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Conserved domains on  [gi|488974783|ref|WP_002885674|]
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MULTISPECIES: biofilm peroxide resistance protein BsmA [Enterobacteriaceae]

Protein Classification

bioflm peroxide resistance protein BsmA( domain architecture ID 10014920)

bioflm peroxide resistance protein BsmA (also known as YjfO) is involved in protection of biofilms against oxidative stress

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK14864 PRK14864
biofilm peroxide resistance protein BsmA;
1-102 8.28e-50

biofilm peroxide resistance protein BsmA;


:

Pssm-ID: 184866  Cd Length: 104  Bit Score: 152.89  E-value: 8.28e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974783   1 MVMRRFSPWLLAIVLSGCSALQGTPEAPPPATDHPQEIQRYQTAGLQKMATVSVLMYGSPMDVEAALKAKAEAAKADYYV 80
Cdd:PRK14864   3 MVMRRFASLLLTLLLSACSALQGTPQPAPPPADHAQEIRRAQTQGLQKMGTVSALVRGSPDDAEREIQAKANAAGADYYV 82

                         90       100
                 ....*....|....*....|..
gi 488974783  81 IIMIDDTMVPGQWYSQAILYRR 102
Cdd:PRK14864  83 IVMVDETVVPGQWYSQAILYRK 104
 
Name Accession Description Interval E-value
PRK14864 PRK14864
biofilm peroxide resistance protein BsmA;
1-102 8.28e-50

biofilm peroxide resistance protein BsmA;


Pssm-ID: 184866  Cd Length: 104  Bit Score: 152.89  E-value: 8.28e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974783   1 MVMRRFSPWLLAIVLSGCSALQGTPEAPPPATDHPQEIQRYQTAGLQKMATVSVLMYGSPMDVEAALKAKAEAAKADYYV 80
Cdd:PRK14864   3 MVMRRFASLLLTLLLSACSALQGTPQPAPPPADHAQEIRRAQTQGLQKMGTVSALVRGSPDDAEREIQAKANAAGADYYV 82

                         90       100
                 ....*....|....*....|..
gi 488974783  81 IIMIDDTMVPGQWYSQAILYRR 102
Cdd:PRK14864  83 IVMVDETVVPGQWYSQAILYRK 104
YdgH_BhsA-like pfam07338
YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around ...
 46-100 5.16e-07

YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around 90 residues in length, including E. coli YdgH, YhcN, BhsA and McbA, which play a role in stress response, biofilm formation and pathogenesis. BhsA (also known as ComC) reduces the permeability of the outer membrane to copper and may decrease biofilm formation by repressing cell-cell interaction and cell surface interaction. Members of this entry have one copy of this domain with the exception of YdgH, which has three copies. The function of this domain is unknown, however, it is suggested to be directly involved in host-pathogen interaction.


Pssm-ID: 429417 [Multi-domain]  Cd Length: 55  Bit Score: 42.89  E-value: 5.16e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 488974783   46 LQKMATVSV-LMYGSPMDVEAALKAKAEAAKADYYVIIMIDDTmVPGQWYSQAILY 100
Cdd:pfam07338   1 LQPIGTVSVsGVFGSPSDAEAALSKKADAKGAKSYRIISADEP-NGGNWHGTAELY 55
LpoA COG3107
Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope ...
 4-51 1.25e-03

Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442341 [Multi-domain]  Cd Length: 610  Bit Score: 36.48  E-value: 1.25e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 488974783   4 RRFSPWLLAIVLSGCSALQGTPEAPPP--ATDHPQEIQRYqtagLQKMAT 51
Cdd:COG3107   13 RLLLLLLLALLLAGCASTSTAPQTPAAdlQGEATASAEYY----LQQAEQ 58
 
Name Accession Description Interval E-value
PRK14864 PRK14864
biofilm peroxide resistance protein BsmA;
1-102 8.28e-50

biofilm peroxide resistance protein BsmA;


Pssm-ID: 184866  Cd Length: 104  Bit Score: 152.89  E-value: 8.28e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974783   1 MVMRRFSPWLLAIVLSGCSALQGTPEAPPPATDHPQEIQRYQTAGLQKMATVSVLMYGSPMDVEAALKAKAEAAKADYYV 80
Cdd:PRK14864   3 MVMRRFASLLLTLLLSACSALQGTPQPAPPPADHAQEIRRAQTQGLQKMGTVSALVRGSPDDAEREIQAKANAAGADYYV 82

                         90       100
                 ....*....|....*....|..
gi 488974783  81 IIMIDDTMVPGQWYSQAILYRR 102
Cdd:PRK14864  83 IVMVDETVVPGQWYSQAILYRK 104
YdgH_BhsA-like pfam07338
YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around ...
 46-100 5.16e-07

YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around 90 residues in length, including E. coli YdgH, YhcN, BhsA and McbA, which play a role in stress response, biofilm formation and pathogenesis. BhsA (also known as ComC) reduces the permeability of the outer membrane to copper and may decrease biofilm formation by repressing cell-cell interaction and cell surface interaction. Members of this entry have one copy of this domain with the exception of YdgH, which has three copies. The function of this domain is unknown, however, it is suggested to be directly involved in host-pathogen interaction.


Pssm-ID: 429417 [Multi-domain]  Cd Length: 55  Bit Score: 42.89  E-value: 5.16e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 488974783   46 LQKMATVSV-LMYGSPMDVEAALKAKAEAAKADYYVIIMIDDTmVPGQWYSQAILY 100
Cdd:pfam07338   1 LQPIGTVSVsGVFGSPSDAEAALSKKADAKGAKSYRIISADEP-NGGNWHGTAELY 55
rcsF PRK10781
Rcs stress response system protein RcsF;
3-60 2.51e-04

Rcs stress response system protein RcsF;


Pssm-ID: 182725  Cd Length: 133  Bit Score: 37.36  E-value: 2.51e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 488974783   3 MRRFSPWLLAIVLSGCSALQGTPEAPPPATDHPQEIQRYQTAglqKMATVSVLMYGSP 60
Cdd:PRK10781   1 MRALPICLLALMLTGCSMLSRSPVEPVQSTAPPPKAEPAKPK---APRAAPVRLYTNA 55
LpoA COG3107
Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope ...
 4-51 1.25e-03

Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442341 [Multi-domain]  Cd Length: 610  Bit Score: 36.48  E-value: 1.25e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 488974783   4 RRFSPWLLAIVLSGCSALQGTPEAPPP--ATDHPQEIQRYqtagLQKMAT 51
Cdd:COG3107   13 RLLLLLLLALLLAGCASTSTAPQTPAAdlQGEATASAEYY----LQQAEQ 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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