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Conserved domains on  [gi|488923017|ref|WP_002834092|]
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MULTISPECIES: PspC domain-containing protein [Pediococcus]

Protein Classification

PspC domain-containing protein( domain architecture ID 10005046)

PspC domain-containing protein similar to Escherichia coli envelope stress response membrane protein PspC that is involved in transcription regulation; the pspC gene is part of phage shock protein (psp) operon that may play a role in the competition for survival under nutrient- or energy-limited conditions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PspC COG1983
Phage shock protein PspC (stress-responsive transcriptional regulator) [Transcription, Signal ...
 4-63 1.50e-17

Phage shock protein PspC (stress-responsive transcriptional regulator) [Transcription, Signal transduction mechanisms];


:

Pssm-ID: 441586 [Multi-domain]  Cd Length: 65  Bit Score: 70.18  E-value: 1.50e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488923017   4 KTKFAKS-NDRLITGVSGGIAEYFGWSKALTRVIMLMLMLVShGLLLIPYIILAWLMPSKP 63
Cdd:COG1983    1 RKKLYRSrDDRVIAGVCAGLAEYFGIDPTLVRLIFVLLTLFG-GAGILLYLILWLLLPEAP 60
 
Name Accession Description Interval E-value
PspC COG1983
Phage shock protein PspC (stress-responsive transcriptional regulator) [Transcription, Signal ...
 4-63 1.50e-17

Phage shock protein PspC (stress-responsive transcriptional regulator) [Transcription, Signal transduction mechanisms];


Pssm-ID: 441586 [Multi-domain]  Cd Length: 65  Bit Score: 70.18  E-value: 1.50e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488923017   4 KTKFAKS-NDRLITGVSGGIAEYFGWSKALTRVIMLMLMLVShGLLLIPYIILAWLMPSKP 63
Cdd:COG1983    1 RKKLYRSrDDRVIAGVCAGLAEYFGIDPTLVRLIFVLLTLFG-GAGILLYLILWLLLPEAP 60
PspC pfam04024
PspC domain; This family includes Phage shock protein C (PspC) that is thought to be a ...
 10-61 3.37e-17

PspC domain; This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.


Pssm-ID: 461134  Cd Length: 57  Bit Score: 68.99  E-value: 3.37e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 488923017   10 SNDRLITGVSGGIAEYFGWSKALTRVIMLMLMLVSHGLLLIpYIILAWLMPS 61
Cdd:pfam04024   7 RDDRMIAGVCGGLAEYFGIDPTLVRLLFVLLALFGGGGILL-YIILWLLIPE 57
phageshock_pspC TIGR02978
phage shock protein C; All members of this protein family are the phage shock protein PspC. ...
 15-66 3.06e-11

phage shock protein C; All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects. [Cellular processes, Adaptations to atypical conditions]


Pssm-ID: 132023  Cd Length: 121  Bit Score: 55.33  E-value: 3.06e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 488923017   15 ITGVSGGIAEYFGWSKALTRVIMLMLMLVSHGLL-LIPYIILAWLMPSKPIES 66
Cdd:TIGR02978  13 IAGVCAGLADYFGVEVWLVRILVVSALLFGGGFFvLVAYIALWLLLDKKPINL 65
PRK10697 PRK10697
envelope stress response membrane protein PspC;
15-69 4.46e-05

envelope stress response membrane protein PspC;


Pssm-ID: 182656  Cd Length: 118  Bit Score: 39.16  E-value: 4.46e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 488923017  15 ITGVSGGIAEYFGWSKALTRVIMLMLMLVshGLL---LIPYIILAWLMPSKPIESNQG 69
Cdd:PRK10697  18 VKGVCAGIAHYFDVPVKLVRIIVVLSIFF--GLFvftLVAYIILSFALDPMPDNMAFG 73
 
Name Accession Description Interval E-value
PspC COG1983
Phage shock protein PspC (stress-responsive transcriptional regulator) [Transcription, Signal ...
 4-63 1.50e-17

Phage shock protein PspC (stress-responsive transcriptional regulator) [Transcription, Signal transduction mechanisms];


Pssm-ID: 441586 [Multi-domain]  Cd Length: 65  Bit Score: 70.18  E-value: 1.50e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488923017   4 KTKFAKS-NDRLITGVSGGIAEYFGWSKALTRVIMLMLMLVShGLLLIPYIILAWLMPSKP 63
Cdd:COG1983    1 RKKLYRSrDDRVIAGVCAGLAEYFGIDPTLVRLIFVLLTLFG-GAGILLYLILWLLLPEAP 60
PspC pfam04024
PspC domain; This family includes Phage shock protein C (PspC) that is thought to be a ...
 10-61 3.37e-17

PspC domain; This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.


Pssm-ID: 461134  Cd Length: 57  Bit Score: 68.99  E-value: 3.37e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 488923017   10 SNDRLITGVSGGIAEYFGWSKALTRVIMLMLMLVSHGLLLIpYIILAWLMPS 61
Cdd:pfam04024   7 RDDRMIAGVCGGLAEYFGIDPTLVRLLFVLLALFGGGGILL-YIILWLLIPE 57
phageshock_pspC TIGR02978
phage shock protein C; All members of this protein family are the phage shock protein PspC. ...
 15-66 3.06e-11

phage shock protein C; All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects. [Cellular processes, Adaptations to atypical conditions]


Pssm-ID: 132023  Cd Length: 121  Bit Score: 55.33  E-value: 3.06e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 488923017   15 ITGVSGGIAEYFGWSKALTRVIMLMLMLVSHGLL-LIPYIILAWLMPSKPIES 66
Cdd:TIGR02978  13 IAGVCAGLADYFGVEVWLVRILVVSALLFGGGFFvLVAYIALWLLLDKKPINL 65
PRK10697 PRK10697
envelope stress response membrane protein PspC;
15-69 4.46e-05

envelope stress response membrane protein PspC;


Pssm-ID: 182656  Cd Length: 118  Bit Score: 39.16  E-value: 4.46e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 488923017  15 ITGVSGGIAEYFGWSKALTRVIMLMLMLVshGLL---LIPYIILAWLMPSKPIESNQG 69
Cdd:PRK10697  18 VKGVCAGIAHYFDVPVKLVRIIVVLSIFF--GLFvftLVAYIILSFALDPMPDNMAFG 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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