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Conserved domains on  [gi|488974127|ref|WP_002885032|]
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MULTISPECIES: outer membrane protein assembly factor BamA [Klebsiella]

Protein Classification

outer membrane protein assembly factor BamA( domain architecture ID 11485180)

outer membrane protein assembly factor BamA is part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane

Gene Symbol:  bamA
Gene Ontology:  GO:0071709|GO:0009279|GO:0051205

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
PRK11067 PRK11067
outer membrane protein assembly factor YaeT; Provisional
1-807 0e+00

outer membrane protein assembly factor YaeT; Provisional


:

Pssm-ID: 236834 [Multi-domain]  Cd Length: 803  Bit Score: 1516.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127   1 MLKKTHIISGLLIAPLTLYAATSYQVDDIRFEGLQRVTVGAALLSMPLHAGDAVTPEDVSEAVRALYASGNFENVQILRD 80
Cdd:PRK11067   1 MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  81 GKTLVVQVKERPTIASVSFSGNKVVKDDALKENLTASGISAGSALDRNSLSEIEKGLQDFYYSAGKYSAQVHAVVTPLPR 160
Cdd:PRK11067  81 GNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLPR 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 161 NRVDLTFVFQEGISAKIAQINIIGNQAFREETLLDQLQLRDNVPWWNVVADKKYQKQKLEADLETLRSFYLDRGYARFAI 240
Cdd:PRK11067 161 NRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 241 ESTQVSMTPDKKSLYITIALNEGERYRVDRTQVTGDLAQHGPEIEALAQPLAGAWYSGAQVTTVENEIKKHFGKYGYAWP 320
Cdd:PRK11067 241 DSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 321 QVTSTPEIDDAHHRVVLHIQVNAGRRYSVRQIRFSGNDTSRDAVLRREMRQMEGAWLNNEKVDQGKVRLDRTGFFENVEQ 400
Cdd:PRK11067 321 RVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDV 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 401 QIVPVNGTADQVDVVYKVKERNTGSFNVGLGFGTDSGVSYQLGVTQDNWLGTGNSVSFNGTRNSYQSYLELGATNPWFTV 480
Cdd:PRK11067 401 DTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTV 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 481 DGISLGGKIFYNSYDASDADAGSYNQQSYGLGSTLGFPISENNSLNLGLDYVHNRLTNMDPELTTWRYLSSRGIEPsvvt 560
Cdd:PRK11067 481 DGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGENP---- 556
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 561 kDGDSGAKYSANDYFVSLGWGYNDLDRGFFPRAGNKSSLSGKVTLPGSDNSYYKLSFDTAQYLPLSENKRWVWMERLRAG 640
Cdd:PRK11067 557 -SSDSDNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLG 635
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 641 YAGGLDGKSVPFYDNFYAGGSSSVRGFSSNTIGPKAAYYRCNGSE-SSYSACPLDASSDAVGGNAMAVLNSEFIIPTPFV 719
Cdd:PRK11067 636 YGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYYPGQASNyTQDGAKDLCKSDDAVGGNAMAVASLELITPTPFI 715
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 720 NDKYADSLRTSLFVDAGTVWSTSWHNTAQTLAAGIPDYGDPSHIRLSAGIAVQWMSPLGPLVFSWAEPFKKYDGDKAEQF 799
Cdd:PRK11067 716 SDKYANSVRTSFFWDMGTVWDTNWDNTAYTRAAGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQF 795

                 ....*...
gi 488974127 800 QFNIGKTW 807
Cdd:PRK11067 796 QFNIGKTW 803
 
Name Accession Description Interval E-value
PRK11067 PRK11067
outer membrane protein assembly factor YaeT; Provisional
1-807 0e+00

outer membrane protein assembly factor YaeT; Provisional


Pssm-ID: 236834 [Multi-domain]  Cd Length: 803  Bit Score: 1516.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127   1 MLKKTHIISGLLIAPLTLYAATSYQVDDIRFEGLQRVTVGAALLSMPLHAGDAVTPEDVSEAVRALYASGNFENVQILRD 80
Cdd:PRK11067   1 MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  81 GKTLVVQVKERPTIASVSFSGNKVVKDDALKENLTASGISAGSALDRNSLSEIEKGLQDFYYSAGKYSAQVHAVVTPLPR 160
Cdd:PRK11067  81 GNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLPR 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 161 NRVDLTFVFQEGISAKIAQINIIGNQAFREETLLDQLQLRDNVPWWNVVADKKYQKQKLEADLETLRSFYLDRGYARFAI 240
Cdd:PRK11067 161 NRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 241 ESTQVSMTPDKKSLYITIALNEGERYRVDRTQVTGDLAQHGPEIEALAQPLAGAWYSGAQVTTVENEIKKHFGKYGYAWP 320
Cdd:PRK11067 241 DSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 321 QVTSTPEIDDAHHRVVLHIQVNAGRRYSVRQIRFSGNDTSRDAVLRREMRQMEGAWLNNEKVDQGKVRLDRTGFFENVEQ 400
Cdd:PRK11067 321 RVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDV 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 401 QIVPVNGTADQVDVVYKVKERNTGSFNVGLGFGTDSGVSYQLGVTQDNWLGTGNSVSFNGTRNSYQSYLELGATNPWFTV 480
Cdd:PRK11067 401 DTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTV 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 481 DGISLGGKIFYNSYDASDADAGSYNQQSYGLGSTLGFPISENNSLNLGLDYVHNRLTNMDPELTTWRYLSSRGIEPsvvt 560
Cdd:PRK11067 481 DGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGENP---- 556
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 561 kDGDSGAKYSANDYFVSLGWGYNDLDRGFFPRAGNKSSLSGKVTLPGSDNSYYKLSFDTAQYLPLSENKRWVWMERLRAG 640
Cdd:PRK11067 557 -SSDSDNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLG 635
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 641 YAGGLDGKSVPFYDNFYAGGSSSVRGFSSNTIGPKAAYYRCNGSE-SSYSACPLDASSDAVGGNAMAVLNSEFIIPTPFV 719
Cdd:PRK11067 636 YGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYYPGQASNyTQDGAKDLCKSDDAVGGNAMAVASLELITPTPFI 715
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 720 NDKYADSLRTSLFVDAGTVWSTSWHNTAQTLAAGIPDYGDPSHIRLSAGIAVQWMSPLGPLVFSWAEPFKKYDGDKAEQF 799
Cdd:PRK11067 716 SDKYANSVRTSFFWDMGTVWDTNWDNTAYTRAAGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQF 795

                 ....*...
gi 488974127 800 QFNIGKTW 807
Cdd:PRK11067 796 QFNIGKTW 803
OM_YaeT TIGR03303
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ...
24-807 0e+00

outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274514 [Multi-domain]  Cd Length: 741  Bit Score: 909.27  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127   24 YQVDDIRFEGLQRVTVGAALLSMPLHAGDAVTPEDVSEAVRALYASGNFENVQILRDGKTLVVQVKERPTIASVSFSGNK 103
Cdd:TIGR03303   1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  104 VVKDDALKENLtaSGISAGSALDRNSLSEIEKGLQDFYYSAGKYSAQVHAVVTPLPRNRVDLTFVFQEGISAKIAQINII 183
Cdd:TIGR03303  81 EIKKDQLKKAL--VGIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  184 GNQAFREETLLDQLQLRDNVPWWNVVADKKYQKQKLEADLETLRSFYLDRGYARFAIESTQVSMTPDKKSLYITIALNEG 263
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  264 ERYRVDRTQVTGDLAQHGPEIEALAQPLAGAWYSGAQVTTVENEIKKHFGKYGYAWPQVTSTPEIDDAHHRVVLHIQVNA 343
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDP 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  344 GRRYSVRQIRFSGNDTSRDAVLRREMRQMEGAWLNNEKVDQGKVRLDRTGFFENVEQQIVPVNgTADQVDVVYKVKERNT 423
Cdd:TIGR03303 319 GKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPVG-SPDQVDLNVKVKEQPT 397
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  424 GSFNVGLGFGTDSGVSYQLGVTQDNWLGTGNSVSFNGTRNSYQSYLELGATNPWFTVDGISLGGKIFYNSYDASDADAGS 503
Cdd:TIGR03303 398 GSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFSD 477
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  504 YNQQSYGLGSTLGFPISENNSLNLGLDYVHNRLTNmdpelttwrylsSRGIEPSVVTKDGDSGAKYsaNDYFVSLGWGYN 583
Cdd:TIGR03303 478 YKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKD------------DSDSDSSASYFIKEQGGKF--IDSSLSYGWSYD 543
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  584 DLDRGFFPRAGNKSSLSGKVTLPGSDNSYYKLSFDTAQYLPLSENKRWVWMERLRAGYAGGLDGKSVPFYDNFYAGGSSS 663
Cdd:TIGR03303 544 TLDSGYFPTKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVLSLRGRLGYGNGYGGKDLPFYERFYAGGIGS 623
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  664 VRGFSSNTIGPKAAYYrcngsessysacpldaSSDAVGGNAMAVLNSEFIIPTPFVndKYADSLRTSLFVDAGTVWSTSW 743
Cdd:TIGR03303 624 VRGFESNGIGPRDIND----------------SGDSIGGNAMATANVELIFPLPFL--PEDNGLRGSVFFDAGNVWGTDQ 685
                         730       740       750       760       770       780
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488974127  744 HNTaqtlaagiPDYGDPSHIRLSAGIAVQWMSPLGPLVFSWAEPFKKYDGDKAEQFQFNIGKTW 807
Cdd:TIGR03303 686 KKE--------GDYSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
BamA COG4775
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
26-807 0e+00

Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443807 [Multi-domain]  Cd Length: 711  Bit Score: 722.26  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  26 VDDIRFEGLQRVTVGAALLSMPLHAGDAVTPEDVSEAVRALYASGNFENVQILRDGKTLVVQVKERPTIASVSFSGNKVV 105
Cdd:COG4775    1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 106 KDDALKENLtasGISAGSALDRNSLSEIEKGLQDFYYSAGKYSAQVHavVTPlPRNRVDLTFVFQEGISAKIAQINIIGN 185
Cdd:COG4775   81 KDEDLKKEL---GLKEGRVFDRALLERAEQELKEQYRSKGYYNAKVT--ITP-ERNRVDLTFEIDEGEKAKIKKINFVGN 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 186 QAFREETLLDQLQLRDNVPWWNvvaDKKYQKQKLEADLETLRSFYLDRGYARFAIESTQVSMTPDKKSLYITIALNEGER 265
Cdd:COG4775  155 KAFSDKELRKVLKTKESGWLTK---SDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQ 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 266 YRVDRTQVTGDLAqHGPEIEALAQPLAGAWYSGAQVTTVENEIKKHFGKYGYAWPQVTSTPEIDDAHHRVVLHIQVNAGR 345
Cdd:COG4775  232 YKVGDIKFEGNLV-DEEELRKLLKIKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGP 310
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 346 RYSVRQIRFSGNDTSRDAVLRREMRQMEGAWLNNEKVDQGKVRLDRTGFFENVEQQIVPVNGTADQVDVVYKVKERNTGS 425
Cdd:COG4775  311 RVYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTGS 390
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 426 FNVGLGFGTDSGVSYQLGVTQDNWLGTGNSVSFNGTRNSYQSYLELGATNPWFTVDGISLGGKIFYNSYDASDADagSYN 505
Cdd:COG4775  391 LSLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDASDYS--SYD 468
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 506 QQSYGLGSTLGFPISENNSLNLGLDYVHNRLTNMDPelTTWRYLSSRGiepsvvtkdgdsgakySANDYFVSLGWGYNDL 585
Cdd:COG4775  469 LKRTGGGLGLGYPLSEDLRLSLGYGYERTDISDVDS--SPDYLPDQNG----------------SSNTSSLGLGLTYDTR 530
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 586 DRGFFPRAGNKSSLSGKVTLP--GSDNSYYKLSFDTAQYLPLSenKRWVWMERLRAGYAGGLdGKSVPFYDNFYAGGSSS 663
Cdd:COG4775  531 DNPLFPTRGSYLSLSLEFAGPylGGDLEYYKLSADARYYFPLG--KKLVLALRAEAGYLGGY-GKDLPFFERFYLGGFGS 607
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 664 VRGFSSNTIGPKaayyrcngsessysacpldassdaVGGNAMAVLNSEFIIPTPFVNDKyadSLRTSLFVDAGTVWSTsw 743
Cdd:COG4775  608 LRGYEENSLGPR------------------------LGGNAYLLGSAELRFPLPLPPSA---GLRGALFVDAGNVWDS-- 658
                        730       740       750       760       770       780
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488974127 744 hntaqtlaagiPDYGDPSHIRLSAGIAVQWMSPLGPLVFSWAEPFKKYDGDKAEQFQFNIGKTW 807
Cdd:COG4775  659 -----------GDDFDLSDLRYSAGVGLRWDTPLGPLRLDYAYPLDKEPGDSGQRFHFSIGTRF 711
Omp85 pfam01103
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ...
448-803 8.08e-99

Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.


Pssm-ID: 460065 [Multi-domain]  Cd Length: 319  Bit Score: 309.29  E-value: 8.08e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  448 NWLGTGNSVSFNGTRNSYQSYLELGATNPWFTVDGISLGGKIFYNSYDASDADAGSYNQQSYGLGSTLGFPISENNSLNL 527
Cdd:pfam01103   1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDRDSSDSYRITTYGFSVSLGRPITENWSLSL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  528 GLDYVHNRLTNMDPELTTWRYLSSrgiepsvvtkdgdSGAKYSANDYFVSLGWGYNDLDRGFFPRAGNKSSLSGKVTL-- 605
Cdd:pfam01103  81 GLGYQHNKILDESGSPNIRNYYPS-------------ASGTGKSLTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGpf 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  606 PGSDNSYYKLSFDTAQYLPLSENKRWVWMERLRAGYAGGLDGKSVPFYDNFYAGGSSSVRGFSSNTIGPKaayyrcngse 685
Cdd:pfam01103 148 LGGDVSYYKLTADGSYYYPLGKDDSFVLSARVALGYLDGYGTKDLPFYERFYAGGSNSVRGFEYGGIGPR---------- 217
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  686 ssysacplDASSDAVGGNAMAVLNSEFIIPTPFVNDkyaDSLRTSLFVDAGTVWSTSWHNTAQTLaagipDYGDPSHIRL 765
Cdd:pfam01103 218 --------DEDGDALGGNSYVVASLELRFPLPFVPK---QSVRGVLFFDAGNVWNTGSTDPGSSR-----GARSKAGIRA 281
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 488974127  766 SAGIAVQWMSPLGPLVFSWAEPFKKYDGDKAEQFQFNI 803
Cdd:pfam01103 282 SVGVGLRWLSPLGPLRFDYAFPLKKPDGDETQRFQFGI 319
 
Name Accession Description Interval E-value
PRK11067 PRK11067
outer membrane protein assembly factor YaeT; Provisional
1-807 0e+00

outer membrane protein assembly factor YaeT; Provisional


Pssm-ID: 236834 [Multi-domain]  Cd Length: 803  Bit Score: 1516.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127   1 MLKKTHIISGLLIAPLTLYAATSYQVDDIRFEGLQRVTVGAALLSMPLHAGDAVTPEDVSEAVRALYASGNFENVQILRD 80
Cdd:PRK11067   1 MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  81 GKTLVVQVKERPTIASVSFSGNKVVKDDALKENLTASGISAGSALDRNSLSEIEKGLQDFYYSAGKYSAQVHAVVTPLPR 160
Cdd:PRK11067  81 GNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLPR 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 161 NRVDLTFVFQEGISAKIAQINIIGNQAFREETLLDQLQLRDNVPWWNVVADKKYQKQKLEADLETLRSFYLDRGYARFAI 240
Cdd:PRK11067 161 NRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 241 ESTQVSMTPDKKSLYITIALNEGERYRVDRTQVTGDLAQHGPEIEALAQPLAGAWYSGAQVTTVENEIKKHFGKYGYAWP 320
Cdd:PRK11067 241 DSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 321 QVTSTPEIDDAHHRVVLHIQVNAGRRYSVRQIRFSGNDTSRDAVLRREMRQMEGAWLNNEKVDQGKVRLDRTGFFENVEQ 400
Cdd:PRK11067 321 RVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDV 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 401 QIVPVNGTADQVDVVYKVKERNTGSFNVGLGFGTDSGVSYQLGVTQDNWLGTGNSVSFNGTRNSYQSYLELGATNPWFTV 480
Cdd:PRK11067 401 DTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTV 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 481 DGISLGGKIFYNSYDASDADAGSYNQQSYGLGSTLGFPISENNSLNLGLDYVHNRLTNMDPELTTWRYLSSRGIEPsvvt 560
Cdd:PRK11067 481 DGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGENP---- 556
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 561 kDGDSGAKYSANDYFVSLGWGYNDLDRGFFPRAGNKSSLSGKVTLPGSDNSYYKLSFDTAQYLPLSENKRWVWMERLRAG 640
Cdd:PRK11067 557 -SSDSDNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLG 635
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 641 YAGGLDGKSVPFYDNFYAGGSSSVRGFSSNTIGPKAAYYRCNGSE-SSYSACPLDASSDAVGGNAMAVLNSEFIIPTPFV 719
Cdd:PRK11067 636 YGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYYPGQASNyTQDGAKDLCKSDDAVGGNAMAVASLELITPTPFI 715
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 720 NDKYADSLRTSLFVDAGTVWSTSWHNTAQTLAAGIPDYGDPSHIRLSAGIAVQWMSPLGPLVFSWAEPFKKYDGDKAEQF 799
Cdd:PRK11067 716 SDKYANSVRTSFFWDMGTVWDTNWDNTAYTRAAGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQF 795

                 ....*...
gi 488974127 800 QFNIGKTW 807
Cdd:PRK11067 796 QFNIGKTW 803
OM_YaeT TIGR03303
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ...
24-807 0e+00

outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274514 [Multi-domain]  Cd Length: 741  Bit Score: 909.27  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127   24 YQVDDIRFEGLQRVTVGAALLSMPLHAGDAVTPEDVSEAVRALYASGNFENVQILRDGKTLVVQVKERPTIASVSFSGNK 103
Cdd:TIGR03303   1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  104 VVKDDALKENLtaSGISAGSALDRNSLSEIEKGLQDFYYSAGKYSAQVHAVVTPLPRNRVDLTFVFQEGISAKIAQINII 183
Cdd:TIGR03303  81 EIKKDQLKKAL--VGIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  184 GNQAFREETLLDQLQLRDNVPWWNVVADKKYQKQKLEADLETLRSFYLDRGYARFAIESTQVSMTPDKKSLYITIALNEG 263
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  264 ERYRVDRTQVTGDLAQHGPEIEALAQPLAGAWYSGAQVTTVENEIKKHFGKYGYAWPQVTSTPEIDDAHHRVVLHIQVNA 343
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDP 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  344 GRRYSVRQIRFSGNDTSRDAVLRREMRQMEGAWLNNEKVDQGKVRLDRTGFFENVEQQIVPVNgTADQVDVVYKVKERNT 423
Cdd:TIGR03303 319 GKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPVG-SPDQVDLNVKVKEQPT 397
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  424 GSFNVGLGFGTDSGVSYQLGVTQDNWLGTGNSVSFNGTRNSYQSYLELGATNPWFTVDGISLGGKIFYNSYDASDADAGS 503
Cdd:TIGR03303 398 GSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFSD 477
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  504 YNQQSYGLGSTLGFPISENNSLNLGLDYVHNRLTNmdpelttwrylsSRGIEPSVVTKDGDSGAKYsaNDYFVSLGWGYN 583
Cdd:TIGR03303 478 YKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKD------------DSDSDSSASYFIKEQGGKF--IDSSLSYGWSYD 543
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  584 DLDRGFFPRAGNKSSLSGKVTLPGSDNSYYKLSFDTAQYLPLSENKRWVWMERLRAGYAGGLDGKSVPFYDNFYAGGSSS 663
Cdd:TIGR03303 544 TLDSGYFPTKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVLSLRGRLGYGNGYGGKDLPFYERFYAGGIGS 623
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  664 VRGFSSNTIGPKAAYYrcngsessysacpldaSSDAVGGNAMAVLNSEFIIPTPFVndKYADSLRTSLFVDAGTVWSTSW 743
Cdd:TIGR03303 624 VRGFESNGIGPRDIND----------------SGDSIGGNAMATANVELIFPLPFL--PEDNGLRGSVFFDAGNVWGTDQ 685
                         730       740       750       760       770       780
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488974127  744 HNTaqtlaagiPDYGDPSHIRLSAGIAVQWMSPLGPLVFSWAEPFKKYDGDKAEQFQFNIGKTW 807
Cdd:TIGR03303 686 KKE--------GDYSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
BamA COG4775
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
26-807 0e+00

Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443807 [Multi-domain]  Cd Length: 711  Bit Score: 722.26  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  26 VDDIRFEGLQRVTVGAALLSMPLHAGDAVTPEDVSEAVRALYASGNFENVQILRDGKTLVVQVKERPTIASVSFSGNKVV 105
Cdd:COG4775    1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 106 KDDALKENLtasGISAGSALDRNSLSEIEKGLQDFYYSAGKYSAQVHavVTPlPRNRVDLTFVFQEGISAKIAQINIIGN 185
Cdd:COG4775   81 KDEDLKKEL---GLKEGRVFDRALLERAEQELKEQYRSKGYYNAKVT--ITP-ERNRVDLTFEIDEGEKAKIKKINFVGN 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 186 QAFREETLLDQLQLRDNVPWWNvvaDKKYQKQKLEADLETLRSFYLDRGYARFAIESTQVSMTPDKKSLYITIALNEGER 265
Cdd:COG4775  155 KAFSDKELRKVLKTKESGWLTK---SDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQ 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 266 YRVDRTQVTGDLAqHGPEIEALAQPLAGAWYSGAQVTTVENEIKKHFGKYGYAWPQVTSTPEIDDAHHRVVLHIQVNAGR 345
Cdd:COG4775  232 YKVGDIKFEGNLV-DEEELRKLLKIKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGP 310
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 346 RYSVRQIRFSGNDTSRDAVLRREMRQMEGAWLNNEKVDQGKVRLDRTGFFENVEQQIVPVNGTADQVDVVYKVKERNTGS 425
Cdd:COG4775  311 RVYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTGS 390
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 426 FNVGLGFGTDSGVSYQLGVTQDNWLGTGNSVSFNGTRNSYQSYLELGATNPWFTVDGISLGGKIFYNSYDASDADagSYN 505
Cdd:COG4775  391 LSLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDASDYS--SYD 468
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 506 QQSYGLGSTLGFPISENNSLNLGLDYVHNRLTNMDPelTTWRYLSSRGiepsvvtkdgdsgakySANDYFVSLGWGYNDL 585
Cdd:COG4775  469 LKRTGGGLGLGYPLSEDLRLSLGYGYERTDISDVDS--SPDYLPDQNG----------------SSNTSSLGLGLTYDTR 530
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 586 DRGFFPRAGNKSSLSGKVTLP--GSDNSYYKLSFDTAQYLPLSenKRWVWMERLRAGYAGGLdGKSVPFYDNFYAGGSSS 663
Cdd:COG4775  531 DNPLFPTRGSYLSLSLEFAGPylGGDLEYYKLSADARYYFPLG--KKLVLALRAEAGYLGGY-GKDLPFFERFYLGGFGS 607
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 664 VRGFSSNTIGPKaayyrcngsessysacpldassdaVGGNAMAVLNSEFIIPTPFVNDKyadSLRTSLFVDAGTVWSTsw 743
Cdd:COG4775  608 LRGYEENSLGPR------------------------LGGNAYLLGSAELRFPLPLPPSA---GLRGALFVDAGNVWDS-- 658
                        730       740       750       760       770       780
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488974127 744 hntaqtlaagiPDYGDPSHIRLSAGIAVQWMSPLGPLVFSWAEPFKKYDGDKAEQFQFNIGKTW 807
Cdd:COG4775  659 -----------GDDFDLSDLRYSAGVGLRWDTPLGPLRLDYAYPLDKEPGDSGQRFHFSIGTRF 711
Omp85 pfam01103
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ...
448-803 8.08e-99

Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.


Pssm-ID: 460065 [Multi-domain]  Cd Length: 319  Bit Score: 309.29  E-value: 8.08e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  448 NWLGTGNSVSFNGTRNSYQSYLELGATNPWFTVDGISLGGKIFYNSYDASDADAGSYNQQSYGLGSTLGFPISENNSLNL 527
Cdd:pfam01103   1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDRDSSDSYRITTYGFSVSLGRPITENWSLSL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  528 GLDYVHNRLTNMDPELTTWRYLSSrgiepsvvtkdgdSGAKYSANDYFVSLGWGYNDLDRGFFPRAGNKSSLSGKVTL-- 605
Cdd:pfam01103  81 GLGYQHNKILDESGSPNIRNYYPS-------------ASGTGKSLTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGpf 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  606 PGSDNSYYKLSFDTAQYLPLSENKRWVWMERLRAGYAGGLDGKSVPFYDNFYAGGSSSVRGFSSNTIGPKaayyrcngse 685
Cdd:pfam01103 148 LGGDVSYYKLTADGSYYYPLGKDDSFVLSARVALGYLDGYGTKDLPFYERFYAGGSNSVRGFEYGGIGPR---------- 217
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  686 ssysacplDASSDAVGGNAMAVLNSEFIIPTPFVNDkyaDSLRTSLFVDAGTVWSTSWHNTAQTLaagipDYGDPSHIRL 765
Cdd:pfam01103 218 --------DEDGDALGGNSYVVASLELRFPLPFVPK---QSVRGVLFFDAGNVWNTGSTDPGSSR-----GARSKAGIRA 281
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 488974127  766 SAGIAVQWMSPLGPLVFSWAEPFKKYDGDKAEQFQFNI 803
Cdd:pfam01103 282 SVGVGLRWLSPLGPLRFDYAFPLKKPDGDETQRFQFGI 319
TamA COG0729
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; ...
256-804 9.51e-51

Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440493 [Multi-domain]  Cd Length: 574  Bit Score: 187.41  E-value: 9.51e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 256 ITIALNEGERYRVDRTQV--TGDLAQHgPEIEALAQPLA---GAWYSGAQVTTVENEIKKHFGKYGYAWPQVTST-PEID 329
Cdd:COG0729   91 VTITVDPGPPVRIGKVDIelLGEAAQD-PARRKLLAAWPlkpGDPLRHGAYEAAKSALLDALRERGYPDARFTQSrAEVD 169
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 330 DAHHRVVLHIQVNAGRRYSVRQIRFSGNDTSRDAVLRREMRQMEGAWLNNEKVDQGKVRLDRTGFFENVEQQIVPVNGTA 409
Cdd:COG0729  170 PATNTADVTLTVDSGPRYRFGEITVEGLSRVPEDFLRRLAPFKPGEPYSPDKLLELQQRLQSTGYFSSVRVTPDEDPAPD 249
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 410 DQVDVVYKVKERNTGSFNVGLGFGTDSGVSYQLGVTQDNWLGTGNSVSFNGTRNSYQSYLELGATNPWFTVDGISLggkI 489
Cdd:COG0729  250 GTVPVTVTLTERKRRRIGFGLGYSTDTGPRLSAGWEHRNLFGRGHRLRLELELSQPEQSLSADYRIPPLFPLGQYL---S 326
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 490 FYNSYDASDADAgsYNQQSYGLGSTLGFPISENNSLNLGLDYVHNRLTnmdpelttwrylssrgiepsvvtkDGDSGAKY 569
Cdd:COG0729  327 LGAGLEREDTDD--YDSRSLTLGAGRTRRLSDGWTRSLGLRLLYERFT------------------------DGDDDRTY 380
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 570 SAndYFVSLGWGYNDLDRGFFPRAGNKSSLSGKVTLP--GSDNSYYKLSFDTAQYLPLSENKRWVWmeRLRAGYAGGLDG 647
Cdd:COG0729  381 TL--LSPGLSWTRDRRDDPLDPTRGYRLSLELGPGSKllGSDTSFLRLYARGSWYRPLGERHRLAG--RAELGAILGADF 456
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127 648 KSVPFYDNFYAGGSSSVRGFSSNTIGPKaayyrcngsessysacplDASSDAVGGNAMAVLNSEFIIPTpfvndkyADSL 727
Cdd:COG0729  457 DDVPPSLRFFAGGDGSVRGYGYQSLGPR------------------DGDGDVIGGRSLAVGSLEYRYRV-------TENW 511
                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488974127 728 RTSLFVDAGTVWSTswhntaqtlaagIPDygdpSHIRLSAGIAVQWMSPLGPLVFSWAEPFKKYDGDKAeQFQFNIG 804
Cdd:COG0729  512 GLAVFVDAGNAFND------------FPF----SDLKVGAGLGLRWYSPVGPIRLDLAYPLNDRDDSSF-RLYISLG 571
POTRA pfam07244
Surface antigen variable number repeat; This family is found primarily in bacterial surface ...
176-263 2.01e-15

Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.


Pssm-ID: 462121 [Multi-domain]  Cd Length: 78  Bit Score: 71.60  E-value: 2.01e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  176 KIAQINIIGNQAFREETLLDQLQLRDNvpwwnvvadKKYQKQKLEADLETLRSFYLDRGYARFAIeSTQVSMTPDKKSLY 255
Cdd:pfam07244   1 KIGDINFEGNKKTKDEELRRLLGLKEG---------DVYNREKLEEDKEALKDRYGRLGYFDASV-STNVEIDDEVNTVD 70

                  ....*...
gi 488974127  256 ITIALNEG 263
Cdd:pfam07244  71 LTFNVDEG 78
POTRA pfam07244
Surface antigen variable number repeat; This family is found primarily in bacterial surface ...
93-172 3.24e-13

Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.


Pssm-ID: 462121 [Multi-domain]  Cd Length: 78  Bit Score: 65.44  E-value: 3.24e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127   93 TIASVSFSGNKVVKDDALKENLtasGISAGSALDRNSLSEIEKGLQDFYYSAGKYSAQVHAVVT-PLPRNRVDLTFVFQE 171
Cdd:pfam07244   1 KIGDINFEGNKKTKDEELRRLL---GLKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVEiDDEVNTVDLTFNVDE 77

                  .
gi 488974127  172 G 172
Cdd:pfam07244  78 G 78
POTRA pfam07244
Surface antigen variable number repeat; This family is found primarily in bacterial surface ...
349-421 2.19e-12

Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.


Pssm-ID: 462121 [Multi-domain]  Cd Length: 78  Bit Score: 63.13  E-value: 2.19e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488974127  349 VRQIRFSGNDTSRDAVLRREMRQMEGAWLNNEKVDQG----KVRLDRTGFFENVEQQIVPVNGTADQVDVVYKVKER 421
Cdd:pfam07244   2 IGDINFEGNKKTKDEELRRLLGLKEGDVYNREKLEEDkealKDRYGRLGYFDASVSTNVEIDDEVNTVDLTFNVDEG 78
POTRA pfam07244
Surface antigen variable number repeat; This family is found primarily in bacterial surface ...
267-344 1.36e-06

Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.


Pssm-ID: 462121 [Multi-domain]  Cd Length: 78  Bit Score: 46.57  E-value: 1.36e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488974127  267 RVDRTQVTGDLAQHGPEIEALAQPLAGAWYSGAQVTTVENEIKKHFGKYGYAWPQVTSTPEIDDAHHRVVLHIQVNAG 344
Cdd:pfam07244   1 KIGDINFEGNKKTKDEELRRLLGLKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVEIDDEVNTVDLTFNVDEG 78
3a0901s03IAP75 TIGR00992
chloroplast envelope protein translocase, IAP75 family; Two families of proteins are involved ...
232-673 5.09e-06

chloroplast envelope protein translocase, IAP75 family; Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 130065 [Multi-domain]  Cd Length: 718  Bit Score: 49.96  E-value: 5.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  232 DRGY---ARFAIESTQVSMTPD---KKSLYITIALNEGERYRVDR-------TQVTGDLAQHGPEIEALaqplagawySG 298
Cdd:TIGR00992 152 DRFRcinVGLMPQSKPLEMDVDmevKEKPEFTRRLEIRYKRRIAEarpcllpQEVVDETFGMLYGQGIV---------SA 222
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  299 AQVTTVENEIKKHFGKYGYAWPQVTSTPEIDDahHRVVLHIQVNAGRRYSVRQIRFSGN---DTSRDAVLRREMRQ--ME 373
Cdd:TIGR00992 223 RLLQEIRDRVQEWYHNEGYACAQVVNFGNLNT--DEVVCEVVEGDITNLQIQFFDKLGNvveGNTRDPVVTRELPKqlKP 300
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  374 GAWLNNEKVDQGKVRLDRTGFFENVEQQIVPVNGTADQVDVVYKVKERNTGSFNVGL-------GFGTDSGVSYQLGVT- 445
Cdd:TIGR00992 301 GDVFNIEAGKTALQNINSLGLFSNIEVNPRPDEMNEGEIIVEIKLKELEQKSAEVSTewsivpgRGGRPTLASSQPGGTi 380
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  446 -------QDNWLGTGNSVSFNGTRNSYQSYL-ELGATNPWftVDGISlggKIFYNSYDASDADAGSYNQQSYGLGSTLGF 517
Cdd:TIGR00992 381 tfehrnlQGLNRSLGGSVTTSNFLNPQDDLLfKVEYTHPY--LDGVD---NPRNRTYTASCFNSRKLSPVFTGGPGVNEV 455
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  518 PISENNSLNLGLDYVHNRltnMDPELTTWRYLSSRGIEPSVVTKDGDSGAK------YSANDYFVSL-GWGyndLDRGFF 590
Cdd:TIGR00992 456 PSIWVDRAGVKANITENF---ARQSKFTYGLVMEEIFTRDESRHINANGQRslpsgpISADGPPTTLsGTG---VDRMAF 529
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488974127  591 PRAG----NKSSLSGKV-----------TLP-GSDNSYY-KLSFDTAQYLPLsenkRWVWMERLRA--------GYAGGL 645
Cdd:TIGR00992 530 LQANitrdNTNFVNGPTvgsrvrfqvdqGLGvGSGFPFFnRHQLTYTKFIQL----NWVELGAGKSpppvlvlhGHYGGC 605
                         490       500
                  ....*....|....*....|....*...
gi 488974127  646 DGkSVPFYDNFYAGGSSSVRGFSSNTIG 673
Cdd:TIGR00992 606 VG-DLPSYDAFILGGPYSVRGYNMGELG 632
TamA COG0729
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; ...
24-92 1.08e-03

Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440493 [Multi-domain]  Cd Length: 574  Bit Score: 42.58  E-value: 1.08e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488974127  24 YQVDDIRFEGLQRVtvGAALLS--MPLHAGDAVTPEDVSEAVRALYASGNFENVQI-----LRDGKTL--VVQVKERP 92
Cdd:COG0729  187 YRFGEITVEGLSRV--PEDFLRrlAPFKPGEPYSPDKLLELQQRLQSTGYFSSVRVtpdedPAPDGTVpvTVTLTERK 262
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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