transglycosylase family protein [Staphylococcus epidermidis]
Protein Classification
lysozyme family protein( domain architecture ID 63)
lysozyme family protein
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| Lyz-like super family | cl00222 | lysozyme-like domains; This family contains several members, including soluble lytic ... |
176-234 | 7.87e-06 | ||
lysozyme-like domains; This family contains several members, including soluble lytic transglycosylases (SLT), goose egg-white lysozymes (GEWL), hen egg-white lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, chitosanases, and pesticin. Typical members are involved in the hydrolysis of beta-1,4- linked polysaccharides. The actual alignment was detected with superfamily member cd13925: Pssm-ID: 469668 [Multi-domain] Cd Length: 71 Bit Score: 42.75 E-value: 7.87e-06
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| Name | Accession | Description | Interval | E-value | ||
| RPF | cd13925 | core lysozyme-like domain of resuscitation-promoting factor proteins; Resuscitation-promoting ... |
176-234 | 7.87e-06 | ||
core lysozyme-like domain of resuscitation-promoting factor proteins; Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF. Pssm-ID: 381607 [Multi-domain] Cd Length: 71 Bit Score: 42.75 E-value: 7.87e-06
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| Name | Accession | Description | Interval | E-value | ||
| RPF | cd13925 | core lysozyme-like domain of resuscitation-promoting factor proteins; Resuscitation-promoting ... |
176-234 | 7.87e-06 | ||
core lysozyme-like domain of resuscitation-promoting factor proteins; Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF. Pssm-ID: 381607 [Multi-domain] Cd Length: 71 Bit Score: 42.75 E-value: 7.87e-06
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| LT-like | cd00254 | lytic transglycosylase(LT)-like domain; Members include the soluble and insoluble ... |
181-210 | 2.06e-03 | ||
lytic transglycosylase(LT)-like domain; Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Pssm-ID: 381594 [Multi-domain] Cd Length: 111 Bit Score: 36.81 E-value: 2.06e-03
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