQVVIGPQVQSVKDEMATLMNTVQA 530
Cdd:PRK09702 102 DMSQtLDDEVFKKLGAHGVFR-SGDAIQVIIGLHVSQLREQLDSLINSHQS 151
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
454-484 |
4.56e-14 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 65.85 E-value: 4.56e-14
10 20 30
....*....|....*....|....*....|.
gi 488992500 454 AILAALGGAENIVSLDNCITRLRLSVHDMSK 484
Cdd:pfam00367 2 EILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
455-530 |
1.76e-09 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 60.08 E-value: 1.76e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488992500 455 ILAALGGAENIVSLDNCITRLRLSVHDMSKVDAAALKAHRAIGVVQLNQHNLQVVIGP-QVQSVKDEMATLMNTVQA 530
Cdd:PRK09586 12 ILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILSDDQVQVVLGPgKAQRAAKAMNELLGEAAA 88
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
455-517 |
1.59e-08 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 57.41 E-value: 1.59e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488992500 455 ILAALGGAENIVSLDNCITRLRLSVHDMSKVDAAALKAHRAIGVVQLNQHNLQVVIGPQVQSV 517
Cdd:PRK09824 10 IVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNPGVIMVVESGGQFQVVIGNHVADV 72
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
453-526 |
2.59e-08 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 56.34 E-value: 2.59e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488992500 453 PAILAALGGAENIVSLDNCITRLRLSVHDMSKVDAAALKAHRAIGVVQLNQHNLQVVIGPQVQSVKDEMATLMN 526
Cdd:PRK09796 10 RSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLLP 83
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
451-514 |
1.79e-05 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 47.37 E-value: 1.79e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488992500 451 NVPAILAALGGAENIVSLDNCITRLRLSVHDMSKVDAAALKAHRAIGVVQLNQHNLQVVIGPQV 514
Cdd:PRK11007 9 DIDRLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGTEV 72
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
435-527 |
1.65e-04 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 43.87 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 435 ASVEKAVAGTIGKSGYN-----VPAILAALGGAENIVSLDNCITRLRLSVHDMSKVDAAALKAHRAI-GVVQL-NQHnlQ 507
Cdd:PRK14905 256 ADALKALAGSKIDPIIHkfseiAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIDCVkGLFSIaNQY--Q 333
|
90 100
....*....|....*....|.
gi 488992500 508 VVIGPQ-VQSVKDEMATLMNT 527
Cdd:PRK14905 334 IILGAGiVEKIHEEMKALLAR 354
|
|
| UNC-93 |
pfam05978 |
Ion channel regulatory protein UNC-93; The proteins in this family are represented by UNC-93 ... |
27-199 |
6.91e-03 |
|
Ion channel regulatory protein UNC-93; The proteins in this family are represented by UNC-93 from Caenorhabditis elegans and also includes protein unc-93 homolog A (UNC93A), protein unc-93 homolog B1 (UNC93B1), and UNC93-like protein MFSD11 (also called major facilitator superfamily domain- containing protein 11 or protein ET). UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. UNC-93 acts as a regulatory subunit of a multi-subunit potassium channel complex that may function in coordinating muscle contraction in C. elegans. UNC93B1 controls intracellular trafficking and transport of a subset of Toll-like receptors (TLRs), including TLR3, TLR7 and TLR9, from the endoplasmic reticulum to endolysosomes where they can engage pathogen nucleotides and activate signaling cascades. MFSD11 is ubiquitously expressed in the periphery and the central nervous system of mice, where it is expressed in excitatory and inhibitory mouse brain neurons.
Pssm-ID: 461792 [Multi-domain] Cd Length: 379 Bit Score: 38.84 E-value: 6.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 27 ALLSFCGIMLGIGS--SLSSHDVLTLLPWLDMPLLQAIFIWMSKVGSFAFSFLPVMfciAIPLGLARENKGVAAFAGF-- 102
Cdd:pfam05978 103 AMLQSSLIGGGIFLfiVFQSGGQGDEISDGQIKLLYSVFTAISIVGIVVFAFLPSP---DYENVLSSKEKIQSFADQFks 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488992500 103 --------------VGYAVMNLAVNFWLtakGILPTTDAAILK-ANNIQNIIGIPSIDTGIlGAVIAGIIVWLLHERFHN 167
Cdd:pfam05978 180 tfrllrtpkmlllaVFFFYTGLEVSFWT---SIYPTCISFTSKlGTNTTYLIAIYSISTGL-GQIIGGIFFGPLGKRIRK 255
|
170 180 190
....*....|....*....|....*....|..
gi 488992500 168 IRLpDALAFFGGtrfvpIVTTVVLGLVGLAIP 199
Cdd:pfam05978 256 FGR-DPTILLGT-----LLHLVYFILIYLSFP 281
|
|
| |
