NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|488409180|ref|WP_002478565|]
View 

MULTISPECIES: APC family permease [Staphylococcus]

Protein Classification

APC family permease( domain architecture ID 11425014)

APC (amino acid/polyamine/organocation) family permease is involved in the uptake of a specific amino acid and/or polyamine substrate with the concomitant import of a proton

Gene Ontology:  GO:0016020|GO:0055085|GO:0022857|GO:0015171|GO:0006865
PubMed:  23177982|24038584|25043943|10931886
SCOP:  4006243
TCDB:  2.A.3.1|2.A.3

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PotE COG0531
Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];
18-477 1.18e-89

Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];


:

Pssm-ID: 440297 [Multi-domain]  Cd Length: 438  Bit Score: 280.63  E-value: 1.18e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  18 QNKDGHLKRTLRVRDFLALGVGTIVSTSIFTLPGIVAAeHAGPAVALSFLIAAIVAGLVAFTYAEMSSAMPFAGSAYSWV 97
Cdd:COG0531    3 RGESSELKRKLGLFDLVALGVGAIIGAGIFVLPGLAAG-LAGPAAILAWLIAGLLALLVALSYAELASAFPRAGGAYTYA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  98 NVLFGEFFGWVAGWALLAEYFIAVAFVASGFSANLRGLISPLGIKLPTSLsapfganggiidiiaavVIILTALLLSRGM 177
Cdd:COG0531   82 RRALGPLLGFLAGWALLLSYVLAVAAVAVAFGGYLSSLFPAGGSVLIALV-----------------LILLLTLLNLRGV 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 178 TEAARIENILVVLKIFAILLFVVVGLTALHVQNYIPFIPehkvtdtgDFGGWQGVYAGVSMIFLAYIGFDSIAANSAEAI 257
Cdd:COG0531  145 KESAKVNNILTVLKLLVLLLFIVVGLFAFDPANFTPFLP--------AGGGLSGVLAALALAFFAFTGFEAIANLAEEAK 216

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 258 NPSKTMPRGILGSLVVAIILFVAVALVLVGMFHYSQYANNAEPVGWALRQSGHGVVAAIVQGISVIGMFTALIGMMLAGS 337
Cdd:COG0531  217 NPKRNIPRAIILSLLIVGVLYILVSLALTGVVPYDELAASGAPLADAAEAVFGPWGAILIALGALLSLLGALNASILGAS 296

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 338 RLLYSFGRDGLLPSWLAKLNHKH-LPNRSLIILTIIVVIIGSMF--PFAFLAQLISAGSLVAFMFVSIAMYRLRKREGNd 414
Cdd:COG0531  297 RLLYAMARDGLLPKVFAKVHPRFgTPVNAILLTGVIALLLLLLGaaSFTALASLASVGVLLAYLLVALAVIVLRRRRPD- 375

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488409180 415 lPVPGFKVPLyPVLPAITFVLVFLVFWGLSYEAKLYTLIWFVVGIVIYLFYGVRHSKKNEEPE 477
Cdd:COG0531  376 -LPRPFRVPL-PLIPILGILLCLFLLYLLGPGALLIGLVLLAIGLLLYLLYRRRHPKLLKEAE 436
 
Name Accession Description Interval E-value
PotE COG0531
Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];
18-477 1.18e-89

Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];


Pssm-ID: 440297 [Multi-domain]  Cd Length: 438  Bit Score: 280.63  E-value: 1.18e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  18 QNKDGHLKRTLRVRDFLALGVGTIVSTSIFTLPGIVAAeHAGPAVALSFLIAAIVAGLVAFTYAEMSSAMPFAGSAYSWV 97
Cdd:COG0531    3 RGESSELKRKLGLFDLVALGVGAIIGAGIFVLPGLAAG-LAGPAAILAWLIAGLLALLVALSYAELASAFPRAGGAYTYA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  98 NVLFGEFFGWVAGWALLAEYFIAVAFVASGFSANLRGLISPLGIKLPTSLsapfganggiidiiaavVIILTALLLSRGM 177
Cdd:COG0531   82 RRALGPLLGFLAGWALLLSYVLAVAAVAVAFGGYLSSLFPAGGSVLIALV-----------------LILLLTLLNLRGV 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 178 TEAARIENILVVLKIFAILLFVVVGLTALHVQNYIPFIPehkvtdtgDFGGWQGVYAGVSMIFLAYIGFDSIAANSAEAI 257
Cdd:COG0531  145 KESAKVNNILTVLKLLVLLLFIVVGLFAFDPANFTPFLP--------AGGGLSGVLAALALAFFAFTGFEAIANLAEEAK 216

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 258 NPSKTMPRGILGSLVVAIILFVAVALVLVGMFHYSQYANNAEPVGWALRQSGHGVVAAIVQGISVIGMFTALIGMMLAGS 337
Cdd:COG0531  217 NPKRNIPRAIILSLLIVGVLYILVSLALTGVVPYDELAASGAPLADAAEAVFGPWGAILIALGALLSLLGALNASILGAS 296

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 338 RLLYSFGRDGLLPSWLAKLNHKH-LPNRSLIILTIIVVIIGSMF--PFAFLAQLISAGSLVAFMFVSIAMYRLRKREGNd 414
Cdd:COG0531  297 RLLYAMARDGLLPKVFAKVHPRFgTPVNAILLTGVIALLLLLLGaaSFTALASLASVGVLLAYLLVALAVIVLRRRRPD- 375

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488409180 415 lPVPGFKVPLyPVLPAITFVLVFLVFWGLSYEAKLYTLIWFVVGIVIYLFYGVRHSKKNEEPE 477
Cdd:COG0531  376 -LPRPFRVPL-PLIPILGILLCLFLLYLLGPGALLIGLVLLAIGLLLYLLYRRRHPKLLKEAE 436
2A0303 TIGR00906
cationic amino acid transport permease; [Transport and binding proteins, Amino acids, peptides ...
 3-408 1.69e-55

cationic amino acid transport permease; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273330 [Multi-domain]  Cd Length: 557  Bit Score: 194.26  E-value: 1.69e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180    3 SFFKTITRKENPTIYQNKDGHLKRTLRVRDFLALGVGTIVSTSIFTLPGIVAAEHAGPAVALSFLIAAIVAGLVAFTYAE 82
Cdd:TIGR00906   5 TFARCLIRRKIVDLDSREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180   83 MSSAMPFAGSAYSWVNVLFGEFFGWVAGWALLAEYFIAVAFVASGFSANLRGLIS-PLGIKLPTSLSAPFGANGGIIDII 161
Cdd:TIGR00906  85 FGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNkQIGQFRRTYFKLNYDGLAEYPDFF 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  162 AAVVIILTALLLSRGMTEAARIENILVVLKIFAILLFVVVGLTALHVQNYIpfIPEHKvtDTGDFG--GWQGVYAGVSMI 239
Cdd:TIGR00906 165 AVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWS--ITEEK--GAGGFMpyGFTGVLSGAATC 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  240 FLAYIGFDSIAANSAEAINPSKTMPRGILGSLVVAIILFVAVALVLVGMFHYSQYANNAePVGWALRQSGHGVVAAIVQG 319
Cdd:TIGR00906 241 FFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDA-PFPVAFEYVGWDPAKYIVAV 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  320 ISVIGMFTALIGMMLAGSRLLYSFGRDGLLPSWLAKLNHK-HLPNRSLIILTIIVVIIGSMFPFAFLAQLISAGSLVAFM 398
Cdd:TIGR00906 320 GALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKtKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYS 399

                         410
                  ....*....|
gi 488409180  399 FVSIAMYRLR 408
Cdd:TIGR00906 400 LVAACVLILR 409
AA_permease_2 pfam13520
Amino acid permease;
34-462 6.99e-34

Amino acid permease;


Pssm-ID: 404414 [Multi-domain]  Cd Length: 427  Bit Score: 132.43  E-value: 6.99e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180   34 LALGVGTIVSTSIFTLPGIvaaEHAGPAVALSFLIAAIVAGL-VAFTYAEMSSAMPFAGSAYSWVNVLFGEFFGWVAGWA 112
Cdd:pfam13520   7 FALVIGSVIGSGIFVAPLV---ASGGPALIVWGWIAAIIFSLaVGLVYAELSSALPRSGGIYVYLENAFGKFVAFLAGWS 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  113 LLAEYFIAVAFVASGFSANLRGLISPlgiklptslsaPFGANGGIIDIIAAVVIILTALLLSRGMTEAARIENILVVLKI 192
Cdd:pfam13520  84 NWFAYVLGLASSASVAASYLLSALGP-----------DLVPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  193 FAILLFVVVGLTALHVQNYIPFIPEHKVTDTGDfgGWQGVYAGVSMIFLAYIGFDSIAANSAEaiNPSKTMPRGILGSLV 272
Cdd:pfam13520 153 LLPLILIIILGLVTADGGGFNLLSGEWHTFFPD--GWPGVFAGFLGVLWSFTGFESAANVSEE--VKKRNVPKAIFIGVI 228

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  273 VAIILFVAVALVLVGMFHYSQYANNA---EPVGWALRQSGHGVVAAIVQGISVIGMFTALIGMMLAGSRLLYSFGRDGLL 349
Cdd:pfam13520 229 IVGVLYILVNIAFFGVVPDDEIALSSglgQVAALLFQAVGGKWGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVL 308

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  350 P--SWLAKLNHKHLPNRSLIILTIIVVIIGSMFPFA-----FLAQLISAGSLVAFMFVSIAMYRLRKREGNDLPVPGFkV 422
Cdd:pfam13520 309 PfsRFFAKVNKFGSPIRAIILTAILSLILLLLFLLSpaaynALLSLSAYGYLLSYLLPIIGLLILRKKRPDLGRIPGR-W 387

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|
gi 488409180  423 PLYPVLPAITFVLVFLVFWGLSYEAKLYTLIWFVVGIVIY 462
Cdd:pfam13520 388 PVAIFGILFSLFLIVALFFPPVGPATGSSLNYAIILIVAF 427
frlA PRK11357
amino acid permease;
24-475 2.17e-21

amino acid permease;


Pssm-ID: 183096 [Multi-domain]  Cd Length: 445  Bit Score: 96.46  E-value: 2.17e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  24 LKRTLRVRDFLALGVGTIVSTSIFTLPGIVAAEHAGPAVA-LSFLIAAIVAGLVAFTYAEMSSAMPFAGSAYswvnVLFG 102
Cdd:PRK11357   6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTvLAFVIGGLIVIPQMCVYAELSTAYPENGADY----VYLK 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 103 EffgwvAGWALLAEYFIAVAFVASGFSAnlrglISPLGIKLPTSLSAPFGANGGIIDIIAAVVIILTALLLSRGMTEAAR 182
Cdd:PRK11357  82 N-----AGSRPLAFLSGWASFWANDAPS-----LSIMALAIVSNLGFLTPIDPLLGKFIAAGLIIAFMLLHLRSVEGGAA 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 183 IENILVVLKIFAILLFVVVGLTALHVQNYIPfIPEHKVTDTGDFGGwqgVYAGVSMIFLAYIGFDSIAANSAEAINPSKT 262
Cdd:PRK11357 152 FQTLITIAKIIPFTIVIGLGIFWFKAENFAA-PTTTAIGATGSFMA---LLAGISATSWSYTGMASICYMTGEIKNPGKT 227

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 263 MPRGILGSLVVAIILFVAVALVLVGMFHYSQYANNAEPVGWALRQ-----SGHGVVAAIVQGISVIGMFTALIgmmLAGS 337
Cdd:PRK11357 228 MPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWipalgSTAGIFVAITAMIVILGSLSSCV---MYQP 304

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 338 RLLYSFGRDGLlpsWLAKLNHKHLPNRSLIILTIIVVIIGSMFPFAF-LAQLISAGSLVAFMFVSI---AMYRLRKREGN 413
Cdd:PRK11357 305 RLEYAMAKDNL---FFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSdLTSLLGYFTLVMCFKNTLtfgSIIWCRKRDDY 381

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488409180 414 DlpvPGFKVPLYPVLPAITFVLVFLVFWGLSYEAKLYTLIWFVVGIVIYLFYGVRHSKKNEE 475
Cdd:PRK11357 382 K---PLWRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKRSRQ 440
 
Name Accession Description Interval E-value
PotE COG0531
Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];
18-477 1.18e-89

Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];


Pssm-ID: 440297 [Multi-domain]  Cd Length: 438  Bit Score: 280.63  E-value: 1.18e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  18 QNKDGHLKRTLRVRDFLALGVGTIVSTSIFTLPGIVAAeHAGPAVALSFLIAAIVAGLVAFTYAEMSSAMPFAGSAYSWV 97
Cdd:COG0531    3 RGESSELKRKLGLFDLVALGVGAIIGAGIFVLPGLAAG-LAGPAAILAWLIAGLLALLVALSYAELASAFPRAGGAYTYA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  98 NVLFGEFFGWVAGWALLAEYFIAVAFVASGFSANLRGLISPLGIKLPTSLsapfganggiidiiaavVIILTALLLSRGM 177
Cdd:COG0531   82 RRALGPLLGFLAGWALLLSYVLAVAAVAVAFGGYLSSLFPAGGSVLIALV-----------------LILLLTLLNLRGV 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 178 TEAARIENILVVLKIFAILLFVVVGLTALHVQNYIPFIPehkvtdtgDFGGWQGVYAGVSMIFLAYIGFDSIAANSAEAI 257
Cdd:COG0531  145 KESAKVNNILTVLKLLVLLLFIVVGLFAFDPANFTPFLP--------AGGGLSGVLAALALAFFAFTGFEAIANLAEEAK 216

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 258 NPSKTMPRGILGSLVVAIILFVAVALVLVGMFHYSQYANNAEPVGWALRQSGHGVVAAIVQGISVIGMFTALIGMMLAGS 337
Cdd:COG0531  217 NPKRNIPRAIILSLLIVGVLYILVSLALTGVVPYDELAASGAPLADAAEAVFGPWGAILIALGALLSLLGALNASILGAS 296

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 338 RLLYSFGRDGLLPSWLAKLNHKH-LPNRSLIILTIIVVIIGSMF--PFAFLAQLISAGSLVAFMFVSIAMYRLRKREGNd 414
Cdd:COG0531  297 RLLYAMARDGLLPKVFAKVHPRFgTPVNAILLTGVIALLLLLLGaaSFTALASLASVGVLLAYLLVALAVIVLRRRRPD- 375

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488409180 415 lPVPGFKVPLyPVLPAITFVLVFLVFWGLSYEAKLYTLIWFVVGIVIYLFYGVRHSKKNEEPE 477
Cdd:COG0531  376 -LPRPFRVPL-PLIPILGILLCLFLLYLLGPGALLIGLVLLAIGLLLYLLYRRRHPKLLKEAE 436
2A0303 TIGR00906
cationic amino acid transport permease; [Transport and binding proteins, Amino acids, peptides ...
 3-408 1.69e-55

cationic amino acid transport permease; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273330 [Multi-domain]  Cd Length: 557  Bit Score: 194.26  E-value: 1.69e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180    3 SFFKTITRKENPTIYQNKDGHLKRTLRVRDFLALGVGTIVSTSIFTLPGIVAAEHAGPAVALSFLIAAIVAGLVAFTYAE 82
Cdd:TIGR00906   5 TFARCLIRRKIVDLDSREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180   83 MSSAMPFAGSAYSWVNVLFGEFFGWVAGWALLAEYFIAVAFVASGFSANLRGLIS-PLGIKLPTSLSAPFGANGGIIDII 161
Cdd:TIGR00906  85 FGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNkQIGQFRRTYFKLNYDGLAEYPDFF 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  162 AAVVIILTALLLSRGMTEAARIENILVVLKIFAILLFVVVGLTALHVQNYIpfIPEHKvtDTGDFG--GWQGVYAGVSMI 239
Cdd:TIGR00906 165 AVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWS--ITEEK--GAGGFMpyGFTGVLSGAATC 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  240 FLAYIGFDSIAANSAEAINPSKTMPRGILGSLVVAIILFVAVALVLVGMFHYSQYANNAePVGWALRQSGHGVVAAIVQG 319
Cdd:TIGR00906 241 FFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDA-PFPVAFEYVGWDPAKYIVAV 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  320 ISVIGMFTALIGMMLAGSRLLYSFGRDGLLPSWLAKLNHK-HLPNRSLIILTIIVVIIGSMFPFAFLAQLISAGSLVAFM 398
Cdd:TIGR00906 320 GALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKtKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYS 399

                         410
                  ....*....|
gi 488409180  399 FVSIAMYRLR 408
Cdd:TIGR00906 400 LVAACVLILR 409
AA_permease_2 pfam13520
Amino acid permease;
34-462 6.99e-34

Amino acid permease;


Pssm-ID: 404414 [Multi-domain]  Cd Length: 427  Bit Score: 132.43  E-value: 6.99e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180   34 LALGVGTIVSTSIFTLPGIvaaEHAGPAVALSFLIAAIVAGL-VAFTYAEMSSAMPFAGSAYSWVNVLFGEFFGWVAGWA 112
Cdd:pfam13520   7 FALVIGSVIGSGIFVAPLV---ASGGPALIVWGWIAAIIFSLaVGLVYAELSSALPRSGGIYVYLENAFGKFVAFLAGWS 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  113 LLAEYFIAVAFVASGFSANLRGLISPlgiklptslsaPFGANGGIIDIIAAVVIILTALLLSRGMTEAARIENILVVLKI 192
Cdd:pfam13520  84 NWFAYVLGLASSASVAASYLLSALGP-----------DLVPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  193 FAILLFVVVGLTALHVQNYIPFIPEHKVTDTGDfgGWQGVYAGVSMIFLAYIGFDSIAANSAEaiNPSKTMPRGILGSLV 272
Cdd:pfam13520 153 LLPLILIIILGLVTADGGGFNLLSGEWHTFFPD--GWPGVFAGFLGVLWSFTGFESAANVSEE--VKKRNVPKAIFIGVI 228

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  273 VAIILFVAVALVLVGMFHYSQYANNA---EPVGWALRQSGHGVVAAIVQGISVIGMFTALIGMMLAGSRLLYSFGRDGLL 349
Cdd:pfam13520 229 IVGVLYILVNIAFFGVVPDDEIALSSglgQVAALLFQAVGGKWGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVL 308

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  350 P--SWLAKLNHKHLPNRSLIILTIIVVIIGSMFPFA-----FLAQLISAGSLVAFMFVSIAMYRLRKREGNDLPVPGFkV 422
Cdd:pfam13520 309 PfsRFFAKVNKFGSPIRAIILTAILSLILLLLFLLSpaaynALLSLSAYGYLLSYLLPIIGLLILRKKRPDLGRIPGR-W 387

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|
gi 488409180  423 PLYPVLPAITFVLVFLVFWGLSYEAKLYTLIWFVVGIVIY 462
Cdd:pfam13520 388 PVAIFGILFSLFLIVALFFPPVGPATGSSLNYAIILIVAF 427
AnsP COG1113
L-asparagine transporter or related permease [Amino acid transport and metabolism];
18-469 4.02e-29

L-asparagine transporter or related permease [Amino acid transport and metabolism];


Pssm-ID: 440730 [Multi-domain]  Cd Length: 458  Bit Score: 119.07  E-value: 4.02e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  18 QNKDGHLKRTLRVR--DFLALGvGTIvSTSIFTLPGIVAAEhAGPAVALSFLIAAIVAGLVAFTYAEMSSAMPFAGSAYS 95
Cdd:COG1113    7 ASEEEGLKRGLKNRhiQMIALG-GAI-GTGLFLGSGKAIAL-AGPAVLLSYLIAGLIVFLVMRALGEMAVANPVSGSFSD 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  96 WVNVLFGEFFGWVAGWALLAEYFIAVAFVASGFSANLRGLISplgiKLPTSLSApfganggiidiiAAVVIILTAL-LLS 174
Cdd:COG1113   84 YAREYLGPWAGFVTGWLYWFFWVLVGMAEATAVGIYLQFWFP----DVPQWVWA------------LVFLVLLTAInLLS 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 175 -RGMTEaarIENILVVLKIFAILLFVVVGLTALHVQNYIPFIPE---HKVTDTGDF--GGWQGVYAGVSMIFLAYIGFDS 248
Cdd:COG1113  148 vKLFGE---FEFWFALIKVVAIVAFIVVGLLLIFFGFGLPGGPPaglSNLWDHGGFfpNGIGGVLAALQIVVFAFGGIEL 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 249 IAANSAEAINPSKTMPRGIlGSLVVAIILF-VAVALVLVGMFHYSQYANNAEPVGWALRQSGHGVVAAIVQGISVIGMFT 327
Cdd:COG1113  225 VGIAAAEAKDPEKTIPKAI-NSVIWRILLFyVGSLFVILALVPWNQIGAGGSPFVTVFSLLGIPAAAGIMNFVVLTAALS 303

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 328 ALIGMMLAGSRLLYSFGRDGLLPSWLAKLNHKHLPNRSLI---ILTIIVVIIGSMFP---FAFLAQLISAGSLVAFMFVS 401
Cdd:COG1113  304 SLNSGLYSTSRMLYSLAERGDAPKFFGKLSKRGVPVRAILlsaVVLLIGVVLNYLLPekaFTFLLSISGFGALFVWLMIL 383

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488409180 402 IAMYRLRKR-EGNDLPVPGFKVPLYPVLPAITFVLVFLVFWGLSYEAK-----LYTLIWFVVGIVIYLFYGVRH 469
Cdd:COG1113  384 VSQLKFRRRlPREGAAALKFKMPGFPYTSYLTLAFLAAVLVLMAFDPDtrialIVGPVWLALLVVGYFLVRRRR 457
AA_permease pfam00324
Amino acid permease;
36-465 3.20e-24

Amino acid permease;


Pssm-ID: 366028 [Multi-domain]  Cd Length: 467  Bit Score: 105.09  E-value: 3.20e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180   36 LGVGTIVSTSIFTLPGIVAAEHAGPAVALSFLIAAIVAGLVAFTYAEMSSAMPFAGSAYSWVNVLFGEFFGWVAGWALLA 115
Cdd:pfam00324   5 IALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYASRFLGPSLGFATGWNYWL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  116 EYFIAVAFVASGFSANLrglisplgiklptSLSAPFGANGGIIDIIAAVVIILTALLLSrGMTEAARIENILVVLKIFAI 195
Cdd:pfam00324  85 SWITVLALELTAASILI-------------QFWELVPDIPYLWVWGAVFLVLLTIINLV-GVKWYGEAEFWFALIKIIAI 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  196 LLFVVVGLTALHVQNYIPFIPEHKVTDTGD----FGGWQGVYAGVSMI-FLAYIGFDSIAANSAEAINPSKTMPRGILGS 270
Cdd:pfam00324 151 IGFIIVGIILLSGGNPNDGAIFRYLGDNGGknnfPPGFGKGFISVFVIaFFAFTGIELVGIAAGEVKNPEKSIPKAILQV 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  271 LVVAIILFVAVALVLVGMFHYSQY------ANNAEPVGWALRQSGHGVVAAIVQGISVIGMFTALIGMMLAGSRLLYSFG 344
Cdd:pfam00324 231 IWRITIFYILSLLAIGLLVPWNDPgllndsASAASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLYSLA 310

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  345 RDGLLPSWLAKLNHKHLPNRSLII------LTIIVVIIGSMFPFAFLAQLISAGSLVAFMFVSIAMYRLRKR---EGNDL 415
Cdd:pfam00324 311 RDGLAPKFLKKVDKRGVPLRAILVsmvislLALLLASLNPAIVFNFLLAISGLSGLIVWGLISLSHLRFRKAfkyQGRSI 390

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488409180  416 PVPGFKVPLYP-----VLPAITFVLVFLVF------------WGLSYEAKLY-TLIWFVVGIVIYLFY 465
Cdd:pfam00324 391 DELPFKAPLGPlgvilGLAAIIIILIIQFLyaflpvpggpknWGAGSFAAAYlIVLLFLIILIGVKLH 458
LysP COG0833
Amino acid permease [Amino acid transport and metabolism];
18-477 5.43e-24

Amino acid permease [Amino acid transport and metabolism];


Pssm-ID: 440595 [Multi-domain]  Cd Length: 467  Bit Score: 104.48  E-value: 5.43e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  18 QNKDGHLKRTLRVRDFLALGVGTIVSTSIFTLPGIVAAEhAGPAVA-LSFLIAAIVAGLVAFTYAEMSSAMPFAGS--AY 94
Cdd:COG0833    4 SEKQNKLKRGLKSRHLSMIALGGVIGTGLFLASGYTISQ-AGPGGAlLAYLLGGLMVYFLMTSLGELAVAMPVSGSfqTY 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  95 S--WVNVLFGEFFGWV--AGWAL-LAEYFIAVAFVASGFSANLRGLIsplgiklptsLSAPFGAnggiidiiaavviILT 169
Cdd:COG0833   83 AtrFIDPAFGFAVGWNywLNWAItVAAELTAAGIIMQYWFPDVPVWI----------WSLLFLA-------------LIF 139

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 170 AL-LLS-RGMTEAariENILVVLKIFAILLFVVVGLTALhvqnyIPFIPEHK------VTDTGDF-GGWQGVYAGVSMIF 240
Cdd:COG0833  140 LLnALSvKAFGES---EFWFSLIKVITVIAFIIVGLLMI-----FGIIGGHApgfsnfTTGDGPFpGGFLAILGVMMIVG 211

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 241 LAYIGFDSIAANSAEAINPSKTMPRGILGSLVVAIILFVAVALVLVGMFHYSQYANNAEPVGWALRQSGHGVVAAIVQgi 320
Cdd:COG0833  212 FSFQGTELIGIAAGESENPEKTIPKAIRQVFWRILLFYILAIFVIAALIPYTDAGVAESPFTLVFERAGIPYAADIMN-- 289

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 321 SVIgmFTALIGM----MLAGSRLLYSFGRDGLLPSWLAKLNHKHLPNRSLIILTIIVViigsmfpFAFLAQLISAGSL-- 394
Cdd:COG0833  290 AVI--LTAVLSAgnsgLYASTRMLWSLAKEGMAPKIFAKLNKRGVPLNALLATMAVGL-------LALLSSFFGAGTVyl 360

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 395 -----------VAFMFVSIAMYRLRK---REGNDLPVPGFKVPLYPVLPAITFVLVFLVFWGLSY--EAKLYTLIWFVVG 458
Cdd:COG0833  361 wllsisgltgfIAWLGIAISHYRFRRayvAQGGDLEDLKYKAPLFPFGPIFAFILCLIVIIGQAFdpEQRIALYIGIPFF 440

                        490
                 ....*....|....*....
gi 488409180 459 IVIYLFYGVRHSKKNEEPE 477
Cdd:COG0833  441 LACYLGYKLKKKTKLVPLE 459
frlA PRK11357
amino acid permease;
24-475 2.17e-21

amino acid permease;


Pssm-ID: 183096 [Multi-domain]  Cd Length: 445  Bit Score: 96.46  E-value: 2.17e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  24 LKRTLRVRDFLALGVGTIVSTSIFTLPGIVAAEHAGPAVA-LSFLIAAIVAGLVAFTYAEMSSAMPFAGSAYswvnVLFG 102
Cdd:PRK11357   6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTvLAFVIGGLIVIPQMCVYAELSTAYPENGADY----VYLK 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 103 EffgwvAGWALLAEYFIAVAFVASGFSAnlrglISPLGIKLPTSLSAPFGANGGIIDIIAAVVIILTALLLSRGMTEAAR 182
Cdd:PRK11357  82 N-----AGSRPLAFLSGWASFWANDAPS-----LSIMALAIVSNLGFLTPIDPLLGKFIAAGLIIAFMLLHLRSVEGGAA 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 183 IENILVVLKIFAILLFVVVGLTALHVQNYIPfIPEHKVTDTGDFGGwqgVYAGVSMIFLAYIGFDSIAANSAEAINPSKT 262
Cdd:PRK11357 152 FQTLITIAKIIPFTIVIGLGIFWFKAENFAA-PTTTAIGATGSFMA---LLAGISATSWSYTGMASICYMTGEIKNPGKT 227

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 263 MPRGILGSLVVAIILFVAVALVLVGMFHYSQYANNAEPVGWALRQ-----SGHGVVAAIVQGISVIGMFTALIgmmLAGS 337
Cdd:PRK11357 228 MPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWipalgSTAGIFVAITAMIVILGSLSSCV---MYQP 304

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 338 RLLYSFGRDGLlpsWLAKLNHKHLPNRSLIILTIIVVIIGSMFPFAF-LAQLISAGSLVAFMFVSI---AMYRLRKREGN 413
Cdd:PRK11357 305 RLEYAMAKDNL---FFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSdLTSLLGYFTLVMCFKNTLtfgSIIWCRKRDDY 381

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488409180 414 DlpvPGFKVPLYPVLPAITFVLVFLVFWGLSYEAKLYTLIWFVVGIVIYLFYGVRHSKKNEE 475
Cdd:PRK11357 382 K---PLWRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKRSRQ 440
2A0308 TIGR00911
L-type amino acid transporter; [Transport and binding proteins, Amino acids, peptides and ...
 24-464 1.54e-17

L-type amino acid transporter; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273332 [Multi-domain]  Cd Length: 501  Bit Score: 85.18  E-value: 1.54e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180   24 LKRTLRVRDFLALGVGTIVSTSIFTLPGIVAAEHAGPAVALSFLIA-AIVAGLVAFTYAEMSSAMPFAGSAYSWVNVLFG 102
Cdd:TIGR00911  40 LKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVcGIFSIVGALVYAELGTTIPKSGGEYNYILEVFG 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  103 EFFGWVAGW-ALLAEYFIAVAFVASGFSanlRGLISPLGIKLPTSLSApfganggiIDIIAAVVIILTALLLSRGMTEAA 181
Cdd:TIGR00911 120 PLLAFLRLWiELLVIRPGSQAVNALNFA---IYILTPVFPDCEVPEWA--------IRLVAVLCVLLLTLVNCLSVKWAT 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  182 RIENILVVLKIFAILLFVVVGLTALHVQNYIPFIPEHKVTDT-GDFGGW-QGVYAGvsmiFLAYIGFDSIAANSAEAINP 259
Cdd:TIGR00911 189 RVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTeTSAGGIvLAFYSG----IWAYGGWNYLNFVTEEVKNP 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  260 SKTMPRGILGSLVVAIILFVAVALVLVGMFHYSQY-ANNAEPVGWALRQSGH-GVVAAIVQGISVIGmftALIGMMLAGS 337
Cdd:TIGR00911 265 YRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELlASLAVAVDFGERLLGVmSWAMPALVGLSCFG---SVNGSLFSSS 341

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  338 RLLYSFGRDGLLPSWLAKLNHKHLPNRSLIILTIIVVIIGSMFPFAF-LAQLIS-AGSLVAFMFVSIAMYRLRKREgnDL 415
Cdd:TIGR00911 342 RLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYsLINLISfANWLFNALAVAGLLWLRYKRP--EM 419

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|.
gi 488409180  416 PVPgFKVPLY-PVLPAITFV-LVFLVFWGLSYEAKLYTLIwFVVGIVIYLF 464
Cdd:TIGR00911 420 NRP-IKVPLFfPVFFLLSCLfLIILSLYSPPVGCGVGFII-MLTGVPVYFF 468
PRK10238 PRK10238
aromatic amino acid transporter AroP;
18-464 3.54e-16

aromatic amino acid transporter AroP;


Pssm-ID: 182324 [Multi-domain]  Cd Length: 456  Bit Score: 80.77  E-value: 3.54e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  18 QNKDGHLKRTLRVRDFLALGVGTIVSTSIFtLPGIVAAEHAGPAVALSFLIAAIVAGLVAFTYAEMSSAMPFAGSAYSWV 97
Cdd:PRK10238   4 QQHGEQLKRGLKNRHIQLIALGGAIGTGLF-LGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFA 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  98 NVLFGEFFGWVAGWallaEYFIAVAFVASGFSANLRGLISPLGIKLPTSLSApfganggiidiiAAVVIILTALLLSrGM 177
Cdd:PRK10238  83 YKYWGSFAGFASGW----NYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSA------------AVFFVVINAINLT-NV 145

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 178 TEAARIENILVVLKIFAILLFVVVGLTALHVQNYIPFIPEHKVTDTGDF--GGWQGVYAGVSMIFLAYIGFDSIAANSAE 255
Cdd:PRK10238 146 KVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFlpHGFTGLVMMMAIIMFSFGGLELVGITAAE 225

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 256 AINPSKTMPRGILGSLVVAIILFVAVALVLVGMFHYSQYANNAEPVGWALRQSGHGVVAAIVQGISVIGMFTALIGMMLA 335
Cdd:PRK10238 226 ADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYC 305

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 336 GSRLLYSFGRDGLLPSWLAKLNHKHLPNRSLIILTIIVV---IIGSMFP---FAFLAQLISAGSLVAFMFVSIAMYRLRK 409
Cdd:PRK10238 306 NSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTAlcvLINYLAPesaFGLLMALVVSALVINWAMISLAHMKFRR 385

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488409180 410 REGNDLPVPGFKVPLYP------VLPAITFVLVFLVFWGLSYEAKLYTlIWFVVGIVIYLF 464
Cdd:PRK10238 386 AKQEQGVVTRFPALLYPlgnwicLLFMAAVLVIMLMTPGMAISVYLIP-VWLIVLGIGYLF 445
2A0310 TIGR00913
amino acid permease (yeast); [Transport and binding proteins, Amino acids, peptides and amines]
 25-467 5.09e-16

amino acid permease (yeast); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273334  Cd Length: 478  Bit Score: 80.41  E-value: 5.09e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180   25 KRTLRVRDFLALGVGTIVSTSIFTLPGIVAAeHAGPAVAL-SFLIAAIVAGLVAFTYAEMSSAMPFAGSAYS-WVNVLFG 102
Cdd:TIGR00913   1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALA-TGGPAGLLiGYAIMGSIIYCVMQSLGEMATFYPVVSGSFAtYASRFVD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  103 EFFGWVAGWALLAEYFIAVAFVASGFSanlrGLISPLGIKLPTslsapfgangGIIDIIAAVVIILTALLLSRGMTEAar 182
Cdd:TIGR00913  80 PAFGFAVGWNYWLQWLIVLPLELVTAS----MTIQYWTDKVNP----------AVWIAIFYVFIVIINLFGVKGYGEA-- 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  183 iENILVVLKIFAILLFVVVG--LTALHVQNyIPFIPEHKVTDTGDFGG--WQGVYAGVSMIFL----AYIGFDSIAANSA 254
Cdd:TIGR00913 144 -EFWFSSIKILAIIGFIILSiiLNCGGGPN-HGYIGFRYWHDPGAFAGgtIGGRFKGVCSVFVtaafSFGGTELVALTAG 221

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  255 EAINPSKTMPRGILGSlVVAIILFVAVALVLVGMFHY----------SQYANNAEPVGWALRQSGHGVVAAIVQGISVIG 324
Cdd:TIGR00913 222 EAANPRKSIPRAAKRT-FWRILVFYILTLFLIGFLVPyndprllsssSSSDSAASPFVIAIQNHGIKVLPHIFNAVILIS 300

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  325 MFTALIGMMLAGSRLLYSFGRDGLLPSWLAKLNHKHLPNRSLIILTI------IVVIIGSMFPFAFLAQLISAGSLVAFM 398
Cdd:TIGR00913 301 VLSAANSSLYASSRTLYALAHQGLAPKIFAYVDRRGVPYVAVIVSSLfgllafLAVSKKEAEVFTWLLNISGLSGFFTWM 380

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  399 FVSIAMYRLR---KREGNDLPVPGFKVPLYPVLPAITFVLVFLV----FW------GLSYEAKLYTLIWFVVGIVIYLFY 465
Cdd:TIGR00913 381 CICLSHIRFRkamKAQGRSLDELPYKSQTGPYGSYYALFFNILIliaqGYvafapvKFSAKSFFEAYLSLPIFIALYIGH 460


                  ..
gi 488409180  466 GV 467
Cdd:TIGR00913 461 KV 462
2A0305 TIGR00908
ethanolamine permease; The three genes used as the seed for this model (from Burkholderia ...
 99-477 1.68e-15

ethanolamine permease; The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 129986 [Multi-domain]  Cd Length: 442  Bit Score: 78.34  E-value: 1.68e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180   99 VLFGEFFGWVAGWA-------LLAEYFIAVAFVA---------------------------------SGFSANLRGLISP 138
Cdd:TIGR00908  22 VISGDYAGWNFGLAqggwggfVVATLLVATMYLTfcfslaelstmiptagggygfarrafgpwggflAGTAILIEFAFAP 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  139 LGIKLPTSLSAPFGANGGIIDIIAAVVIILTALLLSRGMTEAARIENILVVLKIFAILLFVVVGLTALHVQNYipFIPEH 218
Cdd:TIGR00908 102 PAIACFIGAYCESLFPVGPGWLAALVFYIVFIGINILGVGEAAKLEFVVTAVAIIALGVFIGAMVPHFDSANL--FNGPQ 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  219 KVTDTGDFGGWQGVYAGVSMIFLAYIGFDSIAANSAEAINPSKTMPRGILGSLVVAIILFVAVALVLVGMFHYSQYANNA 298
Cdd:TIGR00908 180 TGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSN 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  299 EPVGWALrQSGHGVVAAIVQGISVIGMF---TALIGMMLAGSRLLYSFGRDGLLPSWLAKLNHKHLPNRSLIILTIIVVI 375
Cdd:TIGR00908 260 NPLPEAL-ESIYGGSTWMSQFVNLVGLFgliASFHGIIYGYSRQIFALSRAGYLPESLSKVNRKKAPVLAIVVPGVIGFG 338

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  376 IGSMFPFAFLAQLISAGSLVAFMFVSIAMYRLRKREgNDLPVPgFKVPLYPVLPAITFVLVfLVFWGLSYEAKLYTLIW- 454
Cdd:TIGR00908 339 LSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRR-PDMERP-YRTPGGILTPGVALVLA-CVALVTGFYVDPRVVVGa 415

                         410       420
                  ....*....|....*....|....*.
gi 488409180  455 ---FVVGIVIYLFYGVRHSKKNEEPE 477
Cdd:TIGR00908 416 vaiFVVLIGYYFLYSRHHLVSGTPEE 441
PRK11387 PRK11387
S-methylmethionine permease;
18-454 2.04e-15

S-methylmethionine permease;


Pssm-ID: 236904  Cd Length: 471  Bit Score: 78.35  E-value: 2.04e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  18 QNKDGHLKRTLRVRDFLALGVGTIVSTSIFTLPGIVAAEHAGPAVALSFLIAAIVAGLVAFTYAEMSSAMPFAGSAYSWV 97
Cdd:PRK11387   6 SQQAGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  98 NVLFGEFFGWVAGWALLAEYFIAV--AFVASGFSANLRGLISPLGIKLPTSLSAPFGANggiidiiaavviiltaLLLSR 175
Cdd:PRK11387  86 ARYLGPATGYTVAWLYWLTWTVALgsSLTAAGFCMQYWFPQVPVWPWCLLFCALIFGLN----------------VVSTR 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 176 GMTEAariENILVVLKIFAILLFVVVGLTA----LHVQNYIPFIPEHKVTDTGDF--GGWQGVYAGVSMIFlAYIGFDSI 249
Cdd:PRK11387 150 FFAEG---EFWFSLIKVVTILAFIVLGGAAifgfIPMQDGSPAPGLRNLTAEGWFphGGLPILMTMVAVNF-AFSGTELI 225

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 250 AANSAEAINPSKTMPRGILGSLVVAIILFVAVALVLVGMFHYSQYANNAEPVGWALRQSGHGVVAAIVQGISVIGMFTAL 329
Cdd:PRK11387 226 GIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAA 305

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 330 IGMMLAGSRLLYSFGRDGLLPSWLAKLNHKHLPNRSLIILT---IIVVIIGSMFP-FAFLAQLISAGSLVAFMFVSIA-- 403
Cdd:PRK11387 306 NSGLYASGRMLWSLSNEGTLPACFARLTKRGIPLTALSVSMlggLLALFSSVVAPdTVFVALSAISGFAVVAVWLSICas 385

                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....
gi 488409180 404 --MYRLRK-REGNDLPVPGFKVPLYPVLPAITFVLVFLVFWGLSYEAKLYTLIW 454
Cdd:PRK11387 386 hfMFRRRHlRDGKALSELAYRAPWYPLTPILGFVLCLLACVGLAFDPSQRIALW 439
PRK10249 PRK10249
phenylalanine transporter; Provisional
 19-426 1.04e-12

phenylalanine transporter; Provisional


Pssm-ID: 236667  Cd Length: 458  Bit Score: 70.02  E-value: 1.04e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  19 NKDGHLKRTLRVRDFLALGVGTIVSTSIFTLPGiVAAEHAGPAVALSFLIAAIVAGLVAFTYAEMSSAMPFAGSAYSWVN 98
Cdd:PRK10249  14 NQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIG-PAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  99 VLFGEFFGWVAGWallaEYFiaVAFVASGFsANLRGLISPLGIKLPTSLSAPFGAnggiidiIAAVVIILTALLLSRGMT 178
Cdd:PRK10249  93 KYWGPFAGFLSGW----NYW--VMFVLVGM-AELTAAGIYMQYWFPDVPTWIWAA-------AFFIIINAVNLVNVRLYG 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 179 EAariENILVVLKIFAILLFVVVGLTALHVQNYIPFIPEHKVTDTGDF--GGWQGVYAGVSMIFLAYIGFDSIAANSAEA 256
Cdd:PRK10249 159 ET---EFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFfaTGWNGLILSLAVIMFSFGGLELIGITAAEA 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 257 INPSKTMPRGILGSLVVAIILFVAVALVLVGMFHYSQYANNAEPVGWALRQSGHGVVAAIVQGISVIGMFTALIGMMLAG 336
Cdd:PRK10249 236 RDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSN 315

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 337 SRLLYSFGRDGLLPSWLAKLNHKHLPNRSLI---ILTIIVVIIGSMFP---FAFLAQLISAGSLVAFMFVSIAMYRLR-- 408
Cdd:PRK10249 316 SRMLFGLSVQGNAPKFLTRVSRRGVPINSLMlsgAITSLVVLINYLLPqkaFGLLMALVVATLLLNWIMICLAHLRFRaa 395

                        410
                 ....*....|....*....
gi 488409180 409 -KREGNDLPvpgFKVPLYP 426
Cdd:PRK10249 396 mRRQGRETQ---FKALLYP 411
PRK15049 PRK15049
L-asparagine permease;
31-468 1.55e-11

L-asparagine permease;


Pssm-ID: 185009  Cd Length: 499  Bit Score: 66.18  E-value: 1.55e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  31 RDFLALGVGTIVSTSIFTLPGiVAAEHAGPAVALSFLIAAIVAGLVAFTYAEMSSAMPFAGSAYSWVNVLFGEFFGWVAG 110
Cdd:PRK15049  33 RQVQMIAIGGAIGTGLFLGAG-ARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGEKAAYVAG 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 111 WAllaeYFIAVAfvasgfsanLRGLISPLGIKLPTSLSAPFGanGGIIDIIAAVVIILTALLLSRGMTEAARIENILVVL 190
Cdd:PRK15049 112 WM----YFINWA---------MTGIVDITAVALYMHYWGAFG--GVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALI 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 191 KIFAILLFVVVGLTALHV-----QNYIPFipeHKVTDTGDF--GGWQGVYAGVSMIFLAYIGFDSIAANSAEAINPSKTM 263
Cdd:PRK15049 177 KVLAIVTFLVVGTVFLGSgqpldGNTTGF---HLITDNGGFfpHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMV 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 264 PRGILGSLVVAIILFVAVALVLVGMFHYSQYANNAEPVGWALRQSGHGVVAAIVQGISVIGMFTALIGMMLAGSRLLYSF 343
Cdd:PRK15049 254 PKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSM 333

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 344 GRDGLLPSWLAKLNHKHLPNR---SLIILTIIVVIIGSMFP---FAFLAQLISAGSLVAFMFVSIAMYRLRK--REGNDL 415
Cdd:PRK15049 334 AMGGSAPSFMAKMSRQHVPYAgilATLVVYVVGVFLNYLVPsrvFEIVLNFASLGIIASWAFIIVCQMRLRKaiKEGKAA 413

                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 488409180 416 PVpGFKVPLYPVLPAIT--FVLVFLVFWGLSYEAKLYTLIWF-VVGIVIYL-FYGVR 468
Cdd:PRK15049 414 DV-SFKLPGAPFTSWLTllFLLSVLVLMAFDYPNGTYTIAALpIIGILLVIgWFGVR 469
PRK10644 PRK10644
arginine/agmatine antiporter;
39-469 9.20e-11

arginine/agmatine antiporter;


Pssm-ID: 182613 [Multi-domain]  Cd Length: 445  Bit Score: 63.66  E-value: 9.20e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  39 GTIVSTSIFTLPGIVAAehAGPAVALSFLIAAIVAGLVAFTYAEMSSAMPFAGSAYSWVNVLFGEFFG-------WVAGW 111
Cdd:PRK10644  21 GNIMGSGVFLLPANLAS--TGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPFLGyqtnvlyWLACW 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 112 alLAEYFIAVAFVASgFSANLRGLISPLGIKLptslsapfganggiidiIAAVVIILTALLLSRGMTEAARIENILVVLK 191
Cdd:PRK10644  99 --IGNIAMVVIGVGY-LSYFFPILKDPLVLTI-----------------TCVVVLWIFVLLNIVGPKMITRVQAVATVLA 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 192 IFAILLFVVVGLTALHVQNYIPfipEHKVTDTGDFGGWQgvyAGVSMIFLAYIGFDSIAANSAEAINPSKTMPRGILGSL 271
Cdd:PRK10644 159 LIPIVGIAVFGWFWFRGETYMA---AWNVSGLGTFGAIQ---STLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGV 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 272 VVAIILFVAVALVLVGMFHYSQYANNAEPVGWALRQSGHGVVAAIVQGISVIGMFTALIGMMLAGSRLLYSFGRDGLLPS 351
Cdd:PRK10644 233 LIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPP 312

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 352 WLAKLNHKHLPNRSLI--ILTIIVVIIGSMFP-----FAFLAQLISAGSLVAFMFVSIAMYRLRKREgndlpvPGFKVPL 424
Cdd:PRK10644 313 IFARVNKAGTPVAGLLivGVLMTIFQLSSISPnaskeFGLVSSVSVIFTLVPYLYTCAALLLLGHGH------FGKARPA 386

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*.
gi 488409180 425 YPVLPAITFVLVFLVFWGLSYEAKLYTLIWFVVGIVIY-LFYGVRH 469
Cdd:PRK10644 387 YLAVTLIAFVYCIWAVVGSGAKEVMWSFVTLMVITAFYaLNYNRLH 432
PRK10197 PRK10197
GABA permease;
36-440 3.44e-10

GABA permease;


Pssm-ID: 182297  Cd Length: 446  Bit Score: 61.95  E-value: 3.44e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  36 LGVGTIVSTSIFTLPGIVAAEhAGPAVALSFLIAAIVAGLVAFTYAEMSSAMPFAGSAYSWVNVLFGEFFGWVAGWALLA 115
Cdd:PRK10197   2 LSIAGVIGASLFVGSSVAIAE-AGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWW 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 116 EYFIAVAFVASGFSANLRGLISPLGIKLpTSLSAPFGANGGIidiiaavviiltalLLSrgMTEAARIENILVVLKIFAI 195
Cdd:PRK10197  81 FWVLVIPLEANIAAMILHSWVPGIPIWL-FSLVITLALTGSN--------------LLS--VKNYGEFEFWLALCKVIAI 143

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 196 LLFVVVGLTAlhVQNYIPFIPEHKVTDTGDFGGWQ-----GVYAGVSMIFLAYIGFDSIAANSAEAINPSKTMPRGILGS 270
Cdd:PRK10197 144 LAFIFLGAVA--ISGFYPYAEVSGISRLWDSGGFMpngfgAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSV 221

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 271 LVVAIILFVAVALVLVGMFHYSQYANNAEPVGWALRQSGHGVVA-AIVQGISVIGMFTALIGMMLAGSRLLYSFGRDGLL 349
Cdd:PRK10197 222 IWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAkLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDA 301

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 350 PSWLAKLNHKHLP------NRSLIILTIIVVIIGSMFPFAFLAQLISAGSLVAFMFVSIAMYRLRK---REGNDLPVpgf 420
Cdd:PRK10197 302 PAVMGKINRSKTPyvavllSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKilrAEGSEIRL--- 378

                        410       420
                 ....*....|....*....|....*
gi 488409180 421 KVPLYP-----VLPAITFVLVFLVF 440
Cdd:PRK10197 379 RMWLYPwltwlVIGFITFVLVVMLF 403
2A0304 TIGR00907
amino acid permease (GABA permease); [Transport and binding proteins, Amino acids, peptides ...
 23-350 1.13e-09

amino acid permease (GABA permease); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273331 [Multi-domain]  Cd Length: 482  Bit Score: 60.53  E-value: 1.13e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180   23 HLKRTLRVRDFLALGVG------TIVSTSIFTLPGivaaeHAGPAVALSFLIAAIVAGLVAFTYAEMSSAMPFAGSAYSW 96
Cdd:TIGR00907   9 ELKREFSLWSIFGFAFSisnswtGISTTYNYGLSS-----GGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFW 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180   97 VNVLFGE----FFGWVAGWALLAEYfiaVAFVASGFSANLRGLISPLGIKLPTSLSAP-----FGANGGIIDIIAAVVII 167
Cdd:TIGR00907  84 SAKLAPPrqmpFASWMTGWFNLAGQ---VAGTASTDLSVAQLILGIVSLTTPGREYIPtrwhiFGIMIGIHLIHALINSL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  168 LTALLlsRGMTEAARIENILVVLKIFAILLfvvvgLTALHVQNYIPFIPEHKVTDTGdfGGWQGVYA---GVSMIFLAYI 244
Cdd:TIGR00907 161 PTKWL--PRITSSAAYWSLLGFLTICITLL-----ACKSPKFNDGKFVFTNFNNSTG--GWKPGGFAfllGLLNPAWSMT 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  245 GFDSIAANSAEAINPSKTMPRGILGSLVVAIIL---FVAVALVLVGMFHYSQYANNAEPVGWALRQSGHGVVAAIVQGIS 321
Cdd:TIGR00907 232 GYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTgfcFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCL 311

                         330       340       350
                  ....*....|....*....|....*....|
gi 488409180  322 VIG-MFTALIGMMLAGSRLLYSFGRDGLLP 350
Cdd:TIGR00907 312 ILVtSFFCAITCMTANSRMIYAFSRDGGLP 341
PRK10746 PRK10746
putative transport protein YifK; Provisional
 19-362 1.36e-09

putative transport protein YifK; Provisional


Pssm-ID: 182694  Cd Length: 461  Bit Score: 60.22  E-value: 1.36e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  19 NKDGHLKRTLRVRDFLALGVGTIVSTSIFtLPGIVAAEHAGPAVALSFLIAAIVAGLVAFTYAEMSSAMPFAGSAYSWVN 98
Cdd:PRK10746   3 DNKPELQRGLEARHIELIALGGTIGVGLF-MGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAH 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  99 VLFGEFFGWVAGWALlaeYFIavaFVASGFSAnlrglISPLGI-------KLPTSLSApfganggiidiiaAVVIILTAL 171
Cdd:PRK10746  82 RYMSPFFGYLTAWSY---WFM---WMAVGISE-----ITAIGVyvqfwfpEMAQWIPA-------------LIAVALVAL 137

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 172 LLSRGMTEAARIENILVVLKIFAILLFVVVGLTALH--VQNYIPFIPEHKVTDTGDF--GGWQGVYAGVSMIFLAYIGFD 247
Cdd:PRK10746 138 ANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFfgFGNGGQSIGFSNLTEHGGFfaGGWKGFLTALCIVVASYQGVE 217

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 248 SIAANSAEAINPSKTMPRGILGSLVVAIILFVAVALVLVGMFHYSQYANNAEPVGWALRQSGHGVVAAIVQGISVIGMFT 327
Cdd:PRK10746 218 LIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALS 297

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 488409180 328 ALIGMMLAGSRLLYSFGRDGLLPSWLAKLNHKHLP 362
Cdd:PRK10746 298 GCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVP 332
PRK10836 PRK10836
lysine transporter; Provisional
 24-478 2.65e-09

lysine transporter; Provisional


Pssm-ID: 182767  Cd Length: 489  Bit Score: 59.45  E-value: 2.65e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  24 LKRTLRVRDFLALGVGTIVSTSIFTLPGIVAAEhAGPAVAL-SFLIAAIVAGLVAFTYAEMSSAMPFAGSAYSWVNVLFG 102
Cdd:PRK10836  13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQ-AGPGGALlSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVE 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 103 EFFGWVAGWALLAEY--FIAVAFVASGFSANLRGLISPLGIKLPTSLSAPFganggiidiiaavviiLTALLLSRGMTEA 180
Cdd:PRK10836  92 EGFGFALGWNYWYNWavTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIF----------------LLNYISVRGFGEA 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 181 ariENILVVLKIFAILLFVVVGLTALhvqnyipfIPEHKVTDTGDFGGWQ-------GVYA---GVSMIF-LAYIGFDSI 249
Cdd:PRK10836 156 ---EYWFSLIKVTTVIVFIIVGVLMI--------IGIFKGAEPAGWSNWTigdapfaGGFAamiGVAMIVgFSFQGTELI 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 250 AANSAEAINPSKTMPRGILgSLVVAIILFVAVALVLVGMF----HYSQYANNAE-----PVGWALRQSGHGVVAAIVQGI 320
Cdd:PRK10836 225 GIAAGESEDPAKNIPRAVR-QVFWRILLFYVFAILIISLIipytDPSLLRNDVKdisvsPFTLVFQHAGLLSAAAVMNAV 303

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 321 SVIGMFTALIGMMLAGSRLLYSFGRDGLLPSWLAKLNHKHLPNRSLIILTIIVVI--IGSMF--PFAFLAQLISAG--SL 394
Cdd:PRK10836 304 ILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLSRGGVPRNALYATTVIAGLcfLTSMFgnQTVYLWLLNTSGmtGF 383

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 395 VAFMFVSIAMYRLRK---REGNDLPVPGFKVPLYPVLPAITFVLVFLVFWGLSYEAKLYTLI-WFVV-----GIVIYL-- 463
Cdd:PRK10836 384 IAWLGIAISHYRFRRgyvLQGHDLNDLPYRSGFFPLGPIFAFVLCLIITLGQNYEAFLKDTIdWGGVaatyiGIPLFLii 463

                        490
                 ....*....|....*
gi 488409180 464 FYGVRHSKKNEEPEY 478
Cdd:PRK10836 464 WFGYKLIKGTHFVRY 478
PRK11049 PRK11049
D-alanine/D-serine/glycine permease; Provisional
 190-468 1.40e-07

D-alanine/D-serine/glycine permease; Provisional


Pssm-ID: 236830  Cd Length: 469  Bit Score: 53.58  E-value: 1.40e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 190 LKIFAILLFVVVGLTALHVQNYIPFIPEHKVTDTGDFGGW-----QGVYAGVSMIFLAYIGFDSIAANSAEAINPSKTMP 264
Cdd:PRK11049 166 IKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMfpkglSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLP 245

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 265 RGIlGSLVVAIILFVAVALVLV-GMFHYSQYANNAEPVGWALRQSGHGVVAAIVQGISVIGMFTALIGMMLAGSRLLYSF 343
Cdd:PRK11049 246 RAI-NSIPIRIIMFYVFALIVImSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGL 324

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 344 GRDGLLPSWLAKLNHKHLPNRSLIILTIIVVIIGSMFPF------AFlaQLISAGSLVAFMFV------SIAMYRLRK-- 409
Cdd:PRK11049 325 AQEGVAPKAFAKLSKRAVPAKGLTFSCICLLGGVVLLYVnpsvigAF--TLVTTVSAILFMFVwtiilcSYLVYRKQRph 402

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 410 -REGNDLPVPGFKVPLYPVLPAITFVLVFLVFWGLSYEAKLYTLIWFVVGIVIYLFYGVR 468
Cdd:PRK11049 403 lHEKSIYKMPLGKLMCWVCMAFFAFVLVLLTLEDDTRQALIVTPLWFIALGLGYLFIGKK 462
proY PRK10580
putative proline-specific permease; Provisional
 24-362 1.15e-06

putative proline-specific permease; Provisional


Pssm-ID: 182566 [Multi-domain]  Cd Length: 457  Bit Score: 50.97  E-value: 1.15e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180  24 LKRTLRVRDFLALGVGTIVSTSIFtLPGIVAAEHAGPAVALSFLIAAIVAGLVAFTYAEMSSAMPFAGSAYSWVNVLFGE 103
Cdd:PRK10580   7 LKRGLSTRHIRFMALGSAIGTGLF-YGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGP 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 104 FFGWVAGWALLAEYFIAVAFVASGFSANlrglispLGIKLPTslsapfganggiidiIAAVVIILTALLLSRGMTEAA-- 181
Cdd:PRK10580  86 LAGYITGWTYCFEILIVAIADVTAFGIY-------MGVWFPT---------------VPHWIWVLSVVLIICAVNLMSvk 143

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 182 ---RIENILVVLKIFAILLFVV--VGLTALHVQNYIPFIPEHKVTDTGDF--GGWQGVYAGVSMIFLAYIGFDSIAANSA 254
Cdd:PRK10580 144 vfgELEFWFSFFKVATIIIMIVagIGIIIWGIGNGGQPTGIHNLWSNGGFfsNGWLGMVMSLQMVMFAYGGIEIIGITAG 223

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 255 EAINPSKTMPRGILGSLVVAIILFVAVALVLVGMFHYSQYANNAEPVGWALRQSGHGVVAAIVQGISVIGMFTALIGMML 334
Cdd:PRK10580 224 EAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVF 303

                        330       340
                 ....*....|....*....|....*...
gi 488409180 335 AGSRLLYSFGRDGLLPSWLAKLNHKHLP 362
Cdd:PRK10580 304 GVGRMLHGMAEQGSAPKIFSKTSRRGIP 331
AA_permease_C pfam13906
C-terminus of AA_permease; This is the C-terminus of AA-permease enzymes that is not captured ...
 420-470 2.42e-06

C-terminus of AA_permease; This is the C-terminus of AA-permease enzymes that is not captured by the models pfam00324 and pfam13520.


Pssm-ID: 464034  Cd Length: 51  Bit Score: 44.50  E-value: 2.42e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 488409180  420 FKVPLYPVLPAIT-FVLVFLVFwGLSYEAKLYTLIWFVVGIVIYLFYGVRHS 470
Cdd:pfam13906   1 FKVPLVPFLPALSiLVNIYLMV-QLDSLTWIRFGIWMLIGLLIYFGYGIRHS 51
potE PRK10655
putrescine transporter; Provisional
 230-362 2.12e-05

putrescine transporter; Provisional


Pssm-ID: 182622  Cd Length: 438  Bit Score: 46.95  E-value: 2.12e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 230 QGVYAGVSMIFLAYIGFDSIAANSAEAINPSKTMPRGILGSLVVAIILFVAVALVLVGMFHYSQYANNAEPVGWALRQSG 309
Cdd:PRK10655 189 SAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMF 268

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 488409180 310 HGVVAAIVQGISVIGMFTALIGMMLAGSRLLYSFGRDGLLPSWLAKLNHKHLP 362
Cdd:PRK10655 269 NPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKIFSRVTKVDAP 321
cadB PRK10435
cadaverine/lysine antiporter;
242-336 2.29e-03

cadaverine/lysine antiporter;


Pssm-ID: 182458  Cd Length: 435  Bit Score: 40.50  E-value: 2.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409180 242 AYIGFDSIAANSAEAINPSKTMPRGILGSLVVAIILFVAVALVLVGMFHYSQYANNAEPVGWALRQSGHGVVAAIVQGIS 321
Cdd:PRK10435 199 AFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFT 278

                         90
                 ....*....|....*.
gi 488409180 322 VIGMFTALIG-MMLAG 336
Cdd:PRK10435 279 AFACLTSLGSwMMLVG 294
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH