NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|488474653|ref|WP_002518323|]
View 

lactococcin 972 family bacteriocin [Cutibacterium acnes]

Protein Classification

lactococcin 972 family bacteriocin( domain architecture ID 10560468)

lactococcin 972 family bacteriocin similar to Listeria monocytogenes bacteriocin, Lmo2776, which limits Listeria intestinal colonization

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Lactococcin_972 pfam09683
Bacteriocin (Lactococcin_972); These sequences represent bacteriocins related to lactococcin. ...
 34-90 5.68e-17

Bacteriocin (Lactococcin_972); These sequences represent bacteriocins related to lactococcin. Members tend to be found in association with a seven transmembrane putative immunity protein.


:

Pssm-ID: 430750  Cd Length: 62  Bit Score: 68.16  E-value: 5.68e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488474653  34 EGGVWRYGRG------YSDYLHGSKKHGSSVQGVNFVRSPCvKAGSWSYARTDAAWFGNKAWY 90
Cdd:pfam09683  1 GGGTWEYGVGsaggyvYSNYLHPTKCHGSTVVGTRTVKSRA-PAGKWSRASAPNAWANNQAYW 62
 
Name Accession Description Interval E-value
Lactococcin_972 pfam09683
Bacteriocin (Lactococcin_972); These sequences represent bacteriocins related to lactococcin. ...
 34-90 5.68e-17

Bacteriocin (Lactococcin_972); These sequences represent bacteriocins related to lactococcin. Members tend to be found in association with a seven transmembrane putative immunity protein.


Pssm-ID: 430750  Cd Length: 62  Bit Score: 68.16  E-value: 5.68e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488474653  34 EGGVWRYGRG------YSDYLHGSKKHGSSVQGVNFVRSPCvKAGSWSYARTDAAWFGNKAWY 90
Cdd:pfam09683  1 GGGTWEYGVGsaggyvYSNYLHPTKCHGSTVVGTRTVKSRA-PAGKWSRASAPNAWANNQAYW 62
 
Name Accession Description Interval E-value
Lactococcin_972 pfam09683
Bacteriocin (Lactococcin_972); These sequences represent bacteriocins related to lactococcin. ...
 34-90 5.68e-17

Bacteriocin (Lactococcin_972); These sequences represent bacteriocins related to lactococcin. Members tend to be found in association with a seven transmembrane putative immunity protein.


Pssm-ID: 430750  Cd Length: 62  Bit Score: 68.16  E-value: 5.68e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488474653  34 EGGVWRYGRG------YSDYLHGSKKHGSSVQGVNFVRSPCvKAGSWSYARTDAAWFGNKAWY 90
Cdd:pfam09683  1 GGGTWEYGVGsaggyvYSNYLHPTKCHGSTVVGTRTVKSRA-PAGKWSRASAPNAWANNQAYW 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH