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Conserved domains on  [gi|488972480|ref|WP_002883398|]
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MULTISPECIES: DNA helicase II [Klebsiella]

Protein Classification

ATP-dependent DNA helicase( domain architecture ID 11485500)

ATP-dependent DNA helicase utilizes the energy from ATP hydrolysis to unwind double-stranded DNA; similar to DNA helicase II (UvrD), which displays DNA-dependent ATPase activity and is involved in post-incision events of nucleotide excision repair and methyl-directed mismatch repair

EC:  3.6.4.12
Gene Ontology:  GO:0003678|GO:0005524

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
uvrD PRK11773
DNA-dependent helicase II; Provisional
1-720 0e+00

DNA-dependent helicase II; Provisional


:

Pssm-ID: 236976 [Multi-domain]  Cd Length: 721  Bit Score: 1604.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   1 MDVSYLLDSLNDKQREAVAASRTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80
Cdd:PRK11773   1 MDVSYLLDSLNDKQREAVAAPLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  81 TQGGMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQ 160
Cdd:PRK11773  81 SQGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDDQLRLLKRLIKALNLDEKQWPPRQAQWYINGQKDEGLRPQHIQ 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 161 SYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDT 240
Cdd:PRK11773 161 SYGDPVEQTWLKIYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYQERFTHILVDEFQDTNAIQYAWIRLLAGDT 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 241 GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGADGEPISL 320
Cdd:PRK11773 241 GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTANILKAANALIANNNGRLGKELWTDGGDGEPISL 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 321 YCAFNDLDEARFVVNRIKTWQENGGALEQCAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400
Cdd:PRK11773 321 YCAFNELDEARFVVERIKTWQDNGGALSDCAILYRSNAQSRVLEEALLQAGIPYRIYGGMRFFERQEIKDALAYLRLIAN 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQASRELLKEKALAGRAASALQRFMELIDALAQETTDMPLHVQ 480
Cdd:PRK11773 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQACRALLQEKVLAGRAASALQRFIELIDALAQETADMPLHEQ 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 481 TDRVIKDSGLRAMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLH 560
Cdd:PRK11773 481 TDRVIKDSGLRAMYEQEKGEKGQARIENLEELVTATRQFSYPDEDEDLTPLQAFLSHAALEAGEGQADAHEDAVQLMTLH 560
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 561 SAKGLEFPQVFIVGVEEGMFPSQMALDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPQEC 640
Cdd:PRK11773 561 SAKGLEFPLVFIVGMEEGLFPSQMSLEEGGRLEEERRLAYVGITRAMQKLTLTYAESRRLYGKEVYHRPSRFIREIPEEC 640
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 641 VEEVRLRATVSRPVNHQRLGAPIA-ESDTGYKLGQRVRHPKFGEGTIVNLEGSGEHSRLQVAFQGQGIKWLVAAYARLEA 719
Cdd:PRK11773 641 VEEVRLRATVSRPVSHQRMGTPAVeANDSGFKLGQRVRHPKFGEGTIVNFEGSGAHARVQVAFQGQGIKWLVAAYAKLEA 720

                 .
gi 488972480 720 V 720
Cdd:PRK11773 721 V 721
 
Name Accession Description Interval E-value
uvrD PRK11773
DNA-dependent helicase II; Provisional
1-720 0e+00

DNA-dependent helicase II; Provisional


Pssm-ID: 236976 [Multi-domain]  Cd Length: 721  Bit Score: 1604.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   1 MDVSYLLDSLNDKQREAVAASRTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80
Cdd:PRK11773   1 MDVSYLLDSLNDKQREAVAAPLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  81 TQGGMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQ 160
Cdd:PRK11773  81 SQGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDDQLRLLKRLIKALNLDEKQWPPRQAQWYINGQKDEGLRPQHIQ 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 161 SYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDT 240
Cdd:PRK11773 161 SYGDPVEQTWLKIYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYQERFTHILVDEFQDTNAIQYAWIRLLAGDT 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 241 GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGADGEPISL 320
Cdd:PRK11773 241 GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTANILKAANALIANNNGRLGKELWTDGGDGEPISL 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 321 YCAFNDLDEARFVVNRIKTWQENGGALEQCAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400
Cdd:PRK11773 321 YCAFNELDEARFVVERIKTWQDNGGALSDCAILYRSNAQSRVLEEALLQAGIPYRIYGGMRFFERQEIKDALAYLRLIAN 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQASRELLKEKALAGRAASALQRFMELIDALAQETTDMPLHVQ 480
Cdd:PRK11773 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQACRALLQEKVLAGRAASALQRFIELIDALAQETADMPLHEQ 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 481 TDRVIKDSGLRAMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLH 560
Cdd:PRK11773 481 TDRVIKDSGLRAMYEQEKGEKGQARIENLEELVTATRQFSYPDEDEDLTPLQAFLSHAALEAGEGQADAHEDAVQLMTLH 560
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 561 SAKGLEFPQVFIVGVEEGMFPSQMALDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPQEC 640
Cdd:PRK11773 561 SAKGLEFPLVFIVGMEEGLFPSQMSLEEGGRLEEERRLAYVGITRAMQKLTLTYAESRRLYGKEVYHRPSRFIREIPEEC 640
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 641 VEEVRLRATVSRPVNHQRLGAPIA-ESDTGYKLGQRVRHPKFGEGTIVNLEGSGEHSRLQVAFQGQGIKWLVAAYARLEA 719
Cdd:PRK11773 641 VEEVRLRATVSRPVSHQRMGTPAVeANDSGFKLGQRVRHPKFGEGTIVNFEGSGAHARVQVAFQGQGIKWLVAAYAKLEA 720

                 .
gi 488972480 720 V 720
Cdd:PRK11773 721 V 721
uvrD TIGR01075
DNA helicase II; Designed to identify uvrD members of the uvrD/rep subfamily. [DNA metabolism, ...
6-718 0e+00

DNA helicase II; Designed to identify uvrD members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 130147 [Multi-domain]  Cd Length: 715  Bit Score: 1403.01  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480    6 LLDSLNDKQREAVAASRTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTTQGGM 85
Cdd:TIGR01075   1 LLDGLNDKQREAVAAPPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGTSARGM 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   86 WVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNP 165
Cdd:TIGR01075  81 WIGTFHGLAHRLLRAHHLDAGLPQDFQILDSDDQLRLLKRLIKALNLDEKQWPPRQAMWYINNQKDEGLRPSHIQAFDNP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  166 VEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMI 245
Cdd:TIGR01075 161 VERTWIKIYQAYQEACDRAGLVDFAELLLRAHELLRNKPHILQHYQERFTHILVDEFQDTNKIQYAWIRLLAGNTGNVMI 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  246 VGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGADGEPISLYCAFN 325
Cdd:TIGR01075 241 VGDDDQSIYGWRGAQVENIQKFLKDFPGAETIRLEQNYRSTANILAAANALIANNDERLGKNLWTDGEVGEPISLYSAFN 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  326 DLDEARFVVNRIKTWQENGGALEQCAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDA 405
Cdd:TIGR01075 321 ELDEARFVVSRIKTWQRNGGALDECAVLYRSNAQSRVLEEALLQASIPYRIYGGMRFFERQEIKDALAYLRLIANRNDDA 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  406 AFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQASRELLKEKALAGRAASALQRFMELIDALAQETTDMPLHVQTDRVI 485
Cdd:TIGR01075 401 AFERVINTPTRGIGDRTLDVVRQAARDRGLTLWQAARELTQEKVLAGRAASALQRFVELIEALANETADMPLHVQTDHVI 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  486 KDSGLRAMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGL 565
Cdd:TIGR01075 481 KDSGLREMYQQEKGEKGQARIENLEELVTATRQFSLPENDEDMTPLTAFLSHAALEAGEGQADAGQDAVQLMTLHSAKGL 560
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  566 EFPQVFIVGVEEGMFPSQMALDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPQECVEEVR 645
Cdd:TIGR01075 561 EFPLVFLVGMEEGMFPSQMSLDEGGRLEEERRLAYVGITRAMQKLTITYAETRRLYGKEVYHIPSRFIRELPEECLHEVR 640
                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488972480  646 LRATVSRPVNHQRLGAPIAES--DTGYKLGQRVRHPKFGEGTIVNLEGSGEHSRLQVAFQGQGIKWLVAAYARLE 718
Cdd:TIGR01075 641 LRAQVSRPTNLGRVGTPSVDEinDAGFKLGQRVRHPKFGEGTIINAEGSGEHSRLQIAFQGQGIKWLVAAYAKLE 715
UvrD COG0210
Superfamily I DNA or RNA helicase [Replication, recombination and repair];
6-720 0e+00

Superfamily I DNA or RNA helicase [Replication, recombination and repair];


Pssm-ID: 439980 [Multi-domain]  Cd Length: 721  Bit Score: 968.25  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   6 LLDSLNDKQREAVAASRTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTTQGGM 85
Cdd:COG0210    3 LLAGLNPEQRAAVEHPEGPLLVLAGAGSGKTRVLTHRIAYLIAEGGVDPEQILAVTFTNKAAREMRERIEALLGRLARGL 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  86 WVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSY--G 163
Cdd:COG0210   83 WVGTFHSLALRILRRHAELLGLPPNFTILDGDDQLRLIKELLKELGLDEKRFPPRELLSLISRAKNEGLTPEELAELlaA 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 164 NPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKV 243
Cdd:COG0210  163 DPEWRAAAELYEAYQERLRANNALDFDDLLLLAVRLLEENPEVLEKYQNRFRYILVDEYQDTNPAQYELLRLLAGDGRNL 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 244 MIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGADGEPISLYCA 323
Cdd:COG0210  243 CVVGDDDQSIYGFRGADPENILRFEKDFPDAKVIKLEQNYRSTQNILDAANAVIANNPGRLGKNLWTDNGEGEKVRLYVA 322
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 324 FNDLDEARFVVNRIKTWQENGGALEQCAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRND 403
Cdd:COG0210  323 PDEEEEARFVADEIRELHEEGVPLSDIAVLYRTNAQSRALEEALRRAGIPYRVVGGLRFYERAEIKDLLAYLRLLANPDD 402
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 404 DAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQASRELLKEKALAGRAASALQRFMELIDALAQETTDMPLHVQTDR 483
Cdd:COG0210  403 DVALLRILNVPRRGIGAATLERLREAAREEGISLLEALRDLGELAGLSGRAAKALRRFAELLEALRAAAERLPLEELLEA 482
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 484 VIKDSGLRAMYEQEKGEKGQTRIENLEELVTATRQFsynEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAK 563
Cdd:COG0210  483 LLDESGYEEELREEAGEEAERRLENLEELVDAAARF---EERNPGASLEAFLEELALLSDLDAADEDEDAVTLMTLHAAK 559
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 564 GLEFPQVFIVGVEEGMFPSQMALDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPQECVEE 643
Cdd:COG0210  560 GLEFPVVFLVGLEEGLFPHQRSLDDEEELEEERRLFYVAITRARERLYLTYAASRRLWGETQDNEPSRFLDELPEELLEW 639
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488972480 644 VRLRATVSRPVNHQRLGAPIAESDTGYKLGQRVRHPKFGEGTIVNLEGSGEHSRLQVAFQGQGIKWLVAAYARLEAV 720
Cdd:COG0210  640 VRPKAEAAAAAASAAAALPASGAGAAALAAGAAAAAAAAGGGAAVAGAGLGRAAAAGGADGGAAGAGGGLAAVALTV 716
UvrD-helicase pfam00580
UvrD/REP helicase N-terminal domain; The Rep family helicases are composed of four structural ...
10-272 1.13e-118

UvrD/REP helicase N-terminal domain; The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyze ATP dependent unwinding of double stranded DNA to single stranded DNA. Swiss:P23478, Swiss:P08394 have large insertions near to the carboxy-terminus relative to other members of the family.


Pssm-ID: 395462 [Multi-domain]  Cd Length: 267  Bit Score: 356.56  E-value: 1.13e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   10 LNDKQREAVAASRTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTTQ-GGMWVG 88
Cdd:pfam00580   1 LNPEQRKAVTHLGGPLLVLAGAGSGKTRVLTERIAYLILEGGIDPEEILAVTFTNKAAREMKERILKLLGKAElSELNIS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   89 TFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLKRLIKA--MNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSY-GNP 165
Cdd:pfam00580  81 TFHSFCLRILRKYANRIGLLPNFSILDELDQLALLKELLEKdrLNLDPKLLRKLELKELISKAKNRLLSPEELQQGaADP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  166 VEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMI 245
Cdd:pfam00580 161 RDKLAAEFYQEYQERLKENNALDFDDLLLLTLELLRSDPELLEAYRERFKYILVDEFQDTNPIQYRLLKLLAGGHENLFL 240
                         250       260
                  ....*....|....*....|....*..
gi 488972480  246 VGDDDQSIYGWRGAQVENIQRFLNDFP 272
Cdd:pfam00580 241 VGDPDQSIYGFRGADIENILKFEKDFP 267
DEXQc_UvrD cd17932
DEXQD-box helicase domain of UvrD; UvrD is a highly conserved helicase involved in mismatch ...
11-283 1.85e-86

DEXQD-box helicase domain of UvrD; UvrD is a highly conserved helicase involved in mismatch repair, nucleotide excision repair, and recombinational repair. It plays a critical role in maintaining genomic stability and facilitating DNA lesion repair in many prokaryotic species including Helicobacter pylori and Escherichia coli. UvrD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 350690 [Multi-domain]  Cd Length: 189  Bit Score: 270.16  E-value: 1.85e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  11 NDKQREAVAASRTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTTQ-GGMWVGT 89
Cdd:cd17932    1 NPEQREAVTHPDGPLLVLAGAGSGKTRVLTHRIAYLILEGGVPPERILAVTFTNKAAKEMRERLRKLLGEQLaSGVWIGT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  90 FHGLAHRLLRAHHldanlpqdfqildsedqlrllkrlikamnldekqwpprqamwyinsqkdeglrphhiqsygnpveqt 169
Cdd:cd17932   81 FHSFALRILRRYG------------------------------------------------------------------- 93
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 170 wqkvyqayqeacdraglvDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDD 249
Cdd:cd17932   94 ------------------DFDDLLLYALELLEENPDVREKLQSRFRYILVDEYQDTNPLQYELLKLLAGDGKNLFVVGDD 155
                        250       260       270
                 ....*....|....*....|....*....|....
gi 488972480 250 DQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNY 283
Cdd:cd17932  156 DQSIYGFRGADPENILDFEKDFPDAKVIKLEENY 189
 
Name Accession Description Interval E-value
uvrD PRK11773
DNA-dependent helicase II; Provisional
1-720 0e+00

DNA-dependent helicase II; Provisional


Pssm-ID: 236976 [Multi-domain]  Cd Length: 721  Bit Score: 1604.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   1 MDVSYLLDSLNDKQREAVAASRTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80
Cdd:PRK11773   1 MDVSYLLDSLNDKQREAVAAPLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  81 TQGGMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQ 160
Cdd:PRK11773  81 SQGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDDQLRLLKRLIKALNLDEKQWPPRQAQWYINGQKDEGLRPQHIQ 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 161 SYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDT 240
Cdd:PRK11773 161 SYGDPVEQTWLKIYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYQERFTHILVDEFQDTNAIQYAWIRLLAGDT 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 241 GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGADGEPISL 320
Cdd:PRK11773 241 GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTANILKAANALIANNNGRLGKELWTDGGDGEPISL 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 321 YCAFNDLDEARFVVNRIKTWQENGGALEQCAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400
Cdd:PRK11773 321 YCAFNELDEARFVVERIKTWQDNGGALSDCAILYRSNAQSRVLEEALLQAGIPYRIYGGMRFFERQEIKDALAYLRLIAN 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQASRELLKEKALAGRAASALQRFMELIDALAQETTDMPLHVQ 480
Cdd:PRK11773 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQACRALLQEKVLAGRAASALQRFIELIDALAQETADMPLHEQ 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 481 TDRVIKDSGLRAMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLH 560
Cdd:PRK11773 481 TDRVIKDSGLRAMYEQEKGEKGQARIENLEELVTATRQFSYPDEDEDLTPLQAFLSHAALEAGEGQADAHEDAVQLMTLH 560
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 561 SAKGLEFPQVFIVGVEEGMFPSQMALDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPQEC 640
Cdd:PRK11773 561 SAKGLEFPLVFIVGMEEGLFPSQMSLEEGGRLEEERRLAYVGITRAMQKLTLTYAESRRLYGKEVYHRPSRFIREIPEEC 640
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 641 VEEVRLRATVSRPVNHQRLGAPIA-ESDTGYKLGQRVRHPKFGEGTIVNLEGSGEHSRLQVAFQGQGIKWLVAAYARLEA 719
Cdd:PRK11773 641 VEEVRLRATVSRPVSHQRMGTPAVeANDSGFKLGQRVRHPKFGEGTIVNFEGSGAHARVQVAFQGQGIKWLVAAYAKLEA 720

                 .
gi 488972480 720 V 720
Cdd:PRK11773 721 V 721
uvrD TIGR01075
DNA helicase II; Designed to identify uvrD members of the uvrD/rep subfamily. [DNA metabolism, ...
6-718 0e+00

DNA helicase II; Designed to identify uvrD members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 130147 [Multi-domain]  Cd Length: 715  Bit Score: 1403.01  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480    6 LLDSLNDKQREAVAASRTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTTQGGM 85
Cdd:TIGR01075   1 LLDGLNDKQREAVAAPPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGTSARGM 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   86 WVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNP 165
Cdd:TIGR01075  81 WIGTFHGLAHRLLRAHHLDAGLPQDFQILDSDDQLRLLKRLIKALNLDEKQWPPRQAMWYINNQKDEGLRPSHIQAFDNP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  166 VEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMI 245
Cdd:TIGR01075 161 VERTWIKIYQAYQEACDRAGLVDFAELLLRAHELLRNKPHILQHYQERFTHILVDEFQDTNKIQYAWIRLLAGNTGNVMI 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  246 VGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGADGEPISLYCAFN 325
Cdd:TIGR01075 241 VGDDDQSIYGWRGAQVENIQKFLKDFPGAETIRLEQNYRSTANILAAANALIANNDERLGKNLWTDGEVGEPISLYSAFN 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  326 DLDEARFVVNRIKTWQENGGALEQCAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDA 405
Cdd:TIGR01075 321 ELDEARFVVSRIKTWQRNGGALDECAVLYRSNAQSRVLEEALLQASIPYRIYGGMRFFERQEIKDALAYLRLIANRNDDA 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  406 AFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQASRELLKEKALAGRAASALQRFMELIDALAQETTDMPLHVQTDRVI 485
Cdd:TIGR01075 401 AFERVINTPTRGIGDRTLDVVRQAARDRGLTLWQAARELTQEKVLAGRAASALQRFVELIEALANETADMPLHVQTDHVI 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  486 KDSGLRAMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGL 565
Cdd:TIGR01075 481 KDSGLREMYQQEKGEKGQARIENLEELVTATRQFSLPENDEDMTPLTAFLSHAALEAGEGQADAGQDAVQLMTLHSAKGL 560
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  566 EFPQVFIVGVEEGMFPSQMALDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPQECVEEVR 645
Cdd:TIGR01075 561 EFPLVFLVGMEEGMFPSQMSLDEGGRLEEERRLAYVGITRAMQKLTITYAETRRLYGKEVYHIPSRFIRELPEECLHEVR 640
                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488972480  646 LRATVSRPVNHQRLGAPIAES--DTGYKLGQRVRHPKFGEGTIVNLEGSGEHSRLQVAFQGQGIKWLVAAYARLE 718
Cdd:TIGR01075 641 LRAQVSRPTNLGRVGTPSVDEinDAGFKLGQRVRHPKFGEGTIINAEGSGEHSRLQIAFQGQGIKWLVAAYAKLE 715
UvrD COG0210
Superfamily I DNA or RNA helicase [Replication, recombination and repair];
6-720 0e+00

Superfamily I DNA or RNA helicase [Replication, recombination and repair];


Pssm-ID: 439980 [Multi-domain]  Cd Length: 721  Bit Score: 968.25  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   6 LLDSLNDKQREAVAASRTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTTQGGM 85
Cdd:COG0210    3 LLAGLNPEQRAAVEHPEGPLLVLAGAGSGKTRVLTHRIAYLIAEGGVDPEQILAVTFTNKAAREMRERIEALLGRLARGL 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  86 WVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSY--G 163
Cdd:COG0210   83 WVGTFHSLALRILRRHAELLGLPPNFTILDGDDQLRLIKELLKELGLDEKRFPPRELLSLISRAKNEGLTPEELAELlaA 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 164 NPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKV 243
Cdd:COG0210  163 DPEWRAAAELYEAYQERLRANNALDFDDLLLLAVRLLEENPEVLEKYQNRFRYILVDEYQDTNPAQYELLRLLAGDGRNL 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 244 MIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGADGEPISLYCA 323
Cdd:COG0210  243 CVVGDDDQSIYGFRGADPENILRFEKDFPDAKVIKLEQNYRSTQNILDAANAVIANNPGRLGKNLWTDNGEGEKVRLYVA 322
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 324 FNDLDEARFVVNRIKTWQENGGALEQCAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRND 403
Cdd:COG0210  323 PDEEEEARFVADEIRELHEEGVPLSDIAVLYRTNAQSRALEEALRRAGIPYRVVGGLRFYERAEIKDLLAYLRLLANPDD 402
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 404 DAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQASRELLKEKALAGRAASALQRFMELIDALAQETTDMPLHVQTDR 483
Cdd:COG0210  403 DVALLRILNVPRRGIGAATLERLREAAREEGISLLEALRDLGELAGLSGRAAKALRRFAELLEALRAAAERLPLEELLEA 482
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 484 VIKDSGLRAMYEQEKGEKGQTRIENLEELVTATRQFsynEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAK 563
Cdd:COG0210  483 LLDESGYEEELREEAGEEAERRLENLEELVDAAARF---EERNPGASLEAFLEELALLSDLDAADEDEDAVTLMTLHAAK 559
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 564 GLEFPQVFIVGVEEGMFPSQMALDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPQECVEE 643
Cdd:COG0210  560 GLEFPVVFLVGLEEGLFPHQRSLDDEEELEEERRLFYVAITRARERLYLTYAASRRLWGETQDNEPSRFLDELPEELLEW 639
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488972480 644 VRLRATVSRPVNHQRLGAPIAESDTGYKLGQRVRHPKFGEGTIVNLEGSGEHSRLQVAFQGQGIKWLVAAYARLEAV 720
Cdd:COG0210  640 VRPKAEAAAAAASAAAALPASGAGAAALAAGAAAAAAAAGGGAAVAGAGLGRAAAAGGADGGAAGAGGGLAAVALTV 716
pcrA TIGR01073
ATP-dependent DNA helicase PcrA; Designed to identify pcrA members of the uvrD/rep subfamily. ...
6-718 0e+00

ATP-dependent DNA helicase PcrA; Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273429 [Multi-domain]  Cd Length: 726  Bit Score: 780.10  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480    6 LLDSLNDKQREAVAASRTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTTQGGM 85
Cdd:TIGR01073   1 LLAHLNPEQREAVKTTEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGPVAEDI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   86 WVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQ-SYGN 164
Cdd:TIGR01073  81 WISTFHSMCVRILRRDIDRIGINRNFSIIDPTDQLSLMKTILKDKNLDPKKFEPRSILGTISNAKNELLPPEDFAkEATN 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  165 PVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVM 244
Cdd:TIGR01073 161 YFEKVVAEVYQEYQKRLLRNNALDFDDLIMTTINLFQRVPDVLEYYQRKFQYIHVDEYQDTNRAQYTLVRLLASRFRNLC 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  245 IVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGADGEPISLYCAF 324
Cdd:TIGR01073 241 VVGDADQSIYGWRGADIQNILSFEKDYPNATTILLEQNYRSTKNILQAANEVIEHNSNRKPKNLWTENSSGDKITYYEAD 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  325 NDLDEARFVVNRIKTWQENG-GALEQCAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRND 403
Cdd:TIGR01073 321 TERDEAQFVAGEIDKLVKNGeRKYGDFAILYRTNAQSRVFEETLLKANIPYKIVGGLKFYDRKEIKDILAYLRVIANPDD 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  404 DAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQASRELLKEKALAGRAASALQRFMELIDALAQETTDMPLHVQTDR 483
Cdd:TIGR01073 401 DLSLLRIINVPKRGIGASSLEKIVNYALELNISLFEAIGEIDEIGGLAAKSANALLAFATMIENLRQQQEYLSPTELVEE 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  484 VIKDSGLRAMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEdlmPLQAFLSHAALEAGEGQADTWQ--DAVQLMTLHS 561
Cdd:TIGR01073 481 VLDKSGYREMLKAEKTEEAQSRLENLDEFLSVTKEFEDESEDK---SLIDFLTDLALVSDLDELEETEegGAVTLMTLHA 557
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  562 AKGLEFPQVFIVGVEEGMFPSQMALDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPQECV 641
Cdd:TIGR01073 558 AKGLEFPVVFLIGMEEGVFPHSRSLMDEKELEEERRLAYVGITRAEEELYLTHATMRTLFGRIQMNPPSRFLNEIPAELL 637
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  642 EEVR---------------LRATVSRPVNHQrlgaPIAESDTG-YKLGQRVRHPKFGEGTIVNLEGSGEHSRLQVAFQGQ 705
Cdd:TIGR01073 638 ETAStgrrtgatdpkgpsiRQAGASRPTTSQ----PTAGGDTLsWAVGDRVNHKKWGIGTVVSVKGGGDDQELDIAFPSI 713
                         730
                  ....*....|...
gi 488972480  706 GIKWLVAAYARLE 718
Cdd:TIGR01073 714 GVKRLLAAFAPIE 726
rep TIGR01074
ATP-dependent DNA helicase Rep; Designed to identify rep members of the uvrD/rep subfamily. ...
9-664 0e+00

ATP-dependent DNA helicase Rep; Designed to identify rep members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 130146 [Multi-domain]  Cd Length: 664  Bit Score: 565.92  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480    9 SLNDKQREAVAASRTNMLVLAGAGSGKTRVLVHRIAWLlsVENC--SPYSIMAVTFTNKAAAEMRHRIGQLMGTTQG-GM 85
Cdd:TIGR01074   1 KLNPQQQEAVEYVTGPCLVLAGAGSGKTRVITNKIAYL--IQNCgyKARNIAAVTFTNKAAREMKERVAKTLGKGEArGL 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   86 WVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLKRLIKAMnLDEKQWPPRQAMWYINSQKDEGLRPHHI-QSYGN 164
Cdd:TIGR01074  79 TISTFHTLGLDIIKREYNALGYKSNFSLFDETDQLALLKELTEGL-IKDDKDLLDKLISTISNWKNDLLTPEQAlASARG 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  165 PVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVM 244
Cdd:TIGR01074 158 EREQTFAHCYALYQAHLRAYNALDFDDLILLPTLLLQQNEEVRNRWQNKIRYLLVDEYQDTNTSQYELVKLLVGDRARFT 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  245 IVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGADGEPISLYCAF 324
Cdd:TIGR01074 238 VVGDDDQSIYSWRGARPENLVLLKEDFPQLKVIKLEQNYRSTGRILKAANILIANNPHVFEKKLFSELGYGEKIKVIECN 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  325 NDLDEARFVVNRIKTWQENGGA-LEQCAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRND 403
Cdd:TIGR01074 318 NEEHEAERIAGEIIAHKLVNKTqYKDYAILYRGNHQSRLLEKALMQNRIPYKLSGGTSFFSRPEIKDLLSYLRLLVNPDD 397
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  404 DAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQASRELLKEKALAGRAASALQRFMELIDALAQETTDMPLHVQTDR 483
Cdd:TIGR01074 398 DAAFLRIVNTPKREIGPATLEKLGELAMERNKSLFTASFDMGLLQTLSGRGYESLQRFTDWLVEIRRLAERSEPIEAVRS 477
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  484 VIKDSGLRA-MYEQEKGEKG-QTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAAL----EAGEGQADTwqDAVQLM 557
Cdd:TIGR01074 478 LIEDIDYENwLYETSPSPKAaEMRMKNVNTLFSWFKEMLEGDEEDEPMTLTQVVTRLTLrdmlERGEDEEEL--DQVQLM 555
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  558 TLHSAKGLEFPQVFIVGVEEGMFPSQMALDEgGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELP 637
Cdd:TIGR01074 556 TLHASKGLEFPYVFIVGMEEGILPHQSSIEE-DNVEEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLDELP 634
                         650       660
                  ....*....|....*....|....*..
gi 488972480  638 QECVEEVRLRATVSRPVNHQRLGAPIA 664
Cdd:TIGR01074 635 QEDLQWEGDDPVVSAEEKMEKGQAHLA 661
PRK10919 PRK10919
ATP-dependent DNA helicase Rep; Provisional
10-651 3.52e-149

ATP-dependent DNA helicase Rep; Provisional


Pssm-ID: 182838 [Multi-domain]  Cd Length: 672  Bit Score: 450.06  E-value: 3.52e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  10 LNDKQREAVAASRTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTTQG-GMWVG 88
Cdd:PRK10919   3 LNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRKEArGLMIS 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  89 TFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLKRLIKAMnLDEKQWPPRQAMWYINSQKDEGLRPHH-IQSYGNPVE 167
Cdd:PRK10919  83 TFHTLGLDIIKREYAALGMKSNFSLFDDTDQLALLKELTEGL-IEDDKVLLQQLISTISNWKNDLKTPAQaAAGAKGERD 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 168 QTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVG 247
Cdd:PRK10919 162 RIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEEVRERWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVG 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 248 DDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGADGEPISLYCAFNDL 327
Cdd:PRK10919 242 DDDQSIYSWRGARPQNLVLLSQDFPALQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFSELGYGDELKVLSANNEE 321
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 328 DEARFVVNR-IKTWQENGGALEQCAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAA 406
Cdd:PRK10919 322 HEAERVTGElIAHHFVNKTQYKDYAILYRGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSA 401
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 407 FERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQASRELLKEKALAGRAASALQRFMELIDALAQETTDMPLHVQTDRVIK 486
Cdd:PRK10919 402 FLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQTLSGRGYESLTRFTHWLAEIQRLAEREPVAAVRDLIHG 481
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 487 DSGLRAMYEQEKGEK-GQTRIENLEELVT-ATRQFSYNEEDEDLMPLQA---FLSHAALEAGEGQADTwqDAVQLMTLHS 561
Cdd:PRK10919 482 IDYESWLYETSPSPKaAEMRMKNVNQLFSwMTEMLEGSELDEPMTLTQVvtrFTLRDMMERGESEEEL--DQVQLMTLHA 559
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 562 AKGLEFPQVFIVGVEEGMFPSQMALDEGGrLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPQECV 641
Cdd:PRK10919 560 SKGLEFPYVYLVGMEEGLLPHQSSIDEDN-IDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDL 638
                        650
                 ....*....|
gi 488972480 642 EEVRLRATVS 651
Cdd:PRK10919 639 IWEQERKVVS 648
UvrD-helicase pfam00580
UvrD/REP helicase N-terminal domain; The Rep family helicases are composed of four structural ...
10-272 1.13e-118

UvrD/REP helicase N-terminal domain; The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyze ATP dependent unwinding of double stranded DNA to single stranded DNA. Swiss:P23478, Swiss:P08394 have large insertions near to the carboxy-terminus relative to other members of the family.


Pssm-ID: 395462 [Multi-domain]  Cd Length: 267  Bit Score: 356.56  E-value: 1.13e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   10 LNDKQREAVAASRTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTTQ-GGMWVG 88
Cdd:pfam00580   1 LNPEQRKAVTHLGGPLLVLAGAGSGKTRVLTERIAYLILEGGIDPEEILAVTFTNKAAREMKERILKLLGKAElSELNIS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   89 TFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLKRLIKA--MNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSY-GNP 165
Cdd:pfam00580  81 TFHSFCLRILRKYANRIGLLPNFSILDELDQLALLKELLEKdrLNLDPKLLRKLELKELISKAKNRLLSPEELQQGaADP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  166 VEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMI 245
Cdd:pfam00580 161 RDKLAAEFYQEYQERLKENNALDFDDLLLLTLELLRSDPELLEAYRERFKYILVDEFQDTNPIQYRLLKLLAGGHENLFL 240
                         250       260
                  ....*....|....*....|....*..
gi 488972480  246 VGDDDQSIYGWRGAQVENIQRFLNDFP 272
Cdd:pfam00580 241 VGDPDQSIYGFRGADIENILKFEKDFP 267
RecB COG1074
3#-5# helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V) [Replication, ...
9-619 3.53e-103

3#-5# helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];


Pssm-ID: 440692 [Multi-domain]  Cd Length: 866  Bit Score: 335.39  E-value: 3.53e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   9 SLNDKQREAVAASRTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG--------- 79
Cdd:COG1074    5 PWTDAQRRALDPLGGSVLVEASAGSGKTYTLVARYLRLLLERGLDPEEILVVTFTRAAAAEMRERIRERLAeaadledpd 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  80 ---------------TTQGGMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQL------------------------ 120
Cdd:COG1074   85 leelararrrlaralENLDRAAISTIHSFCQRLLREFAFEAGLDPNFELLDDAEALlleeavddllreayapldalalar 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 121 -------------RLLKRLIKAMNldEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNPVEQTWQK--------------V 173
Cdd:COG1074  165 lldafgrdddsleELLLALYKLRS--RPDWLEELAELDEALEALREALLKAKEALAALREALAAAaapllaallrllaaV 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 174 YQAYQEACDRAGLVDFAELLLRAHELwLNKPH---ILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGD----TGKVMIV 246
Cdd:COG1074  243 LARYERRKRERGLLDFDDLLHRALRL-LRDEDapwVAERLRERYRHILVDEFQDTSPLQWEILRRLAGEaladGRTLFLV 321
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 247 GDDDQSIYGWRGAQVENIQRFLNDFPG---AETIRLEQNYRSTSNILSAANALIENNNG--------------RLGK--- 306
Cdd:COG1074  322 GDPKQSIYRFRGADPELFLEARRALEGrvdGERLTLTTNFRSTPEVVDAVNALFAQLMGagfgeipyepvealRPGAypa 401
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 307 -KLWTDGADGEPISLYcafnDLDEARFVVNRIKTWQENGGALEQC---------AILYRSNAQSRVLEEALLQASMPYRI 376
Cdd:COG1074  402 vELWPLEPDDVSEEDA----REREARAVAARIRRLLAEGTTVEGGgrpvrpgdiAVLVRTRSEAAAIARALKAAGIPVAA 477
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 377 YGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQtsRDRQLTLWQAsrellkekaLagRAAS 456
Cdd:COG1074  478 SDRLSLFESPEVRDLLALLRALLNPEDDLALAAVLRSPLFGLSDEDLAALAA--DRKGESLWEA---------L--RAYE 544
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 457 ALQRFMELIDALAQETTDMPLHVQTDRVIKDSGLRAMY-EQEKGEKGQTRIENLEELVTATRQFSyNEEDEDLMPLQAFL 535
Cdd:COG1074  545 RLARALERLRALRELARRLGLAELLERLLEETGLLERLlALPGGERRLANLLHLDELLQLALEYE-QTGGPGLAGFLRWL 623
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 536 SHAALEAGEGQA---DTWQDAVQLMTLHSAKGLEFPQVFIVGVEEgmfpsqMALDEggRLEEERRLAYVGVTRAMQKLTL 612
Cdd:COG1074  624 ERLIEDGGDEEKrrlESDADAVRIMTIHKSKGLEFPVVFLPALRE------RARAE--ELAEELRLLYVALTRARDRLVL 695

                 ....*..
gi 488972480 613 TYAETRR 619
Cdd:COG1074  696 SGAVKKK 702
UvrD_C pfam13361
UvrD-like helicase C-terminal domain; This domain is found at the C-terminus of a wide variety ...
277-617 6.33e-91

UvrD-like helicase C-terminal domain; This domain is found at the C-terminus of a wide variety of helicase enzymes. This domain has a AAA-like structural fold.


Pssm-ID: 433145 [Multi-domain]  Cd Length: 377  Bit Score: 288.92  E-value: 6.33e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  277 IRLEQNYRSTSNILSAANALIENNNGR----LGKKLWTDGADGEPISLYCAFNDLDEARFVVNRIKTWQENGGALEQCAI 352
Cdd:pfam13361   1 IHLEINYRSTKNLLKAANEFINNNFGRatiyPKKILAETVEDGEKIKIIEAETEEEEAEWIALEIKKLVARDEKYNDIAV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  353 LYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTSR- 431
Cdd:pfam13361  81 LTRSNSDADLIEEALKKLGIPYFVVGQTKFFRREEIKDILAYLRLIANKHDSISLKRILNGPKRGIGNATLERIREYKKr 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  432 -----DRQLTLWQASRELLKEKALAGR---------------------AASALQRFMELIDALAqettdmpLHVQTDRVI 485
Cdd:pfam13361 161 glrlsDFINPDTLTYGDPFVIALEQDNivvfdvettgldttedeiiqiAAIKLNKKGVVIESFE-------RFLRLKKPV 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  486 KDS----GLRAMYEQEKGEKGQT-------RIENLEELVTATRQFSYNEEDEDLM-PLQAFLSHAALEAGEGQADTWQDA 553
Cdd:pfam13361 234 GDSlqvhGFSDEFLQENGETPAEalrdfleKLENLRELYSILREYDDIEETPEPEdALRNFLEIATLSNSELEGSDIKER 313
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488972480  554 VQLMTLHSAKGLEFPQVFIVGVEEGMFPSQMALDEGGRLEEERRLAYVGVTRAMQKLTLTYAET 617
Cdd:pfam13361 314 IPIMTIHQAKGLEFDTVFLAGLEEGIFPSYRSIKDEGNLEEERRLFYVAITRAKKRLYISYSKS 377
DEXQc_UvrD cd17932
DEXQD-box helicase domain of UvrD; UvrD is a highly conserved helicase involved in mismatch ...
11-283 1.85e-86

DEXQD-box helicase domain of UvrD; UvrD is a highly conserved helicase involved in mismatch repair, nucleotide excision repair, and recombinational repair. It plays a critical role in maintaining genomic stability and facilitating DNA lesion repair in many prokaryotic species including Helicobacter pylori and Escherichia coli. UvrD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 350690 [Multi-domain]  Cd Length: 189  Bit Score: 270.16  E-value: 1.85e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  11 NDKQREAVAASRTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTTQ-GGMWVGT 89
Cdd:cd17932    1 NPEQREAVTHPDGPLLVLAGAGSGKTRVLTHRIAYLILEGGVPPERILAVTFTNKAAKEMRERLRKLLGEQLaSGVWIGT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  90 FHGLAHRLLRAHHldanlpqdfqildsedqlrllkrlikamnldekqwpprqamwyinsqkdeglrphhiqsygnpveqt 169
Cdd:cd17932   81 FHSFALRILRRYG------------------------------------------------------------------- 93
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 170 wqkvyqayqeacdraglvDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDD 249
Cdd:cd17932   94 ------------------DFDDLLLYALELLEENPDVREKLQSRFRYILVDEYQDTNPLQYELLKLLAGDGKNLFVVGDD 155
                        250       260       270
                 ....*....|....*....|....*....|....
gi 488972480 250 DQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNY 283
Cdd:cd17932  156 DQSIYGFRGADPENILDFEKDFPDAKVIKLEENY 189
SF1_C_UvrD cd18807
C-terminal helicase domain of UvrD family helicases; UvrD is a highly conserved helicase ...
285-614 1.85e-34

C-terminal helicase domain of UvrD family helicases; UvrD is a highly conserved helicase involved in mismatch repair, nucleotide excision repair, and recombinational repair. It plays a critical role in maintaining genomic stability and facilitating DNA lesion repair in many prokaryotic species including Helicobacter pylori and Escherichia coli. This family also includes ATP-dependent helicase/nuclease AddA and helicase/nuclease RecBCD subunit RecB, among others. UvrD family helicases are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.


Pssm-ID: 350194 [Multi-domain]  Cd Length: 150  Bit Score: 128.50  E-value: 1.85e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 285 STSNILSAANALIENNNGRLGKKLWTDGADGEPISLYCAFNDLDEARFVVNRIKTWQENGG-ALEQCAILYRSNAQSRVL 363
Cdd:cd18807    1 STKNILDAANSLIKQNKNRPKKPLKAGNKSGGPVELLLAKDEADEAKAIADEIKRLIESGPvQYSDIAILVRTNRQARVI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 364 EEALLqasmpyriyggmrfferqeikdalsylrlianrnddaafervvntptrgigdrtldvvrqtsrdrqltlwqasre 443
Cdd:cd18807   81 EEALR--------------------------------------------------------------------------- 85
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 444 llkekalagraasalqrfmelidalaqettdmplhvqtdrvikdsglramyeqekgekgqtrienleelvtatrqfsyne 523
Cdd:cd18807      --------------------------------------------------------------------------------
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 524 ededlmplqaflshaaleagegqadtwqdaVQLMTLHSAKGLEFPQVFIVGVEEGMFPSQMA----LDEGGRLEEERRLA 599
Cdd:cd18807   86 ------------------------------VTLMTIHASKGLEFPVVFIVGLGEGFIPSDASyhaaKEDEERLEEERRLL 135
                        330
                 ....*....|....*
gi 488972480 600 YVGVTRAMQKLTLTY 614
Cdd:cd18807  136 YVALTRAKKELYLVG 150
addA_Gpos TIGR02785
helicase-exonuclease AddAB, AddA subunit, Firmicutes type; AddAB, also called RexAB, ...
12-612 6.89e-34

helicase-exonuclease AddAB, AddA subunit, Firmicutes type; AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 274299 [Multi-domain]  Cd Length: 1230  Bit Score: 139.84  E-value: 6.89e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480    12 DKQREAVAASRTNMLVLAGAGSGKTRVLVHRI-AWLLSVENCSpySIMAVTFTNKAAAEMRHRIGQ-------------- 76
Cdd:TIGR02785    4 DEQWQAIYTRGQDILVSASAGSGKTAVLVERIiRKITRGVDVD--RLLVVTFTNAAAREMKERIAEalekelvqepnskh 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480    77 ------LMGTTQggmwVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLK-------------------------- 124
Cdd:TIGR02785   82 lrrqlaLLNTAN----ISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQLLLIKevlddvfeeeyykedkeaffelvdnf 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   125 ----------RLIKAM---------------NL------------DEKQW------------------------------ 137
Cdd:TIGR02785  158 sgdrsddglrDLILQLydfsrstpnpekwlnNLaeayevkekftiESLKLqqqikellkneleglqeklqralelfmaed 237
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   138 ---PPRQAMWYINSQKDEGLRPHHIQSYGNPV------------------------------------------------ 166
Cdd:TIGR02785  238 glaPRLENFQLDLQNIDELIQESLAQADWNELrkavaafkfknlkaakgdeedadlleeadklreeakkqleklktdyft 317
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   167 --EQTWQKVYQ------------------AYQEACDRAGLVDFAELLLRAHELWLNKPH----ILQHYRERFTNILVDEF 222
Cdd:TIGR02785  318 rsEEDHLRIMQemkpvvktlvqlvkdfieRFGAEKREKNILDFSDLEHYALQILTNENEspseAAEFYREKFHEVLVDEY 397
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   223 QDTNNIQYAWIRLLAGD---TGKVMIVGDDDQSIYGWRGAQ----VENIQRFLNDFPGA-ETIRLEQNYRSTSNILSAAN 294
Cdd:TIGR02785  398 QDTNLVQESILQLVKRGpeeEGNLFMVGDVKQSIYRFRQADpllfLEKYHRFAQEGEEHgKRIDLAENFRSRAEVLDTTN 477
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   295 -------------------------------ALIENNNGRLGKKLWTDGADGEPISLYCAFNDLD--EARFVVNRIK--- 338
Cdd:TIGR02785  478 flfkqlmdeevgeidydeeaqlkfgaakypeNPDNKTEELLYEKLLIEEAEEEEIDEEAEILDKAqqEATMVAERIKali 557
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   339 ----------TWQENGGALEQCAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFE 408
Cdd:TIGR02785  558 kegfkvydkkTGTYRPVTYRDIVILTRSRGWNLQIMEEFKKYGIPVFANDAENYFQTTEVRVMLSLLRVIDNPYQDIPLV 637
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   409 RVVNTPTRGIGDRTLDVVRQTSRDRqlTLWQASRELLKEKALAGRAASALQRFMELIDALAQETTDMPLHVQTDRVIKDS 488
Cdd:TIGR02785  638 AVLRSPIVGFDENELALIRLENKDS--SYYEAVKDYVKAGLIEDELYEKLNTFLDSLQKWREFARTHSVSELIWKIYNDT 715
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   489 GLramYEQEKG-EKGQTRIENLEELVTATRQFSYN----------------EEDEDLmplqaflshaALEAGEGQADtwq 551
Cdd:TIGR02785  716 GY---YDYVGGlPGGKQRQANLYALYERARQYESTsfkglfqfirfiermqERQKDL----------ASAVAVGEAE--- 779
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   552 DAVQLMTLHSAKGLEFPQVFIVGV-----------------------------EEGMFPS--QMALDEGGRLE---EERR 597
Cdd:TIGR02785  780 NAVRLMTIHKSKGLEFPVVFVLGMgkqfnkqdlnssylldrqlglgikyidpqERLSYPSlpKVAIKQKMKREllsEEMR 859
                          890
                   ....*....|....*
gi 488972480   598 LAYVGVTRAMQKLTL 612
Cdd:TIGR02785  860 VLYVALTRAKEKLIL 874
DExxQc_SF1-N cd17914
DEXQ-box helicase domain of superfamily 1 helicase; The superfamily (SF)1 family members ...
24-283 1.60e-28

DEXQ-box helicase domain of superfamily 1 helicase; The superfamily (SF)1 family members include UvrD/Rep, Pif1-like, and Upf-1-like proteins. Like SF2, they do not form toroidal, predominantly hexameric structures like SF3-6. Their helicase core is surrounded by C and N-terminal domains with specific functions such as nucleases, RNA or DNA binding domains or domains engaged in protein-protein interactions. SF1 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 438706 [Multi-domain]  Cd Length: 121  Bit Score: 110.27  E-value: 1.60e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  24 NMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRhrigqlmgttqggmwvgtfhglahrllrahhl 103
Cdd:cd17914    1 LSLIQGPPGTGKTRVLVKIVAALMQNKNGEPGRILLVTPTNKAAAQLD-------------------------------- 48
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 104 danlpqdfqildsedqlrllkrlikamnldekqwpprqamwyinsqkdeglrphhiqsygnpveqtwqkvyqayqeacdr 183
Cdd:cd17914      --------------------------------------------------------------------------------
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 184 aglvdfaelllrahelwlnkphilqhyrerftNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQSIYGWRGAQVEN 263
Cdd:cd17914   49 --------------------------------NILVDEAAQILEPETSRLIDLALDQGRVILVGDHDQLGPVWRGAVLAK 96
                        250       260
                 ....*....|....*....|....*
gi 488972480 264 -----IQRFLNDFPGAETIRLEQNY 283
Cdd:cd17914   97 icneqSLFTRLVRLGVSLIRLQVQY 121
addA_alphas TIGR02784
double-strand break repair helicase AddA, alphaproteobacterial type; AddAB, also called RexAB, ...
14-628 4.40e-26

double-strand break repair helicase AddA, alphaproteobacterial type; AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 274298 [Multi-domain]  Cd Length: 1135  Bit Score: 114.78  E-value: 4.40e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480    14 QREAVAAS-RTNMLVLAGAGSGKTRVLVHRIAWLLsVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT------------ 80
Cdd:TIGR02784    1 ARQAQAADpAASAWVSANAGSGKTHVLTQRVIRLL-LAGTEPSKILCLTYTKAAAAEMQNRVFKRLGEwavlddadlrar 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480    81 --------------------------TQGGMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLK---------- 124
Cdd:TIGR02784   80 lealegkrpdaaklaearrlfaraleTPGGLKIQTIHAFCEALLHQFPLEANVAGHFSVIDDRAAATLLEearrallagp 159
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   125 ---------------------------------------------------RLIKAMNLD---------EKQWP------ 138
Cdd:TIGR02784  160 aapddaladalatvleaagetgleallaeivarrdalmafldeaggegaeaRLRRALGLApgdtaedllEAVWPlpglpr 239
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   139 ------PRQAMWYINSQ------------KDEGLRPHHIQSY--------GNPVEQTW------QKVYQAYQEACDRA-- 184
Cdd:TIGR02784  240 lalaliAALLKSGGGSKdaaaalsqlreaAAEPDPVARLDLLlgafltskGEPKSASFvikkaiQKSLPDLAEALEDAas 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   185 ---------------------------------------GLVDFAELLLRAHELwLNKPHILQ--HYR-ERFTN-ILVDE 221
Cdd:TIGR02784  320 rvealrerlralrmaqrtlaalrlaarllqryarlkkarGLLDFNDLIERTVAL-LARPGAGAwvHYKlDRGIDhILVDE 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   222 FQDTNNIQYAWIRLLA-----GDTGK------VMIVGDDDQSIYGWRGAQVENIQR----FLNDFPGAET----IRLEQN 282
Cdd:TIGR02784  399 AQDTSPEQWDIIQALAeeffsGEGARsgvertIFAVGDEKQSIYSFQGADPERFAEerreFSRKVRAVGRkfedLSLNYS 478
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   283 YRSTSNILSAANALIENNNGRLG----------------------------------KKLWTDGADGEPISlyCAFNDLd 328
Cdd:TIGR02784  479 FRSTPDVLAAVDLVFADPENARGlsadsdapvheafrddlpgrvdlwdliskeegeePEDWTDPVDELGER--APEVRL- 555
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   329 eARFVVNRIKTWQENGGALE---------QCAILYRS-----NAQSRvleeALLQASMPyrIYGGMRFFERQEI--KDAL 392
Cdd:TIGR02784  556 -AERIAAEIRAWLDRGTPIPgrgravrpgDILVLVRKrdaffSALIR----ALKRRGIP--VAGADRLKLTSHIavKDLM 628
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   393 SYLRLIANRNDDAAFERVVNTPTRGIGDRtlDVVRQTSRDRQLTLWQASRellkekalagRAASALQRFMELIDALAQET 472
Cdd:TIGR02784  629 ALGRFVLQPEDDLSLAALLKSPLFGLDED--DLFRLAAGRSGGSLWAALR----------RREAEFAATLAVLRDWLSLA 696
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   473 TDMPLHVQTDRVI-KDSGLRAMYEQEKGEKGqtriENLEELVTatrqFSYNEEDEDLMPLQAFLShaALEAGE----GQA 547
Cdd:TIGR02784  697 DFLTPFEFYARLLgRDGGRRKLLARLGAEAE----DILDEFLS----QALAYERTGLPGLQAFLS--WLEADDpeikREM 766
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   548 DTWQDAVQLMTLHSAKGLEFPQVFIVGVEEGMFPSQMALD---EGGR-----------------------------LEEE 595
Cdd:TIGR02784  767 DQARDEVRVMTVHGAKGLEAPVVFLVDTGSKPFASQRAPLllaTGGSggkaplwrpasafdpslsaaarerlkeraEDEY 846
                          890       900       910
                   ....*....|....*....|....*....|...
gi 488972480   596 RRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHR 628
Cdd:TIGR02784  847 RRLLYVAMTRAEDRLIVCGYRGKRESPKDSWHA 879
recB TIGR00609
exodeoxyribonuclease V, beta subunit; The RecBCD holoenzyme is a multifunctional nuclease with ...
26-617 3.40e-25

exodeoxyribonuclease V, beta subunit; The RecBCD holoenzyme is a multifunctional nuclease with potent ATP-dependent exodeoxyribonuclease activity. Ejection of RecD, as occurs at chi recombinational hotspots, cripples exonuclease activity in favor of recombinagenic helicase activity. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273172 [Multi-domain]  Cd Length: 1087  Bit Score: 112.14  E-value: 3.40e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480    26 LVLAGAGSGKT--------RVLVHriAWLLSVENcspysIMAVTFTNKAAAEMRHRI----GQLMGTTQG---------- 83
Cdd:TIGR00609   13 LIEASAGTGKTftiaqlylRLLLE--GGPLTVEE-----ILVVTFTNAATEELKTRIrgriHQALRALKAaltsqelpep 85
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480    84 -------------------------GMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRL---------------- 122
Cdd:TIGR00609   86 lkeaiqdekvkqaitrlrnalatmdEAAIYTIHGFCQRMLEQHAFESDEIFDVELIEDESLLLAeitkdfwrrnfynlpf 165
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   123 ------LKRLIKAMNL-----------DEKQWPPRQA------MWYINSQKDEGLRPHHI--------------QSYGNP 165
Cdd:TIGR00609  166 diaqivLKTKKSPQAVltqiladlllqSYLAFPSPPLdleqliKWHEQIYKDLDKLDHAVfeeidklnaernnlFCLKDR 245
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   166 VEQTWQK-VYQAYQEACDRAGLVDFAELLLRAHELwLNKPH---ILQHYRERFTNILVDEFQDTNNIQYAWIRLL--AGD 239
Cdd:TIGR00609  246 VFLTLLKeVQEELKKEKKRRREIGFDDLLSRLETA-LKSAEgekLAQAIREQYPIALIDEFQDTDPQQYRIFSKLfiAQK 324
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   240 TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETirLEQNYRSTSNILSAANALIENN---------------NGRL 304
Cdd:TIGR00609  325 ETSLFLIGDPKQAIYSFRGADIFTYLQAKSKADARYT--LGTNWRSTPALVGSLNKLFSLIsnpflekpifipvlaHQKN 402
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   305 GK-KLWTDGADGEPISlycaFNDLDEARFVVNRIKTWQENGGALE-----QCAILYRSNAQSRVLEEALLQASMPYRIYG 378
Cdd:TIGR00609  403 SKgSFVINGQEQPPIH----FFTTEVESEGVDDYRQTIAQKCAREialwlASAALGLANFIATFGGRPLRAGDIAVLVRG 478
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   379 gmrffeRQE---IKDALSYLRLIAN--RNDDAAFE-----------RVVNTPTRgigDRTLDVVrQTSRDRQLTlWQASR 442
Cdd:TIGR00609  479 ------RKEanqIRKALKKAQIPSVylSDKSSVFAteeaqellallEALLEPEN---EGTLRAA-LASSIFGLS-ALELE 547
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   443 ELLKEKALAGRAASALQRFMELIDALAQETTDMplhvqtdRVIKDSGL-RAMYEQEKGEKGQTRIENLEELVTATRQFSY 521
Cdd:TIGR00609  548 TLNQDEITWERVVEKFREYHDIWRKIGVLAMFQ-------RLMLEKGIgERLLSQPGGERILTNLLHLAELLQEAAHQER 620
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   522 NEededLMPLQAFLSHAALE-AGEGQA---DTWQDAVQLMTLHSAKGLEFPQVFIVGVEEGMFPSQMALD---------- 587
Cdd:TIGR00609  621 NK----LSLLRWLEDQISNEeEEEEEIirlESDAELVKIVTIHKSKGLEYPIVFLPFITDAKKSNFASLHdqhsheyqly 696
                          730       740       750       760
                   ....*....|....*....|....*....|....*....|..
gi 488972480   588 ------------EGGRLEEERRLAYVGVTRAMQKLTLTYAET 617
Cdd:TIGR00609  697 dfnqseenqklaRVERLAEDLRLLYVALTRAKKQLFIGIAPL 738
AddB COG3857
ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
26-639 3.57e-25

ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];


Pssm-ID: 443066 [Multi-domain]  Cd Length: 1019  Bit Score: 111.76  E-value: 3.57e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   26 LVLAGAGSGKTRVLVHRIAwllsvENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTtqGGMW---VGTFHGLAHRLLRAHH 102
Cdd:COG3857     2 FILGRAGSGKTTYLLEEIK-----EELKEGKPIILLVPEQMTFQAERALLKRLGL--GGSIraqVLSFSRLAWRVLQETG 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  103 LDAnlpqdFQILDSEDQLRLLKRLIKAmNLDEKQWPPRQAMWY-----INSQ----KDEGLRPHHIQSYGNPVEQTWQ-- 171
Cdd:COG3857    75 GAT-----RPLLSDAGKRMLLRKILEE-HKDELKVFARAADKPgfieqLAELitelKRYGITPEDLEEAAELLKEKLRdl 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  172 -KVYQAYQEACdRAGLVDFAELLLRAHElWLNKPHILQHyrerfTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDD 250
Cdd:COG3857   149 aLIYEAYEEKL-AGRYIDSEDLLRLLAE-KLEKSEFLEG-----AEIYIDGFTDFTPQELELLEALLKKAKEVTITLTLD 221
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  251 QSIYGWRGAQVENIQRFLNDfpgAETIRLEQNYRSTSNIlsaanALIENNNGRLGKKlwtdgADGEPISLYCAFNDLDEA 330
Cdd:COG3857   222 PDELDLFSATGETYERLLEL---AKENGVEVEFKKSPEL-----AHLERNLFAYPPE-----EEPEGIEIIEAANRRAEV 288
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  331 RFVVNRIKTW-QENGGALEQCAILYRS-NAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFE 408
Cdd:COG3857   289 EAVAREIRRLvREEGYRYRDIAVVVRDlEAYAPLIERVFAEYGIPYFIDEKRPLSHHPLVELILSLLELVRSNFRYEDVF 368
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  409 RVVNTP-----TRGIGDRTLDVVR----------QTSRDRQLTLWQASRELLKE-KALAGRAASALQRFM---------- 462
Cdd:COG3857   369 RLLKTGllrplSREEIDRLENYVLaygirgrrwlERYLEEEEELTDEEEEDLERlNELRDRLLEPLLPLRerlkkaktvr 448
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  463 ELIDALAQ--ETTDMPLHVQTDRVIKDSGLRAMYEqekgEKGQTR---IENLEELVTatrqfsynEEDEDLMPLQAF--- 534
Cdd:COG3857   449 EWAEALYEflEELGVPEKLEEWREAEEAGDLEEAR----EHEQAWnalIELLDELVE--------VLGDEKLSLEEFlri 516
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  535 LSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGVEEGMFPSQM------------ALDEGG---------RLE 593
Cdd:COG3857   517 LESGLEELTFGLIPPSLDQVQVGGLDRARGLDFKAVFVLGLNEGVFPARPredgllsdeereRLNELGlelpptsreRLL 596
                         650       660       670       680
                  ....*....|....*....|....*....|....*....|....*.
gi 488972480  594 EERRLAYVGVTRAMQKLTLTYAETRRLyGKEVyhRPSRFIGELPQE 639
Cdd:COG3857   597 EERFLFYRALTRASERLYLSYPLADEE-GKAL--LPSPLIDRLREL 639
helD PRK11054
DNA helicase IV; Provisional
10-308 1.40e-22

DNA helicase IV; Provisional


Pssm-ID: 182930 [Multi-domain]  Cd Length: 684  Bit Score: 103.11  E-value: 1.40e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  10 LNDKQREAVAASRTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTTqgGMWVGT 89
Cdd:PRK11054 197 LNPSQARAVVNGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTE--DITART 274
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  90 FHGLAHRLLRAHH----------LDANLPQDFQILDSEDQLRLLKRLIKAMnldeKQWPPRQAMWYI---NSQKDEGL-- 154
Cdd:PRK11054 275 FHALALHIIQQGSkkvpviskleNDSKARHALLIAEWRKQCSEKKAQAKGW----RQWLTEELQWDVpegNFWDDEKLqr 350
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 155 -------------RPHH------IQSYGNPVEQTWQK-------VYQAYQEACDRAGLVDFAELLLRAHELwLNKphilq 208
Cdd:PRK11054 351 rlasrlerwvslmRMHGgsqaemIAQAPEEVRDLFQKrlklmapLLKAWKKALKAENAVDFSGLIHQAVNY-LEK----- 424
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 209 hyrERFTN----ILVDEFQDtnnIQYAWIRLLAGDTGK-----VMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRL 279
Cdd:PRK11054 425 ---GRFISpwkhILVDEFQD---ISPQRAALLAALRKQnsqttLFAVGDDWQAIYRFSGADLSLTTAFHERFGEGDRCHL 498
                        330       340
                 ....*....|....*....|....*....
gi 488972480 280 EQNYRSTSNILSAANALIENNNGRLGKKL 308
Cdd:PRK11054 499 DTTYRFNSRIGEVANRFIQQNPHQLKKPL 527
AAA_19 pfam13245
AAA domain;
14-139 7.19e-19

AAA domain;


Pssm-ID: 433059 [Multi-domain]  Cd Length: 136  Bit Score: 83.42  E-value: 7.19e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480   14 QREAV--AASRTNMLVLAGAGSGKTRVLVHRIAWLLSVeNCSPYSIMAVTFTNKAAAEMRHRIGQ-------LMGTTQGG 84
Cdd:pfam13245   1 QREAVrtALPSKVVLLTGGPGTGKTTTIRHIVALLVAL-GGVSFPILLAAPTGRAAKRLSERTGLpastihrLLGFDDLE 79
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 488972480   85 MwvGTFHGLAHRLLRAHHLdanLPQDFQILDSEDQLRLLKRLIKAMNL----DEKQWPP 139
Cdd:pfam13245  80 A--GGFLRDEEEPLDGDLL---IVDEFSMVDLPLAYRLLKALPDGAQLllvgDPDQLPS 133
PRK13909 PRK13909
RecB-like helicase;
29-300 2.21e-18

RecB-like helicase;


Pssm-ID: 237554 [Multi-domain]  Cd Length: 910  Bit Score: 90.03  E-value: 2.21e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  29 AGAGSGKTRVLVHR-IAWLLSVENcsPYSIMAVTFTNKAAAEMRHRI----------------GQLMGTT---------- 81
Cdd:PRK13909   5 ASAGSGKTFALSVRfLALLFKGAN--PSEILALTFTKKAANEMKERIidtllnlekekeeselNELEEKLglskeellnk 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  82 ---------QGGMWVGTFHGLAHRLLRAHHLDANLPQDFQIlDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINS---- 148
Cdd:PRK13909  83 rdkvyqeflNSELKISTIDAFFQKILRKFCLNLGLSPDFSI-KEDTKEELNEKFLSALSKEELLELLAFIKQCESKknns 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 149 ---------QKDEGLRphHIQSYGNPVEQTWQKV----------YQAYQEACDRAG-LVDF--AELLLRAHELWLNK--- 203
Cdd:PRK13909 162 ffelleklyEKNNELK--LFEKAKNPIEFDEEKFleelrslkqqIQSIETASKNAKkAFKKedFEELLNSSKTWLEKese 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 204 --------------------------------------PHILQHYRE--------------------------------- 212
Cdd:PRK13909 240 yryfkklyneeldaefeelknalkryydakenyklsklFKLLQLYKEaknelnkkknaldfddiskkvyellgeeeidkd 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 213 --------RFTNILVDEFQDTNNIQYAWIR-----LLAG----DTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFpGAE 275
Cdd:PRK13909 320 flyfrldsKISHILIDEFQDTSVLQYKILLplideIKSGegqkKFRSFFYVGDVKQSIYRFRGGKKELFDKVSKDF-KQK 398
                        410       420
                 ....*....|....*....|....*
gi 488972480 276 TIRLEQNYRSTSNILSAANALIENN 300
Cdd:PRK13909 399 VDNLDTNYRSAPLIVDFVNEVFKKK 423
DEAD-like_helicase_N cd17912
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase ...
24-70 3.74e-10

N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase superfamily is a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. The N-terminal domain contains the ATP-binding region.


Pssm-ID: 350670 [Multi-domain]  Cd Length: 81  Bit Score: 56.76  E-value: 3.74e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 488972480  24 NMLVLAGAGSGKTRVLVHRIAWLLSvencSPYSIMAVTFTNKAAAEM 70
Cdd:cd17912    1 NILHLGPTGSGKTLVAIQKIASAMS----SGKSVLVVTPTKLLAHEI 43
COG3972 COG3972
Superfamily I DNA and RNA helicases [Replication, recombination and repair];
12-370 4.21e-10

Superfamily I DNA and RNA helicases [Replication, recombination and repair];


Pssm-ID: 443172 [Multi-domain]  Cd Length: 565  Bit Score: 62.93  E-value: 4.21e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  12 DKQREAVAASRT--NMLVLAGAGSGKTRVLVHRIAWLLSVENCSPysiMAVTFTNKA-AAEMRHRIGQ-LMGTTQGGMW- 86
Cdd:COG3972  161 DLQQERIARSIPdgPQRIRGVAGSGKTVLLAAKAAYLALKHPGWR---ILVTCFNRSlADHLRDLIPRfLRRFSNGEPEd 237
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  87 ---VGTFHGLAHRLLRAHHLDanlpqdfqildsedqlrllkrlikamnldekqwPPRQamwyinSQKDEglrphhiqsyg 163
Cdd:COG3972  238 nvkLIVFHAWGGKLLKQYGIP---------------------------------PLTF------SQPNE----------- 267
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 164 npveqtwqkvyqAYQEACDRaglvdfaelLLRAhelwLNKPHILQHYRErftnILVDEFQDTNNIqyaWIRL----LAGD 239
Cdd:COG3972  268 ------------AFDEACKA---------LLEA----IQGEIIPPIYDA----ILIDEAQDFEPE---FLRLlyqlLKPP 315
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 240 TGKVMIVGDDDQSIYG---WRGAQVENIQRflndfpgaETIRLEQNYRSTSNILSAANALI---------------ENNN 301
Cdd:COG3972  316 KKRLIWAYDEAQNIYGrkiPSAGGIPAGIG--------RDTILKKNYRNTRPILTFAHAFGmgllrppgllqgdaeDYEV 387
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488972480 302 GRLGKK------LWTDGADGEPISLYCAFNDLDEARFVVNRIKTW-QENGGALEQCAILYRSNAQSRVLEEALLQA 370
Cdd:COG3972  388 ERPGDKvtlirpPEPAGRKGPLPEFKKYDDRAEELEAIAEEIKKNlRDEGLRPSDIAVIYLGNNEAKELGDRLAAA 463
SF1_C cd18786
C-terminal helicase domain of superfamily 1 DEAD/H-box helicases; Superfamily (SF)1 family ...
552-613 2.38e-09

C-terminal helicase domain of superfamily 1 DEAD/H-box helicases; Superfamily (SF)1 family members include UvrD/Rep, Pif1-like, and Upf-1-like proteins. Similar to SF2 helicases, they do not form toroidal, predominantly hexameric structures like SF3-6. SF1 helicases are a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Their helicase core is surrounded by C- and N-terminal domains with specific functions such as nucleases, RNA or DNA binding domains, or domains engaged in protein-protein interactions. The core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.


Pssm-ID: 350173 [Multi-domain]  Cd Length: 89  Bit Score: 54.75  E-value: 2.38e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488972480 552 DAVQLMTLHSAKGLEFPQVFIVGVEEGMfpsqmaldeggrleEERRLAYVGVTRAMQKLTLT 613
Cdd:cd18786   41 QLVGAITIDSSQGLTFDVVTLYLPTANS--------------LTPRRLYVALTRARKRLVIY 88
HelD COG3973
DNA helicase IV [Replication, recombination and repair];
213-367 3.97e-09

DNA helicase IV [Replication, recombination and repair];


Pssm-ID: 443173 [Multi-domain]  Cd Length: 699  Bit Score: 59.88  E-value: 3.97e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 213 RFTNILVDEFQDTNNIQYAWIRLLaGDTGKVMIVGDDDQSIYGWRGAqvENIQRFLNDFPG--AETIRLEQNYRSTSNIL 290
Cdd:COG3973  469 TYGHVVVDEAQDLSPMQWRVLKRR-FPSASFTIVGDLAQAIHPYRGA--ESWEEVLEPLGGdrARLVELTKSYRSTAEIM 545
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 291 SAANALIENNNG---------RLGKKLWTDGADGEPislycafnDLDEArfVVNRIKTWQENGGalEQCAILYRSNAQSR 361
Cdd:COG3973  546 EFANRVLRAAGPdlpppesvrRHGEPPRVVRVPSEA--------ELAAA--VVEAVRELLAEGE--GTIAVICKTAREAE 613

                 ....*.
gi 488972480 362 VLEEAL 367
Cdd:COG3973  614 ALYAAL 619
UvrD_C_2 pfam13538
UvrD-like helicase C-terminal domain; This domain is found at the C-terminus of a wide variety ...
557-613 8.73e-08

UvrD-like helicase C-terminal domain; This domain is found at the C-terminus of a wide variety of helicase enzymes. This domain has a AAA-like structural fold.


Pssm-ID: 463913 [Multi-domain]  Cd Length: 52  Bit Score: 49.11  E-value: 8.73e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 488972480  557 MTLHSAKGLEFPQVFIVGVEegmfpsqmaLDEGGRLEEERRLAYVGVTRAMQKLTLT 613
Cdd:pfam13538   5 LTVHKAQGSEFPAVFLVDPD---------LTAHYHSMLRRRLLYTAVTRARKKLVLV 52
HelD COG3973
DNA helicase IV [Replication, recombination and repair];
537-617 7.26e-07

DNA helicase IV [Replication, recombination and repair];


Pssm-ID: 443173 [Multi-domain]  Cd Length: 699  Bit Score: 52.56  E-value: 7.26e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480 537 HAALEAGEG------QADTWQDAVQLMTLHSAKGLEFPQVFIVGVEEgmfpsqmaldEGGRLEEERRLAYVGVTRAMQKL 610
Cdd:COG3973  616 YAALKAGLPvtliddESEELEAGVVVLPAYLAKGLEFDAVVVVDPDE----------IVYESPRGRRLLYVALTRATHRL 685

                 ....*..
gi 488972480 611 TLTYAET 617
Cdd:COG3973  686 TVLHTGE 692
recB PRK10876
exonuclease V subunit beta; Provisional
211-606 1.61e-06

exonuclease V subunit beta; Provisional


Pssm-ID: 236784 [Multi-domain]  Cd Length: 1181  Bit Score: 51.90  E-value: 1.61e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  211 RERFTNILVDEFQDTNNIQYAWIRLLAG---DTGKVMIvGDDDQSIYGWRGAQVENIQRFLNDFPGAETirLEQNYRSTS 287
Cdd:PRK10876  375 RTRYPVAMIDEFQDTDPQQYRIFRRIYRhqpETALLLI-GDPKQAIYAFRGADIFTYMKARSEVSAHYT--LDTNWRSAP 451
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  288 NILSAANALI--------------------ENNNGRL----GKK-----LWTDGADGEPISLYCAFndldEARFVVNRIK 338
Cdd:PRK10876  452 GMVNSVNKLFsqtddpflfreipfipvkaaGKNQALRfvvkGETqpamkFWLMEGEGVGVGDYQQT----MAQQCAAQIR 527
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  339 TWQENGGalEQCAILYRSNAQSRVleeallQASmpyRIYGGMRffERQE---IKDALSYLRL----IANRndDAAFErvv 411
Cdd:PRK10876  528 DWLQAGQ--RGEALLMNGDDSRPV------RAS---DITVLVR--SRQEaalIRDALTLLAIpsvyLSNR--DSVFE--- 589
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  412 ntptrgigdrtldvvrqTSRDRQLtLW--QASRELLKEKALAGRAASALqrfMEL----IDALAQETTdmplhvQTDRVI 485
Cdd:PRK10876  590 -----------------TLEAQEM-LWllQAVLAPERERTLRSALATSM---MGLdaldIDALNNDER------AWDALV 642
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  486 KD-SGLRAMYeQEKGEkgqtrIENLEELVTAtRQFSYN----EEDE----DLMPLQAFLSHAALEAG------------- 543
Cdd:PRK10876  643 EEfDGYRQIW-RKRGV-----LPMLRALMSA-RNIAENllatAGGErrltDILHIGELLQEASSQLDsehalvrwlaqqi 715
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  544 ---EGQADTWQ-------DAVQLMTLHSAKGLEFPQV---FIVG--VEEGMF----------------PSQMALDEGGRL 592
Cdd:PRK10876  716 lepDSQASSQQlrlesdkHLVQIVTIHKSKGLEYPLVwlpFITNfrVQDQAFyhdrhsfeavldlnaaEESVALAEEERL 795
                         490
                  ....*....|....
gi 488972480  593 EEERRLAYVGVTRA 606
Cdd:PRK10876  796 AEDLRLLYVALTRS 809
DEAD-like_helicase_N cd17912
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase ...
202-249 2.08e-06

N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase superfamily is a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. The N-terminal domain contains the ATP-binding region.


Pssm-ID: 350670 [Multi-domain]  Cd Length: 81  Bit Score: 45.97  E-value: 2.08e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 488972480 202 NKPHILQHYrerftnILVDEFQDTNNIQYAW----IRLLAGDTGKVMIVGDD 249
Cdd:cd17912   36 TKLLAHEIL------IVIDEIQ*ILDPAAGWawatRALLGLKAEKVIGVGAT 81
RecD COG0507
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ...
10-76 2.53e-05

ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];


Pssm-ID: 440273 [Multi-domain]  Cd Length: 514  Bit Score: 47.28  E-value: 2.53e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  10 LNDKQREAVAA---SRTNMLVLAGAGSGKTRvLVHRIAWLLSVENcspYSIMAVTFTNKAAAEMRHRIGQ 76
Cdd:COG0507  125 LSDEQREAVALaltTRRVSVLTGGAGTGKTT-TLRALLAALEALG---LRVALAAPTGKAAKRLSESTGI 190
SF1_C_RecD cd18809
C-terminal helicase domain of RecD family helicases; RecD is a member of the RecBCD (EC 3.1.11. ...
544-612 7.76e-05

C-terminal helicase domain of RecD family helicases; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD family helicases are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.


Pssm-ID: 350196 [Multi-domain]  Cd Length: 80  Bit Score: 41.39  E-value: 7.76e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488972480 544 EGQADTWQDAVQL--MTLHSAKGLEFPQVFIVgveegmfpsqmaLDEGGRLEEeRRLAYVGVTRAMQKLTL 612
Cdd:cd18809   21 KGGVDALNERLQAyaMTIHKSQGSEFDRVIVV------------LPTSHPMLS-RGLLYTALTRARKLLTL 78
RecD COG0507
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ...
557-634 5.20e-04

ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];


Pssm-ID: 440273 [Multi-domain]  Cd Length: 514  Bit Score: 43.04  E-value: 5.20e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488972480 557 MTLHSAKGLEFPQVFIVgveegmfpsqmaLDEGGRLEEERRLAYVGVTRAMQKLTLTYaeTRRLYGKEVYHRPSRFIG 634
Cdd:COG0507  445 ITVHKSQGSTFDRVILV------------LPSEHSPLLSRELLYTALTRARELLTLVG--DRDALARAVRRDTARATG 508
AAA_30 pfam13604
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ...
9-75 5.64e-03

AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. There is a Walker A and Walker B.


Pssm-ID: 433343 [Multi-domain]  Cd Length: 191  Bit Score: 38.70  E-value: 5.64e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488972480    9 SLNDKQREAVAASRTN----MLVLAGAGSGKTRVLVH-RIAWllsveNCSPYSIMAVTFTNKAAAEMRHRIG 75
Cdd:pfam13604   1 TLNAEQAAAVRALLTSgdrvAVLVGPAGTGKTTALKAlREAW-----EAAGYRVIGLAPTGRAAKVLGEELG 67
DEXSc_RecD-like cd17933
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ...
13-139 8.56e-03

DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 350691 [Multi-domain]  Cd Length: 155  Bit Score: 37.53  E-value: 8.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488972480  13 KQREAV-AASRTNMLVLAG-AGSGKTRVLVhRIAWLLSVENcspYSIMAVTFTNKAAAEMRHRIGQLMGTTqggmwvgtf 90
Cdd:cd17933    1 EQKAAVrLVLRNRVSVLTGgAGTGKTTTLK-ALLAALEAEG---KRVVLAAPTGKAAKRLSESTGIEASTI--------- 67
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488972480  91 hglaHRLLRA-------HHLDAN-LPQDFQILDsE----DqLRLLKRLIKAMNL--------DEKQWPP 139
Cdd:cd17933   68 ----HRLLGInpggggfYYNEENpLDADLLIVD-EasmvD-TRLMAALLSAIPAgarlilvgDPDQLPS 130
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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