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Conserved domains on  [gi|488913770|ref|WP_002824845|]
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MULTISPECIES: polymer-forming cytoskeletal protein [Campylobacter]

Protein Classification

bactofilin family protein( domain architecture ID 10004140)

bactofilin family protein is a polymer-forming cytoskeletal protein such as Thermus thermophilus bactofilin that forms constitutive filaments that polymerize through end-to-end association of the beta-helical domains

PubMed:  19959992|22092065|31501539
SCOP:  4004853

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CcmA COG1664
Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];
9-123 1.74e-29

Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];


:

Pssm-ID: 441270 [Multi-domain]  Cd Length: 129  Bit Score: 103.44  E-value: 1.74e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488913770   9 NSTALSSSSETTVISSGARIEGKFYFSSMLHVDGELNGIVHSESIVVIGKNGNLKGELKADKIVVNGCFEGDLEA-DSLE 87
Cdd:COG1664    4 KKSAAESEGITTVIGEGTTIKGDITSEGDLRIDGTVEGDITAEGTLVIGEGGVVEGDIEADNVVINGTVEGNITAsEKLE 83

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 488913770  88 ILAGGVVGGNISIKDLAIENGGRFNGTSKIKQEEPV 123
Cdd:COG1664   84 LLSTARVEGDITAGSLEIEEGAVFEGKCEMGEDEAA 119
 
Name Accession Description Interval E-value
CcmA COG1664
Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];
9-123 1.74e-29

Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];


Pssm-ID: 441270 [Multi-domain]  Cd Length: 129  Bit Score: 103.44  E-value: 1.74e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488913770   9 NSTALSSSSETTVISSGARIEGKFYFSSMLHVDGELNGIVHSESIVVIGKNGNLKGELKADKIVVNGCFEGDLEA-DSLE 87
Cdd:COG1664    4 KKSAAESEGITTVIGEGTTIKGDITSEGDLRIDGTVEGDITAEGTLVIGEGGVVEGDIEADNVVINGTVEGNITAsEKLE 83

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 488913770  88 ILAGGVVGGNISIKDLAIENGGRFNGTSKIKQEEPV 123
Cdd:COG1664   84 LLSTARVEGDITAGSLEIEEGAVFEGKCEMGEDEAA 119
Bactofilin pfam04519
Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of ...
 28-115 9.76e-23

Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.


Pssm-ID: 461340 [Multi-domain]  Cd Length: 89  Bit Score: 84.78  E-value: 9.76e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488913770   28 IEGKFYFSSMLHVDGELNGIVHSESIVVIGKNGNLKGELKADKIVVNGCFEGDLEA-DSLEILAGGVVGGNISIKDLAIE 106
Cdd:pfam04519   1 IEGDISFEGDLRIDGKVEGNITSKGTLVIGEGGRVEGDIKAESVVIAGTVEGNITAsEKLELLSTARVEGDIKTGSLEIE 80


                  ....*....
gi 488913770  107 NGGRFNGTS 115
Cdd:pfam04519  81 EGAVFEGRC 89
 
Name Accession Description Interval E-value
CcmA COG1664
Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];
9-123 1.74e-29

Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];


Pssm-ID: 441270 [Multi-domain]  Cd Length: 129  Bit Score: 103.44  E-value: 1.74e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488913770   9 NSTALSSSSETTVISSGARIEGKFYFSSMLHVDGELNGIVHSESIVVIGKNGNLKGELKADKIVVNGCFEGDLEA-DSLE 87
Cdd:COG1664    4 KKSAAESEGITTVIGEGTTIKGDITSEGDLRIDGTVEGDITAEGTLVIGEGGVVEGDIEADNVVINGTVEGNITAsEKLE 83

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 488913770  88 ILAGGVVGGNISIKDLAIENGGRFNGTSKIKQEEPV 123
Cdd:COG1664   84 LLSTARVEGDITAGSLEIEEGAVFEGKCEMGEDEAA 119
Bactofilin pfam04519
Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of ...
 28-115 9.76e-23

Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.


Pssm-ID: 461340 [Multi-domain]  Cd Length: 89  Bit Score: 84.78  E-value: 9.76e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488913770   28 IEGKFYFSSMLHVDGELNGIVHSESIVVIGKNGNLKGELKADKIVVNGCFEGDLEA-DSLEILAGGVVGGNISIKDLAIE 106
Cdd:pfam04519   1 IEGDISFEGDLRIDGKVEGNITSKGTLVIGEGGRVEGDIKAESVVIAGTVEGNITAsEKLELLSTARVEGDIKTGSLEIE 80


                  ....*....
gi 488913770  107 NGGRFNGTS 115
Cdd:pfam04519  81 EGAVFEGRC 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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