|
Name |
Accession |
Description |
Interval |
E-value |
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
4-329 |
2.45e-164 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 461.32 E-value: 2.45e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 4 PKETSAPVAKSASAKKMLMGDLMQTVGILPILILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDL 83
Cdd:COG4158 5 PPAPAAPSAAPAAARRFRLRSLLQAVGMLPVLILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 84 SVGSILGTTAVAAMVVSLIPAFALLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSD 163
Cdd:COG4158 85 SVGSILAASAVVAVLVSLLPGLGLLGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFNPD 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 164 ISFEWIGNDYLGPVPWLVVIALAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMS 243
Cdd:COG4158 165 LPFAWIGNGYLLGIPWLVVIALAVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMS 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 244 ASRLYSANGN-LGVGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLID 322
Cdd:COG4158 245 AARLYAANGLqLGQGYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALD 324
|
....*..
gi 488974268 323 KYRTRHH 329
Cdd:COG4158 325 RYRQRGS 331
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
35-324 |
1.24e-76 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 237.69 E-value: 1.24e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 35 LILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILGTT-AVAAMVVSL-IPAfaLLSIPA 112
Cdd:PRK09512 25 LLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTgAVAASIVGIeVNA--LVAVPA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 113 ALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVI-----NSDiSFEWIGNDYLGPVPWLVVIALAV 187
Cdd:PRK09512 103 ALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINtgftdNAD-LFGWFGIGRPLGIPTPVWIMAIV 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 188 IAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYELDAIAAVI 267
Cdd:PRK09512 182 FLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVV 261
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 488974268 268 LGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKY 324
Cdd:PRK09512 262 LGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNK 318
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
62-322 |
4.59e-73 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 226.52 E-value: 4.59e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 62 ASINIVLAAGMTFIILTGGIDLSVGSILGTTAV-AAMVVSLIPAFALLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTL 140
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVvAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 141 GTYTALRGAAYLLADGTTVINSDISFEW-IGNDYLGPVPWLVVIALAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGI 219
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFfLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 220 KVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTL 299
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|...
gi 488974268 300 MGVSYFWQLVIKGAVIIIAVLID 322
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVALD 263
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
26-324 |
3.57e-53 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 178.81 E-value: 3.57e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 26 MQTVGILPILILIVAVFGFIAPN-FFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILG-TTAVAAMVVSLIP 103
Cdd:NF040906 2 LRQYGMLIALVAIVVLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAfVGAVAAVLMVNWG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 104 AFALLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSDISFEWIGNDYL--------- 174
Cdd:NF040906 82 MPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFLpdlfggtgl 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 175 ---------------------------------GPVPW----LVVIALAVIAVCW-----------------------FI 194
Cdd:NF040906 162 hlltlllgvlaaaalvwsqlrgrrrrikyglevEPMALfiakLVLIAAAILFFTYllasyrglpnvliilgvlilvysFV 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 195 LRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYELDAIAAVILGGTSFV 274
Cdd:NF040906 242 TNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASAS 321
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 488974268 275 GGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKY 324
Cdd:NF040906 322 GGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVY 371
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
54-319 |
2.08e-23 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 97.33 E-value: 2.08e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 54 NLLNITRQASINIVLAAGMTFII-LTGGIDLSVGSILGTTA-VAAMVVSLIPAFALLSIPAALMLGLLLGLFNGALVAFA 131
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAyVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 132 GLPPFIVTLGTYTALRGAAYLLADGTTVINSDIS-----FEWIGNDYLGPVPWLVVIALAVIAVCWFILRRTTLGVHIYA 206
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGILGGEGGTSgitgpSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 207 VGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSAN-GNLGVGYELDAIAAVILggtsfvGGIGTITGTLV 285
Cdd:pfam02653 161 VGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPpSNFGVGLGLDAIAAVVL------GGAGSPIGVVI 234
|
250 260 270
....*....|....*....|....*....|....*
gi 488974268 286 GALIIATLNNGMTLM-GVSYFWQLVIKGAVIIIAV 319
Cdd:pfam02653 235 GSLIIGLVQSLGLGAlGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
4-329 |
2.45e-164 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 461.32 E-value: 2.45e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 4 PKETSAPVAKSASAKKMLMGDLMQTVGILPILILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDL 83
Cdd:COG4158 5 PPAPAAPSAAPAAARRFRLRSLLQAVGMLPVLILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 84 SVGSILGTTAVAAMVVSLIPAFALLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSD 163
Cdd:COG4158 85 SVGSILAASAVVAVLVSLLPGLGLLGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFNPD 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 164 ISFEWIGNDYLGPVPWLVVIALAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMS 243
Cdd:COG4158 165 LPFAWIGNGYLLGIPWLVVIALAVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMS 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 244 ASRLYSANGN-LGVGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLID 322
Cdd:COG4158 245 AARLYAANGLqLGQGYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALD 324
|
....*..
gi 488974268 323 KYRTRHH 329
Cdd:COG4158 325 RYRQRGS 331
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
13-327 |
4.72e-96 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 287.39 E-value: 4.72e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 13 KSASAKKMLMGDLMQTVGILPILILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILG-T 91
Cdd:COG1172 3 ATTTTARSLLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVAlS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 92 TAVAAMVVSLIPAFALLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSDISFEWIGN 171
Cdd:COG1172 83 GVVAALLLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQ 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 172 DYLGPVPWLVVIALAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSAN 251
Cdd:COG1172 163 GSLLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQ 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488974268 252 GNLGVGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKYRTR 327
Cdd:COG1172 243 PNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRR 318
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
35-324 |
1.24e-76 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 237.69 E-value: 1.24e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 35 LILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILGTT-AVAAMVVSL-IPAfaLLSIPA 112
Cdd:PRK09512 25 LLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTgAVAASIVGIeVNA--LVAVPA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 113 ALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVI-----NSDiSFEWIGNDYLGPVPWLVVIALAV 187
Cdd:PRK09512 103 ALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINtgftdNAD-LFGWFGIGRPLGIPTPVWIMAIV 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 188 IAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYELDAIAAVI 267
Cdd:PRK09512 182 FLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVV 261
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 488974268 268 LGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKY 324
Cdd:PRK09512 262 LGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNK 318
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
6-324 |
7.32e-74 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 233.08 E-value: 7.32e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 6 ETSAPVAKSASAKKMLMGDlMQTVGILPILILIVAVFGFI-APNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLS 84
Cdd:COG4214 3 TTAAPGGAVRSLRRLLGGD-LRSLGMIIALVVIWIVFQILtGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 85 VGSILGTT-AVAA--MVVSLIPAFalLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVIN 161
Cdd:COG4214 82 VGSVSGFVgAVAAvlMVNWGLPWW--LAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 162 SDISFEWIGNDYLGP----------------------------------------------------------------V 177
Cdd:COG4214 160 FDPTFQAIGNGFLPDilgtlswvlgavavaayvalqlrsrrrrrryglpveplwlfvlklallavlilgavyllnsyrgI 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 178 PWLVVIALAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVG 257
Cdd:COG4214 240 PIVVLILLVLVVVYTFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTG 319
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488974268 258 YELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKY 324
Cdd:COG4214 320 FELDAIAAAVIGGTSLFGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDVL 386
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
62-322 |
4.59e-73 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 226.52 E-value: 4.59e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 62 ASINIVLAAGMTFIILTGGIDLSVGSILGTTAV-AAMVVSLIPAFALLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTL 140
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVvAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 141 GTYTALRGAAYLLADGTTVINSDISFEW-IGNDYLGPVPWLVVIALAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGI 219
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFfLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 220 KVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTL 299
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|...
gi 488974268 300 MGVSYFWQLVIKGAVIIIAVLID 322
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVALD 263
|
|
| MglC |
COG4211 |
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and ... |
30-322 |
8.08e-66 |
|
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443358 Cd Length: 336 Bit Score: 210.52 E-value: 8.08e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 30 GILPILILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILGTTAVAA--------MVVSL 101
Cdd:COG4211 17 AIYIVLLLLIIAIIIINPNFLSLRNIRNILTQSSTRMIIALGVAGLIVTQGTDLSAGRMVGLAAVISasllqsgdYAGKF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 102 IPAFALLSIPAALMLGLLLGLFNGAL----VAFAGLPPFIVTLGTYTALRGAAYLLADGTTV-----INSDISFEWIGND 172
Cdd:COG4211 97 FPNLPELPIIVPILIAIAIGALFGLIngffVAKLKVPPFIATLGTMLIVYGINSIYTDRPGAqpiggLDESFTNFAQGSI 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 173 YLGPV--PWLVVIALAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSA 250
Cdd:COG4211 177 NIGGFgiPYLIIYAIIVIVIMWFIWNKTKFGKNMYAVGGNPEAAEVSGVNVFKTLIIVYALAGALYGFAGFLEAARTGSA 256
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488974268 251 NGNLGVGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLID 322
Cdd:COG4211 257 TNNYGNGYELDAIAACVVGGVSFSGGIGKISGVVIGVLIFTVINYGLTFIGVNPYWQYIIKGLIIIAAVALD 328
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
30-322 |
4.86e-56 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 185.28 E-value: 4.86e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 30 GILPILILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILGTTAVAAM--------VVSL 101
Cdd:PRK09478 17 GIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAAtllqsmdnANKV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 102 IPAFALLSIPAALMLGLLLGLFNG----ALVAFAGLPPFIVTLGTYTALRGAAYLLAD---GTTVINSDISFEWIGNDYL 174
Cdd:PRK09478 97 FPELATMPIALVILIVCAIGAVIGlingLIIAYLNVTPFIATLGTMIIVYGINSLYYDfvgASPISGFDSGFSTFAQGFV 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 175 G----PVPWLVVIALAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSA 250
Cdd:PRK09478 177 AlgsfRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSA 256
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488974268 251 NGNLGVGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLID 322
Cdd:PRK09478 257 TNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALD 328
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
18-324 |
7.29e-56 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 184.21 E-value: 7.29e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 18 KKMLMGDLMQTVGILPILILIVAVFGFIAPN-FFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILGTTAVAA 96
Cdd:PRK09699 1 KPFNFALFWDKYGTFFILAIIVAIFGSLSPEyFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 97 ---MVVSLIPAFAllSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSDISF-EWIGND 172
Cdd:PRK09699 81 aklMLAGVDPFLA--ALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFvNFFAAS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 173 YLG-PVPwlVVIALAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSAN 251
Cdd:PRK09699 159 VIGiPVP--VIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAE 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488974268 252 GNLGVGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKY 324
Cdd:PRK09699 237 PLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRL 309
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
26-324 |
3.57e-53 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 178.81 E-value: 3.57e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 26 MQTVGILPILILIVAVFGFIAPN-FFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILG-TTAVAAMVVSLIP 103
Cdd:NF040906 2 LRQYGMLIALVAIVVLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAfVGAVAAVLMVNWG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 104 AFALLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSDISFEWIGNDYL--------- 174
Cdd:NF040906 82 MPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFLpdlfggtgl 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 175 ---------------------------------GPVPW----LVVIALAVIAVCW-----------------------FI 194
Cdd:NF040906 162 hlltlllgvlaaaalvwsqlrgrrrrikyglevEPMALfiakLVLIAAAILFFTYllasyrglpnvliilgvlilvysFV 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 195 LRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYELDAIAAVILGGTSFV 274
Cdd:NF040906 242 TNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASAS 321
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 488974268 275 GGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKY 324
Cdd:NF040906 322 GGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVY 371
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
1-327 |
1.37e-49 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 168.32 E-value: 1.37e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 1 MSIPKETSAPVAKSASAKKMLMGDLMQTVGILPILILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGG 80
Cdd:PRK11285 2 SSVSTSGSGAAAAAPPKSRFSLWRIWDQYGMLVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 81 IDLSVGSILGTTAVAAMVVSLIPAFALLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVI 160
Cdd:PRK11285 82 FDLSVASVVAFAGVVTAVVINATESLWLGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAVG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 161 NSDISFEWIGNDYLGPVPWLVVIALAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGG 240
Cdd:PRK11285 162 ISDERFFALGYANFFGVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAG 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 241 VMSASRLYSANGNLGVGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVL 320
Cdd:PRK11285 242 VILASRMTSGQPMTSIGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVL 321
|
....*..
gi 488974268 321 IDKYRTR 327
Cdd:PRK11285 322 FDRYKQR 328
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
32-328 |
3.36e-38 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 138.16 E-value: 3.36e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 32 LPILI---LIVAVFGFIA---PNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILG-TTAVAAMVVSLIPA 104
Cdd:PRK11618 6 LPLMItigVFVLGYLFCLvqfPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAfTGVFLAKLIGDYGW 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 105 FALLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVIN-------SDISFEWIGNdylGPV 177
Cdd:PRK11618 86 SPLLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEESIPINhpfydtlSSLAWKLPGG---GRL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 178 PWLVVIALAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVG 257
Cdd:PRK11618 163 SAMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVG 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488974268 258 YELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMG-VSYFWQLVIKGAVIIIAVLIDKYRTRH 328
Cdd:PRK11618 243 VELDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDGtLSSWWTKIVIGILLFVFIALQRGLTVL 314
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
32-327 |
1.73e-29 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 115.60 E-value: 1.73e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 32 LPILILIVAVF---GFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILGTTAVaAMVVSLIPAFAL- 107
Cdd:PRK15432 11 LTALLAIVLLFvllGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAV-LVGMLLNAGYSLp 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 108 LSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSDISFEWIGNDYL---GPVPWLVvia 184
Cdd:PRK15432 90 VACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPILlgiSPIGWLT--- 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 185 LAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYELDAIA 264
Cdd:PRK15432 167 LILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIA 246
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488974268 265 AVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGaVIIIAVLIDKYRTR 327
Cdd:PRK15432 247 ACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAG-LVLLGVLVFDGRLR 308
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
34-330 |
1.14e-25 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 104.91 E-value: 1.14e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 34 ILILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILGTTAVAAMVVSLIPAFALLSIPAA 113
Cdd:PRK15038 14 LLVIEILAFGLINPRMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMPLAILLT 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 114 LMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADgttvINSDISFEWIG----------NDYLGPVPWLVVI 183
Cdd:PRK15038 94 LLLGALCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLSG----MAGATGYEGIGgfpmaftdfaNLDVLGLPVPLII 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 184 ALAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYELDAI 263
Cdd:PRK15038 170 FLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAI 249
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488974268 264 AAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKYRTRHHQ 330
Cdd:PRK15038 250 TAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVVVGRSVSLHRHQ 316
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
54-319 |
2.08e-23 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 97.33 E-value: 2.08e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 54 NLLNITRQASINIVLAAGMTFII-LTGGIDLSVGSILGTTA-VAAMVVSLIPAFALLSIPAALMLGLLLGLFNGALVAFA 131
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAyVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 132 GLPPFIVTLGTYTALRGAAYLLADGTTVINSDIS-----FEWIGNDYLGPVPWLVVIALAVIAVCWFILRRTTLGVHIYA 206
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGILGGEGGTSgitgpSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 207 VGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSAN-GNLGVGYELDAIAAVILggtsfvGGIGTITGTLV 285
Cdd:pfam02653 161 VGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPpSNFGVGLGLDAIAAVVL------GGAGSPIGVVI 234
|
250 260 270
....*....|....*....|....*....|....*
gi 488974268 286 GALIIATLNNGMTLM-GVSYFWQLVIKGAVIIIAV 319
Cdd:pfam02653 235 GSLIIGLVQSLGLGAlGSPPELSLLVLGALLILVL 269
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
179-321 |
8.22e-16 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 76.25 E-value: 8.22e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 179 WLVVIALAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRlYSANGNLGVGY 258
Cdd:COG0559 142 FIIVVALVLLAALWLFLRRTRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPI-YSVSPTMGFLL 220
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488974268 259 ELDAIAAVILggtsfvGGIGTITGTLVGALIIATLNNGMTLMgVSYFWQLVIkGAVIIIAVLI 321
Cdd:COG0559 221 GLKAFAAVVL------GGLGSIPGAVVGGLLLGLAESLGAAY-LPSGYKDVV-AFVLLILVLL 275
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
63-319 |
2.03e-15 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 75.01 E-value: 2.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 63 SINIVLAAGMTFIILTGGI-DLSVGSILGTTAVAAMVVSLIPAFALLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLG 141
Cdd:cd06574 2 LIYAILALGVYIVFRILGFpDLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 142 TYTALR-------GAAYLLADGTTVINSDISFEWIGNDYLGPVPWLVVIALAVIAVCWFilRRTTLGVHIYAVGGNMQAA 214
Cdd:cd06574 82 IMIGLYsinlrimGGPNIPLGTRDTLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWF--LRTKLGLAMRATGDNPDMA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 215 RLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYELDAIAAVILGGTSF--VGGIGTITGTLVGALIIAT 292
Cdd:cd06574 160 RSLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVgrRTIKASILGVIIGAILYRI 239
|
250 260
....*....|....*....|....*..
gi 488974268 293 LNNGMTLMGVSYFWQLVIKGAVIIIAV 319
Cdd:cd06574 240 ALALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
131-321 |
2.92e-13 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 68.61 E-value: 2.92e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 131 AGLPPFIVTLGTYTALRGAAYLLADGTTVINSDISFEW---IGNDYLGPVP-WLVVIALAVIAVCWFILRRTTLGVHIYA 206
Cdd:cd06582 80 APLLTLLITFGGLLILLQGLLLIFGGDPRVPPPPLLSGsveLGGVTIPPYRlFIIAVALVLLAALYLFLRRTRLGRAIRA 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 207 VGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASrLYSANGNLGVGYELDAIAAVILggtsfvGGIGTITGTLVG 286
Cdd:cd06582 160 VAQNPEAARLLGINVRRVFALTFALGAALAGLAGVLLAP-ITGVSPTMGLLLLLKAFAAVVL------GGLGSIPGAVVG 232
|
170 180 190
....*....|....*....|....*....|....*
gi 488974268 287 ALIIATLNNGMTLMGVSYFWQLVIkgAVIIIAVLI 321
Cdd:cd06582 233 GLLLGLAESLAAAYLSSGYKDAVA--FVLLILVLL 265
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
176-321 |
7.43e-13 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 68.61 E-value: 7.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 176 PVPWLVVIALAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMS-ASRLYSANGNL 254
Cdd:COG4603 195 RLHLGLLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVEvLGVQGRLTPGF 274
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488974268 255 GVGYELDAIAAVILGGTSFVggigtitGTLVGALIIATLNNGMTLMGVSYfwQLVIKGAVIIIAVLI 321
Cdd:COG4603 275 SPGYGFTGIAVALLGRNNPL-------GIILAALLFGALYVGGDAMQRAL--GVPSEIVDVIQGLII 332
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
179-321 |
2.77e-12 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 65.54 E-value: 2.77e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 179 WLVVIALAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGG-VMSASRLYSANGNLGVG 257
Cdd:cd06580 96 YLLLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGaYLVLGVQGRFTEGMSAG 175
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488974268 258 YELDAIAAVILGGTSFVggigtitGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLI 321
Cdd:cd06580 176 YGFIAIAVALLGRWNPL-------GILLAALLFGALEAGGIALQRSGGVPSELVQVLPGIIVLF 232
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
137-320 |
4.59e-11 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 62.41 E-value: 4.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 137 IVTLGTYTALRGAAYLLAD---GTTVINSDISFEWIGNDYLGPVPWLVVIALAVIAVCWFI--LRRTTLGVHIYAVGGNM 211
Cdd:COG4177 89 IATLAFAEIVRLLALNLESltgGADGLSGIPRPTLFGLDLGSPLAFYYLVLALLVLVLLLLrrLVRSRFGRALRAIRENE 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 212 QAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSAN-GNLGVGYELDAIAAVILggtsfvGGIGTITGTLVGALII 290
Cdd:COG4177 169 IAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSpESFSFLLSIEILLMVVL------GGLGSLLGPVLGAVLL 242
|
170 180 190
....*....|....*....|....*....|
gi 488974268 291 ATLNNGMTLMGvsyFWQLVIKGAVIIIAVL 320
Cdd:COG4177 243 VLLPELLRSLP---EYRLLIFGLLLILVVL 269
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
154-320 |
3.47e-10 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 59.76 E-value: 3.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 154 ADGTTVINSDISFEWIGNDYLGPVPWLVVIALAVIAVCWFiLRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSG 233
Cdd:cd06581 102 SNGLSGIPPPLLGGLLLSSPLAFYYLVLAVLLLVLLLLRR-LVRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSA 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974268 234 LLSGLGGVMSASRLYSAN-GNLGVGYELDAIAAVIlggtsfVGGIGTITGTLVGALIIATLNNGmtLMGVSYFWQLVIKG 312
Cdd:cd06581 181 ALAGLAGALYAHYLGFVSpESFGFALSIELLLMVV------LGGLGSLLGPVLGAALLVLLPEL--LRSLGPGLRLLVFG 252
|
....*...
gi 488974268 313 AVIIIAVL 320
Cdd:cd06581 253 LLLILVVL 260
|
|
| |
