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Conserved domains on  [gi|488409023|ref|WP_002478408|]
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MULTISPECIES: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus]

Protein Classification

UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase( domain architecture ID 11487059)

UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase catalyzes the addition of L-lysine to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK14022 PRK14022
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase;
1-489 0e+00

UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase;


:

Pssm-ID: 237588 [Multi-domain]  Cd Length: 481  Bit Score: 743.39  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023   1 MNASTLFEKIRVKQVIGTLDR-----------HVTDITTDSRTAKSGSIFVASKGYTvdSHKFCQDVINQGCQIIVVKSK 69
Cdd:PRK14022   1 ITIETLLDILKKDHNFREIIDqdhyhynysgvQFDDISYDSRTADEGTLFFAKGAYF--KHKFLQNAITQGLKLYVSEKD 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  70 QEVegDVTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLHKNSAYLGTNGFQINEQKTKG 149
Cdd:PRK14022  79 YEV--GIPQVIVPDIKKAMSLIAMEFYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTLDGETFFKS 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 150 ANTTPETVSLTKKIKEAVDAGAEAMTMEVSSHGLALGRLRGVEFDVAIFSNLTQDHLDF--HGTMEAYGHAKSLLfsqlg 227
Cdd:PRK14022 157 ALTTPESLDLFKMMAEAVDNGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNITPDHIGPieHPTFEDYFYHKRLL----- 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 228 edLSKEKYVVLNND-DAFSEYLASVTPYEIFTYGIDNDAQFKAIHineslqgvTFELDT---PFGNYNVQspYVGKFNIS 303
Cdd:PRK14022 232 --MENSKAVVVNSDmDHFSELLEQVTPQEHDFYGIDSENQIMASN--------AFSFEAtgkLAGTYDIQ--LIGKFNQE 299
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 304 NLMAAMIAVWSKGIPFETIVEAVKTlEPVEGRLEVLDPNLPIDLIIDYAHTADGMNKLIDAVKPFVKRKLIFLVGMAGER 383
Cdd:PRK14022 300 NAMAAGLACLRLGASLEDIQKGIAQ-TPVPGRMEVLTQSNGAKVFIDYAHNGDSLNKLIDVVEEHQKGKLILLLGAAGNK 378
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 384 DLTKTPEMGTVACRADY--VIFTPDNPANDDPKMLTSELAKGATHdnYVE-FEDRAEGIRHAIEVAE-PGDTVVLASKGR 459
Cdd:PRK14022 379 GESRRPDFGRVANRHPYlqVILTADDPNNEDPKMITQEIASHITH--PVEiIDDRAEAIKHAMSITEgPGDAVIIAGKGA 456
                        490       500       510
                 ....*....|....*....|....*....|
gi 488409023 460 EPYQIMPGhvkvpHRDDLIGLEAAYKKFGG 489
Cdd:PRK14022 457 DAYQIVPG-----HRDDYIGDEAAAKKYLG 481
 
Name Accession Description Interval E-value
PRK14022 PRK14022
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase;
1-489 0e+00

UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase;


Pssm-ID: 237588 [Multi-domain]  Cd Length: 481  Bit Score: 743.39  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023   1 MNASTLFEKIRVKQVIGTLDR-----------HVTDITTDSRTAKSGSIFVASKGYTvdSHKFCQDVINQGCQIIVVKSK 69
Cdd:PRK14022   1 ITIETLLDILKKDHNFREIIDqdhyhynysgvQFDDISYDSRTADEGTLFFAKGAYF--KHKFLQNAITQGLKLYVSEKD 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  70 QEVegDVTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLHKNSAYLGTNGFQINEQKTKG 149
Cdd:PRK14022  79 YEV--GIPQVIVPDIKKAMSLIAMEFYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTLDGETFFKS 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 150 ANTTPETVSLTKKIKEAVDAGAEAMTMEVSSHGLALGRLRGVEFDVAIFSNLTQDHLDF--HGTMEAYGHAKSLLfsqlg 227
Cdd:PRK14022 157 ALTTPESLDLFKMMAEAVDNGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNITPDHIGPieHPTFEDYFYHKRLL----- 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 228 edLSKEKYVVLNND-DAFSEYLASVTPYEIFTYGIDNDAQFKAIHineslqgvTFELDT---PFGNYNVQspYVGKFNIS 303
Cdd:PRK14022 232 --MENSKAVVVNSDmDHFSELLEQVTPQEHDFYGIDSENQIMASN--------AFSFEAtgkLAGTYDIQ--LIGKFNQE 299
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 304 NLMAAMIAVWSKGIPFETIVEAVKTlEPVEGRLEVLDPNLPIDLIIDYAHTADGMNKLIDAVKPFVKRKLIFLVGMAGER 383
Cdd:PRK14022 300 NAMAAGLACLRLGASLEDIQKGIAQ-TPVPGRMEVLTQSNGAKVFIDYAHNGDSLNKLIDVVEEHQKGKLILLLGAAGNK 378
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 384 DLTKTPEMGTVACRADY--VIFTPDNPANDDPKMLTSELAKGATHdnYVE-FEDRAEGIRHAIEVAE-PGDTVVLASKGR 459
Cdd:PRK14022 379 GESRRPDFGRVANRHPYlqVILTADDPNNEDPKMITQEIASHITH--PVEiIDDRAEAIKHAMSITEgPGDAVIIAGKGA 456
                        490       500       510
                 ....*....|....*....|....*....|
gi 488409023 460 EPYQIMPGhvkvpHRDDLIGLEAAYKKFGG 489
Cdd:PRK14022 457 DAYQIVPG-----HRDDYIGDEAAAKKYLG 481
MurE COG0769
UDP-N-acetylmuramyl tripeptide synthase [Cell wall/membrane/envelope biogenesis]; ...
25-475 0e+00

UDP-N-acetylmuramyl tripeptide synthase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramyl tripeptide synthase is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440532 [Multi-domain]  Cd Length: 459  Bit Score: 550.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  25 DITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVV-KSKQEVEGDVTQIIVSETLRVASLLAHTLFDFPSHQL 103
Cdd:COG0769    1 GITYDSRKVKPGDLFVALPGARVDGHDFIAQAIARGAVAVVTeAPGALLAAGVPVIVVPDPRAALALLAAAFYGHPSQKL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 104 TTYGVTGTNGKTSIATMIHLIYRKLHKNSAYLGTNGFQINEQKTKGANTTPETVSLTKKIKEAVDAGAEAMTMEVSSHGL 183
Cdd:COG0769   81 KLIGVTGTNGKTTTTYLLAQILRALGKKTGLIGTVGNGIGGELIPSSLTTPEALDLQRLLAEMVDAGVTHVVMEVSSHAL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 184 ALGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDlskeKYVVLNNDDAFSEYLASVTPYEIFTYGIDN 263
Cdd:COG0769  161 DQGRVDGVRFDVAVFTNLTRDHLDYHGTMEAYFAAKARLFDQLGPG----GAAVINADDPYGRRLAAAAPARVITYGLKA 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 264 DAQFKAIHINESLQGVTFELDTPFGNYNVQSPYVGKFNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEGRLEVLDPNL 343
Cdd:COG0769  237 DADLRATDIELSADGTRFTLVTPGGEVEVRLPLIGRFNVYNALAAIAAALALGIDLEEILAALEKLKGVPGRMERVDGGQ 316
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 344 PIDLIIDYAHTADGMNKLIDAVKPFVKRKLIFLVGMAGERDLTKTPEMGTVACR-ADYVIFTPDNPANDDPKMLTSELAK 422
Cdd:COG0769  317 GPTVIVDYAHTPDALENVLEALRPHTKGRLIVVFGCGGDRDRGKRPLMGEIAARlADVVIVTSDNPRSEDPAAIIADILA 396
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....
gi 488409023 423 GATH-DNYVEFEDRAEGIRHAIEVAEPGDTVVLASKGREPYQIMpGHVKVPHRD 475
Cdd:COG0769  397 GIPGaGKVLVIPDRAEAIRYAIALAKPGDVVLIAGKGHETYQII-GGVKIPFDD 449
murE TIGR01085
UDP-N-acetylmuramyl-tripeptide synthetase; Most members of this family are EC 6.3.2.13, ...
20-475 1.24e-146

UDP-N-acetylmuramyl-tripeptide synthetase; Most members of this family are EC 6.3.2.13, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase. An exception is Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is EC 6.3.2.7. The Mycobacteria, part of the closest neighboring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273435 [Multi-domain]  Cd Length: 464  Bit Score: 427.89  E-value: 1.24e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023   20 DRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVV--KSKQEVEGdVTQIIVSETLRVASLLAHTLFD 97
Cdd:TIGR01085   1 DLEVTGLTLDSREVKPGDLFVAIKGTHVDGHDFIHDAIANGAVAVVVerDVDFYVAP-VPVIIVPDLRHALSSLAAAFYG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023   98 FPSHQLTTYGVTGTNGKTSIATMIHLIYRKLHKNSAYLGTNGFQINEQ---KTKGANTTPETVSLTKKIKEAVDAGAEAM 174
Cdd:TIGR01085  80 HPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNdliKNPAALTTPEALTLQSTLAEMVEAGAQYA 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  175 TMEVSSHGLALGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKekyvVLNNDDAFSEYLASVTPY 254
Cdd:TIGR01085 160 VMEVSSHALAQGRVRGVRFDAAVFTNLSRDHLDFHGTMENYFAAKASLFTELGLKRFA----VINLDDEYGAQFVKRLPK 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  255 EIFTYGIDNDAQFKA-----IHINESLQGVTFELDTPFGNYNVQSPYVGKFNISNLMAAMIAVWS-KGIPFETIVEAVKT 328
Cdd:TIGR01085 236 DITVSAITQPADGRAqdikiTDSGYSFEGQQFTFETPAGEGHLHTPLIGRFNVYNLLAALATLLHlGGIDLEDIVAALEK 315
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  329 LEPVEGRLEVLDPNLPIDLIIDYAHTADGMNKLIDAVKPFVKRKLIFLVGMAGERDLTKTPEMGTVACR-ADYVIFTPDN 407
Cdd:TIGR01085 316 FRGVPGRMELVDGGQKFLVIVDYAHTPDALEKALRTLRKHKDGRLIVVFGCGGDRDRGKRPLMGAIAEQlADLVILTSDN 395
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488409023  408 PANDDPKMLTSELAKGATHDNYVEFE-DRAEGIRHAIEVAEPGDTVVLASKGREPYQIMpGHVKVPHRD 475
Cdd:TIGR01085 396 PRGEDPEQIIADILAGISEKEKVVIIaDRRQAIRYAISNAKAGDVVLIAGKGHEDYQII-GGETIPFDD 463
Mur_ligase_M pfam08245
Mur ligase middle domain;
108-312 3.79e-65

Mur ligase middle domain;


Pssm-ID: 462409 [Multi-domain]  Cd Length: 199  Bit Score: 209.08  E-value: 3.79e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  108 VTGTNGKTSIATMIHLIYRKLhknSAYLGTNGFQINEQKtkgaNTTPETVSLTKKIKEAVDAGAEAMTMEVSSHGLALGR 187
Cdd:pfam08245   1 VTGTNGKTTTTELIAAILSLA---GGVIGTIGTYIGKSG----NTTNNAIGLPLTLAEMVEAGAEYAVLEVSSHGLGEGR 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  188 LRG-VEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLskekYVVLNNDDAFSEYL---ASVTPYEIFTYGIDN 263
Cdd:pfam08245  74 LSGlLKPDIAVFTNISPDHLDFHGTMENYAKAKAELFEGLPEDG----IAVINADDPYGAFLiakLKKAGVRVITYGIEG 149
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 488409023  264 DAQFKAIHINESLQGVTFEL-DTPFGNYNVQSPYVGKFNISNLMAAMIAV 312
Cdd:pfam08245 150 EADLRAANIELSSDGTSFDLfTVPGGELEIEIPLLGRHNVYNALAAIAAA 199
F430_CfbE NF033197
coenzyme F430 synthase; Members of this family are coenzyme F430 synthase, involving in ...
108-457 3.31e-06

coenzyme F430 synthase; Members of this family are coenzyme F430 synthase, involving in synthesizing coenzyme F430, which is used in methanogens by coenzyme M reductase. Members of this family are restricted to archaeal methanogens, and resemble (and may be misannotated as) MurD, an enzyme of bacterial cell wall biosynthesis.


Pssm-ID: 467992 [Multi-domain]  Cd Length: 419  Bit Score: 49.25  E-value: 3.31e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 108 VTGTNGKTSIATMIHLIYRK----LHKNS-AYLGTNGFQINeqktKGANTTPETVSLTKKIKEAVDAGAEAMTMEVSshg 182
Cdd:NF033197  97 ITGVKGKTTTAELLAHILSDeyvlLHTSRgTERYPEGELSN----KGSITPASILNALELAEEIGIDDYGFLIFEVS--- 169
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 183 laLGRLrgVEFDVAIFSNLTQDHLDFHGTMEAYgHAKSLLFSqlgedLSKEKYVVLNNDDAfseYLASVTPYEIFTYGID 262
Cdd:NF033197 170 --LGGT--GAGDVGIITNILEDYPIAGGKRSAS-AAKLQSLK-----NAKVGSINVADLGI---YINGKNKLVITVAGVE 236
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 263 ndaqfkaihineslqgvTFELDTPFGNYNVQ----SPYV-GKFNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEGRLE 337
Cdd:NF033197 237 -----------------ILSKYPLRFKYGNTefefNPLLfGPHYRENSLFAIEAALNLGVDPEDIISALKGFKGLPGRMA 299
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 338 V----------------------------LDPNLPIDLII--DYAHTADGMN--KLIDAVKPF-VKRKLIFLVGmagerd 384
Cdd:NF033197 300 VkkeggvvivdninpglnvkaieyalddaLELLGDGTLVIggDFGVVCEEIDidKLSEVLKKYrPKIDILVGVG------ 373
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488409023 385 ltktPEMGTvacradyviftpdnpanddpkmltsELAKGATHDNYVEFEDRAEGIRHAIEVAEPGDTVVLASK 457
Cdd:NF033197 374 ----TELGK-------------------------RLKKYLDKLEGYEAGTLEEGLDDARELTGEGNTLVIYRK 417
 
Name Accession Description Interval E-value
PRK14022 PRK14022
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase;
1-489 0e+00

UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase;


Pssm-ID: 237588 [Multi-domain]  Cd Length: 481  Bit Score: 743.39  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023   1 MNASTLFEKIRVKQVIGTLDR-----------HVTDITTDSRTAKSGSIFVASKGYTvdSHKFCQDVINQGCQIIVVKSK 69
Cdd:PRK14022   1 ITIETLLDILKKDHNFREIIDqdhyhynysgvQFDDISYDSRTADEGTLFFAKGAYF--KHKFLQNAITQGLKLYVSEKD 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  70 QEVegDVTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLHKNSAYLGTNGFQINEQKTKG 149
Cdd:PRK14022  79 YEV--GIPQVIVPDIKKAMSLIAMEFYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTLDGETFFKS 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 150 ANTTPETVSLTKKIKEAVDAGAEAMTMEVSSHGLALGRLRGVEFDVAIFSNLTQDHLDF--HGTMEAYGHAKSLLfsqlg 227
Cdd:PRK14022 157 ALTTPESLDLFKMMAEAVDNGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNITPDHIGPieHPTFEDYFYHKRLL----- 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 228 edLSKEKYVVLNND-DAFSEYLASVTPYEIFTYGIDNDAQFKAIHineslqgvTFELDT---PFGNYNVQspYVGKFNIS 303
Cdd:PRK14022 232 --MENSKAVVVNSDmDHFSELLEQVTPQEHDFYGIDSENQIMASN--------AFSFEAtgkLAGTYDIQ--LIGKFNQE 299
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 304 NLMAAMIAVWSKGIPFETIVEAVKTlEPVEGRLEVLDPNLPIDLIIDYAHTADGMNKLIDAVKPFVKRKLIFLVGMAGER 383
Cdd:PRK14022 300 NAMAAGLACLRLGASLEDIQKGIAQ-TPVPGRMEVLTQSNGAKVFIDYAHNGDSLNKLIDVVEEHQKGKLILLLGAAGNK 378
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 384 DLTKTPEMGTVACRADY--VIFTPDNPANDDPKMLTSELAKGATHdnYVE-FEDRAEGIRHAIEVAE-PGDTVVLASKGR 459
Cdd:PRK14022 379 GESRRPDFGRVANRHPYlqVILTADDPNNEDPKMITQEIASHITH--PVEiIDDRAEAIKHAMSITEgPGDAVIIAGKGA 456
                        490       500       510
                 ....*....|....*....|....*....|
gi 488409023 460 EPYQIMPGhvkvpHRDDLIGLEAAYKKFGG 489
Cdd:PRK14022 457 DAYQIVPG-----HRDDYIGDEAAAKKYLG 481
MurE COG0769
UDP-N-acetylmuramyl tripeptide synthase [Cell wall/membrane/envelope biogenesis]; ...
25-475 0e+00

UDP-N-acetylmuramyl tripeptide synthase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramyl tripeptide synthase is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440532 [Multi-domain]  Cd Length: 459  Bit Score: 550.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  25 DITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVV-KSKQEVEGDVTQIIVSETLRVASLLAHTLFDFPSHQL 103
Cdd:COG0769    1 GITYDSRKVKPGDLFVALPGARVDGHDFIAQAIARGAVAVVTeAPGALLAAGVPVIVVPDPRAALALLAAAFYGHPSQKL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 104 TTYGVTGTNGKTSIATMIHLIYRKLHKNSAYLGTNGFQINEQKTKGANTTPETVSLTKKIKEAVDAGAEAMTMEVSSHGL 183
Cdd:COG0769   81 KLIGVTGTNGKTTTTYLLAQILRALGKKTGLIGTVGNGIGGELIPSSLTTPEALDLQRLLAEMVDAGVTHVVMEVSSHAL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 184 ALGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDlskeKYVVLNNDDAFSEYLASVTPYEIFTYGIDN 263
Cdd:COG0769  161 DQGRVDGVRFDVAVFTNLTRDHLDYHGTMEAYFAAKARLFDQLGPG----GAAVINADDPYGRRLAAAAPARVITYGLKA 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 264 DAQFKAIHINESLQGVTFELDTPFGNYNVQSPYVGKFNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEGRLEVLDPNL 343
Cdd:COG0769  237 DADLRATDIELSADGTRFTLVTPGGEVEVRLPLIGRFNVYNALAAIAAALALGIDLEEILAALEKLKGVPGRMERVDGGQ 316
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 344 PIDLIIDYAHTADGMNKLIDAVKPFVKRKLIFLVGMAGERDLTKTPEMGTVACR-ADYVIFTPDNPANDDPKMLTSELAK 422
Cdd:COG0769  317 GPTVIVDYAHTPDALENVLEALRPHTKGRLIVVFGCGGDRDRGKRPLMGEIAARlADVVIVTSDNPRSEDPAAIIADILA 396
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....
gi 488409023 423 GATH-DNYVEFEDRAEGIRHAIEVAEPGDTVVLASKGREPYQIMpGHVKVPHRD 475
Cdd:COG0769  397 GIPGaGKVLVIPDRAEAIRYAIALAKPGDVVLIAGKGHETYQII-GGVKIPFDD 449
murE PRK00139
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
20-482 1.32e-159

UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional


Pssm-ID: 234660 [Multi-domain]  Cd Length: 460  Bit Score: 460.75  E-value: 1.32e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  20 DRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVKSKQEVEGDVTQIIVSETLRVASLLAHTLFDFP 99
Cdd:PRK00139  12 PVEITGLTYDSRKVKPGDLFVALPGHKVDGRDFIAQAIANGAAAVVAEADGEAGTGVPVIIVPDLRKALALLAAAFYGHP 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 100 SHQLTTYGVTGTNGKTSIATMIHLIYRKLHKNSAYLGTNGFQINEQKTKGANTTPETVSLTKKIKEAVDAGAEAMTMEVS 179
Cdd:PRK00139  92 SDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLGNGIGGELIPSGLTTPDALDLQRLLAELVDAGVTYAAMEVS 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 180 SHGLALGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGedlskeKYVVLNNDDAFSEYLASVTpyeiFTY 259
Cdd:PRK00139 172 SHALDQGRVDGLKFDVAVFTNLSRDHLDYHGTMEDYLAAKARLFSELG------LAAVINADDEVGRRLLALP----DAY 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 260 GID-NDAQFKAIHINESLQGVTFELDTPFgnynvQSPYVGKFNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEGRLEV 338
Cdd:PRK00139 242 AVSmAGADLRATDVEYTDSGQTFTLVTEV-----ESPLIGRFNVSNLLAALAALLALGVPLEDALAALAKLQGVPGRMER 316
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 339 LDPNLPIDLIIDYAHTADGMNKLIDAVKPFVKRKLIFLVGMAGERDLTKTPEMGTVACR-ADYVIFTPDNPANDDPKMLT 417
Cdd:PRK00139 317 VDAGQGPLVIVDYAHTPDALEKVLEALRPHAKGRLICVFGCGGDRDKGKRPLMGAIAERlADVVIVTSDNPRSEDPAAII 396
                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488409023 418 SELAKGAthdnYVEFEDRAEGIRHAIEVAEPGDTVVLASKGREPYQIMpGHVKVPHRDDLIGLEA 482
Cdd:PRK00139 397 ADILAGI----YDVIEDRAEAIRYAIAQAKPGDVVLIAGKGHEDYQII-GGVKIPFDDREVAREA 456
murE TIGR01085
UDP-N-acetylmuramyl-tripeptide synthetase; Most members of this family are EC 6.3.2.13, ...
20-475 1.24e-146

UDP-N-acetylmuramyl-tripeptide synthetase; Most members of this family are EC 6.3.2.13, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase. An exception is Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is EC 6.3.2.7. The Mycobacteria, part of the closest neighboring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273435 [Multi-domain]  Cd Length: 464  Bit Score: 427.89  E-value: 1.24e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023   20 DRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVV--KSKQEVEGdVTQIIVSETLRVASLLAHTLFD 97
Cdd:TIGR01085   1 DLEVTGLTLDSREVKPGDLFVAIKGTHVDGHDFIHDAIANGAVAVVVerDVDFYVAP-VPVIIVPDLRHALSSLAAAFYG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023   98 FPSHQLTTYGVTGTNGKTSIATMIHLIYRKLHKNSAYLGTNGFQINEQ---KTKGANTTPETVSLTKKIKEAVDAGAEAM 174
Cdd:TIGR01085  80 HPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNdliKNPAALTTPEALTLQSTLAEMVEAGAQYA 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  175 TMEVSSHGLALGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKekyvVLNNDDAFSEYLASVTPY 254
Cdd:TIGR01085 160 VMEVSSHALAQGRVRGVRFDAAVFTNLSRDHLDFHGTMENYFAAKASLFTELGLKRFA----VINLDDEYGAQFVKRLPK 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  255 EIFTYGIDNDAQFKA-----IHINESLQGVTFELDTPFGNYNVQSPYVGKFNISNLMAAMIAVWS-KGIPFETIVEAVKT 328
Cdd:TIGR01085 236 DITVSAITQPADGRAqdikiTDSGYSFEGQQFTFETPAGEGHLHTPLIGRFNVYNLLAALATLLHlGGIDLEDIVAALEK 315
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  329 LEPVEGRLEVLDPNLPIDLIIDYAHTADGMNKLIDAVKPFVKRKLIFLVGMAGERDLTKTPEMGTVACR-ADYVIFTPDN 407
Cdd:TIGR01085 316 FRGVPGRMELVDGGQKFLVIVDYAHTPDALEKALRTLRKHKDGRLIVVFGCGGDRDRGKRPLMGAIAEQlADLVILTSDN 395
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488409023  408 PANDDPKMLTSELAKGATHDNYVEFE-DRAEGIRHAIEVAEPGDTVVLASKGREPYQIMpGHVKVPHRD 475
Cdd:TIGR01085 396 PRGEDPEQIIADILAGISEKEKVVIIaDRRQAIRYAISNAKAGDVVLIAGKGHEDYQII-GGETIPFDD 463
PRK11929 PRK11929
bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE ...
23-492 7.13e-121

bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF;


Pssm-ID: 237025 [Multi-domain]  Cd Length: 958  Bit Score: 376.74  E-value: 7.13e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  23 VTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVKSK---QEVEGDVTQIIVSETLRVASLLAHTLFDFP 99
Cdd:PRK11929  29 TADLRLDSREVQPGDLFVACRGAASDGRAFIDQALARGAAAVLVEAEgedQVAAADALVLPVADLRKALGELAARWYGRP 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 100 SHQLTTYGVTGTNGKTSIATMIHLIYRKLHKNSAYLGTNGFQINEQKTKGANTTPETVSLTKKIKEAVDAGAEAMTMEVS 179
Cdd:PRK11929 109 SEQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLGARLDGRLIPGSLTTPDAIILHRILARMRAAGADAVAMEAS 188
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 180 SHGLALGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDlskeKYVVLNNDDAFSEYLASVTPY--EIF 257
Cdd:PRK11929 189 SHGLEQGRLDGLRIAVAGFTNLTRDHLDYHGTMQDYEEAKAALFSKLPGL----GAAVINADDPAAARLLAALPRglKVG 264
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 258 TYGIDNDAQFKAIHINESLQGVTFELDTPFGNYNVQSPYVGKFNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEGRLE 337
Cdd:PRK11929 265 YSPQNAGADVQARDLRATAHGQVFTLATPDGSYQLVTRLLGRFNVSNLLLVAAALKKLGLPLAQIARALAAVSPVPGRME 344
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 338 VLDP----NLPiDLIIDYAHTADGMNKLIDAVKP---FVKRKLIFLVGMAGERDLTKTPEMGTVACR-ADYVIFTPDNPA 409
Cdd:PRK11929 345 RVGPtagaQGP-LVVVDYAHTPDALAKALTALRPvaqARNGRLVCVFGCGGDRDKGKRPEMGRIAAElADRVVVTSDNPR 423
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 410 NDDPKMLTSELAKGATH-DNYVEFEDRAEGIRHAIEVAEPGDTVVLASKGREPYQIMPGHvKVPHRDDLIGLEAAYKKFG 488
Cdd:PRK11929 424 SEAPEAIIDQILAGIPAgARVFVISDRAEAIRQAIWMAAPGDVILIAGKGHETYQEIGGR-KLFFDDREWARRALLARIS 502

                 ....
gi 488409023 489 GGPV 492
Cdd:PRK11929 503 STLI 506
Mur_ligase_M pfam08245
Mur ligase middle domain;
108-312 3.79e-65

Mur ligase middle domain;


Pssm-ID: 462409 [Multi-domain]  Cd Length: 199  Bit Score: 209.08  E-value: 3.79e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  108 VTGTNGKTSIATMIHLIYRKLhknSAYLGTNGFQINEQKtkgaNTTPETVSLTKKIKEAVDAGAEAMTMEVSSHGLALGR 187
Cdd:pfam08245   1 VTGTNGKTTTTELIAAILSLA---GGVIGTIGTYIGKSG----NTTNNAIGLPLTLAEMVEAGAEYAVLEVSSHGLGEGR 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  188 LRG-VEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLskekYVVLNNDDAFSEYL---ASVTPYEIFTYGIDN 263
Cdd:pfam08245  74 LSGlLKPDIAVFTNISPDHLDFHGTMENYAKAKAELFEGLPEDG----IAVINADDPYGAFLiakLKKAGVRVITYGIEG 149
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 488409023  264 DAQFKAIHINESLQGVTFEL-DTPFGNYNVQSPYVGKFNISNLMAAMIAV 312
Cdd:pfam08245 150 EADLRAANIELSSDGTSFDLfTVPGGELEIEIPLLGRHNVYNALAAIAAA 199
MurF COG0770
UDP-N-acetylmuramyl pentapeptide synthase [Cell wall/membrane/envelope biogenesis]; ...
14-458 9.10e-47

UDP-N-acetylmuramyl pentapeptide synthase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramyl pentapeptide synthase is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440533 [Multi-domain]  Cd Length: 451  Bit Score: 168.36  E-value: 9.10e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  14 QVIGTLDRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVKskQEVEGDVTQIIVSETLRVASLLAH 93
Cdd:COG0770   15 RLIGDPDLVVTGVSTDSRKIKPGDLFVALKGERFDGHDFVAQALAKGAAAALVS--RPLPADLPLIVVDDTLKALQQLAA 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  94 TLFDfpSHQLTTYGVTGTNGKTSIATMIHLIyrklhknsayLGTNGfqiNEQKTKG------------ANTTPETvsltk 161
Cdd:COG0770   93 AHRA--RFNIPVIAITGSNGKTTTKEMLAAV----------LSTKG---KVLATPGnfnneigvpltlLRLPEDH----- 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 162 kikEA--VDAGAeamtmevsSH-G--LALGRLrgVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFsqlgEDLSKEKYV 236
Cdd:COG0770  153 ---EFavLEMGM--------NHpGeiAYLARI--ARPDIAVITNIGPAHLEGFGSLEGIARAKGEIF----EGLPPGGVA 215
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 237 VLNNDDAFSEYLASVTPYEIFTYGIDNDAQFKAIHINESLQGVTFELDTPFGNYNVQSPYVGKFNISNLMAAMIAVWSKG 316
Cdd:COG0770  216 VLNADDPLLAALAERAKARVLTFGLSEDADVRAEDIELDEDGTRFTLHTPGGELEVTLPLPGRHNVSNALAAAAVALALG 295
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 317 IPFETIVEAVKTLEPVEGRLEV--LDPNLpidLIIDYAHTA--DGMNKLIDAVK--PFVKRKLIFLVGMAgerdltktpE 390
Cdd:COG0770  296 LDLEEIAAGLAAFQPVKGRLEVieGAGGV---TLIDDSYNAnpDSMKAALDVLAqlPGGGRRIAVLGDML---------E 363
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 391 MGT-------------VACRADYVIFTPDnpanddpkmLTSELAKGATHDNYVEFEDRAEGIRHAIEVAEPGDTVVL-AS 456
Cdd:COG0770  364 LGEeseelhrevgelaAELGIDRLFTVGE---------LARAIAEAAGGERAEHFEDKEELLAALKALLRPGDVVLVkGS 434

                 ..
gi 488409023 457 KG 458
Cdd:COG0770  435 RG 436
murF TIGR01143
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; This family consists of the ...
28-458 3.73e-37

UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273468 [Multi-domain]  Cd Length: 417  Bit Score: 141.25  E-value: 3.73e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023   28 TDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVKSKQEVEGDVTQIIVSETLRVASLLAHTLF-DFPShqlTTY 106
Cdd:TIGR01143   1 TDSRAIKPGDLFIALKGERFDGHDFVEQALAAGAVAVVVDREVGPDNGLPQILVDDTLEALQALARAKRaKFSG---KVI 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  107 GVTGTNGKTSIATMIHLIyrkLHKNSAYLGTNGFQINEQktkganTTPETV-SLTKKIKEAVdagaeaMTMEVSSHG--L 183
Cdd:TIGR01143  78 GITGSSGKTTTKEMLAAI---LSHKYKVFATPGNFNNEI------GLPLTLlRAPGDHDYAV------LEMGASHPGeiA 142
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  184 ALGRLrgVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQlgedLSKEKYVVLNNDDAFSEYLASVTPY-EIFTYGId 262
Cdd:TIGR01143 143 YLAEI--AKPDIAVITNIGPAHLEGFGSLEGIAEAKGEILQG----LKENGIAVINADDPAFADLAKRLPNrNILSFGF- 215
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  263 NDAQFKAIHINESLQGVT-FELDTPFGNYNVQSPYVGKFNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEGRLEVL-D 340
Cdd:TIGR01143 216 EGGDFVAKDISYSALGSTsFTLVAPGGEFEVSLPLLGRHNVMNALAAAALALELGIPLEEIAEGLAELKLVKGRFEVQtK 295
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  341 PNLpidLIIDYAHTA--DGMNKLIDAVKPFvKRKLIFLVG-MA--GERDLTKTPEMGTVACRA--DYVIFTPdnpanDDP 413
Cdd:TIGR01143 296 NGL---TLIDDTYNAnpDSMRAALDALARF-PGKKILVLGdMAelGEYSEELHAEVGRYANSLgiDLVFLVG-----EEA 366
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*.
gi 488409023  414 KMLTSELAKGATHdnyveFEDRAEGIRHAIEVAEPGDTVVL-ASKG 458
Cdd:TIGR01143 367 AVIYDSFGKQGKH-----FADKDELLAFLKTLVRKGDVVLVkGSRS 407
PRK11929 PRK11929
bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE ...
11-382 1.65e-29

bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF;


Pssm-ID: 237025 [Multi-domain]  Cd Length: 958  Bit Score: 122.89  E-value: 1.65e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  11 RVKQVIGTLDRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVkSKQEVEGDVTQIIVSETLRVASL 90
Cdd:PRK11929 514 GSNSLQINSLPHAGAVSTDSRSVGRGELFVALRGENFDGHDYLPQAFAAGACAAVV-ERQVADVDLPQIVVDDTRAALGR 592
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  91 LAHTLfdfpSHQLT--TYGVTGTNGKTSIATMIHLIYRKLHKNSAYLGTNGFQINEQKtkganttpetVSLTK-KIKEAV 167
Cdd:PRK11929 593 LATAW----RARFSlpVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIG----------VPLTLlRLRAQH 658
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 168 DAGAEAMTMevsSHGLALGRLRG-VEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDlskeKYVVLNNDDAF-S 245
Cdd:PRK11929 659 RAAVFELGM---NHPGEIAYLAAiAAPTVALVTNAQREHQEFMHSVEAVARAKGEIIAALPED----GVAVVNGDDPYtA 731
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 246 EYLASVTPYEIFTYGIDNDA-----QFKAIHINESLQGVTFELDTPFGNYNVQSPYVGKFNISNLMAAMIAVWSKGIPFE 320
Cdd:PRK11929 732 IWAKLAGARRVLRFGLQPGAdvyaeKIAKDISVGEAGGTRCQVVTPAGSAEVYLPLIGEHNLRNALAAIACALAAGASLK 811
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488409023 321 TIVEAVKTLEPVEGRLEVLDPNLPIDLIID-YAHTADGMNKLIDAVK--PFVKRKLIflVGMAGE 382
Cdd:PRK11929 812 QIRAGLERFQPVAGRMQRRRLSCGTRIIDDtYNANPDSMRAAIDVLAelPNGPRALV--LGDMLE 874
MurD COG0771
UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; ...
107-455 9.83e-28

UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramoylalanine-D-glutamate ligase is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440534 [Multi-domain]  Cd Length: 445  Bit Score: 115.18  E-value: 9.83e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 107 GVTGTNGKTSIATMIHLIYRKLHKNSAYLGTNGfqineqktkganttpetVSLTKKIKEAvdAGAEAMTMEVSSHGLALg 186
Cdd:COG0771  109 AITGTNGKTTTTTLIGHILKAAGLRVAVGGNIG-----------------TPLLDLLLEP--EPPDVYVLELSSFQLET- 168
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 187 rLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDlskeKYVVLNNDDAFSEYLASVTPYEIFTYGID---- 262
Cdd:COG0771  169 -TPSLRPDVAVILNITPDHLDRHGSMEAYAAAKARIFANQTPD----DYAVLNADDPLTRALAEEAKARVVPFSLKeple 243
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 263 NDAQFK--AIHINESLQGVtFELDtpfgnynvQSPYVGKFNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEGRLE-VL 339
Cdd:COG0771  244 GGAGLEdgKLVDRASGEEL-LPVD--------DLRLPGRHNLENALAALAAARALGVPPEAIREALRSFKGLPHRLEfVA 314
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 340 DPN------------------------LPIDLIidyahtADGMNK------LIDAVKPFVKRklIFLVGMAGERdltktp 389
Cdd:COG0771  315 EINgvrfindskatnpdatlaalesfdGPVVLI------AGGLDKgadfspLAPAVAERVKA--VVLIGEDAEK------ 380
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488409023 390 emgtvacradyviftpdnpanddpkmLTSELAKGAThdNYVEFEDRAEGIRHAIEVAEPGDTVVLA 455
Cdd:COG0771  381 --------------------------IAAALAGAGV--PVVIVETMEEAVAAAAELARPGDVVLLS 418
murF PRK10773
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
20-347 5.51e-23

UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed


Pssm-ID: 182718 [Multi-domain]  Cd Length: 453  Bit Score: 101.26  E-value: 5.51e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  20 DRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVKSKQEVegDVTQIIVSETLRVASLLAHtlfdFP 99
Cdd:PRK10773  21 DITIDAVTTDTRKVTPGCLFVALKGERFDAHDFADDAKAAGAGALLVSRPLDI--DLPQLVVKDTRLAFGQLAA----WV 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 100 SHQLTTYGV--TGTNGKTSIATMIHLIYRKLHKNsayLGTNG------------FQINEQK-----TKGANTTPE---TV 157
Cdd:PRK10773  95 RQQVPARVValTGSSGKTSVKEMTAAILRQCGNT---LYTAGnlnndigvpltlLRLTPEHdyaviELGANHQGEiayTV 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 158 SLTKkikeavdagAEAmtmevsshglalgrlrgvefdvAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDlskeKYVV 237
Cdd:PRK10773 172 SLTR---------PEA----------------------ALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPEN----GIAI 216
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 238 LN---NDDA-FSEYLASVTPYEiFTYGIDNDAQFKAIHINESLQGVTFELDTPFGNYNVQSPYVGKFNISNLMAAMIAVW 313
Cdd:PRK10773 217 MNadsNDWLnWQSVIGSKTVWR-FSPNAANSVDFTATNIHVTSHGTEFTLHTPTGSVDVLLPLPGRHNIANALAAAALAM 295
                        330       340       350
                 ....*....|....*....|....*....|....
gi 488409023 314 SKGIPFETIVEAVKTLEPVEGRLevldpnLPIDL 347
Cdd:PRK10773 296 SVGATLDAVKAGLANLKAVPGRL------FPIQL 323
Mur_ligase_C pfam02875
Mur ligase family, glutamate ligase domain; This family contains a number of related ligase ...
332-414 7.51e-23

Mur ligase family, glutamate ligase domain; This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyze consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate.


Pssm-ID: 460731 [Multi-domain]  Cd Length: 87  Bit Score: 92.41  E-value: 7.51e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  332 VEGRLEVLDPNLPIDLIIDYAHTADGMNKLIDAVKPFVKRKLIFLVGMAGERDLTKTPEMGTVACR-ADYVIFTPDNPAN 410
Cdd:pfam02875   1 VPGRLEVVGENNGVLVIDDYAHNPDAMEAALRALRNLFPGRLILVFGGMGDRDAEFHALLGRLAAAlADVVILTGDYPRA 80

                  ....
gi 488409023  411 DDPK 414
Cdd:pfam02875  81 EDPG 84
murD TIGR01087
UDP-N-acetylmuramoylalanine--D-glutamate ligase; [Cell envelope, Biosynthesis and degradation ...
107-455 5.68e-22

UDP-N-acetylmuramoylalanine--D-glutamate ligase; [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273436 [Multi-domain]  Cd Length: 433  Bit Score: 98.18  E-value: 5.68e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  107 GVTGTNGKTSIATMIHLIYRKLHKNsAYLGTNgfqIneqktkganTTPetvsltkkIKEAVD-AGAEAMTMEVSSHGLAl 185
Cdd:TIGR01087 106 AITGTNGKTTTTSLLYHLLKAAGLK-AFLGGN---I---------GTP--------ALEVLDqEGAELYVLELSSFQLE- 163
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  186 gRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDlskeKYVVLNNDDAFSEYLASVTPYEIFTYGIDNDA 265
Cdd:TIGR01087 164 -TTESLRPEIALILNISEDHLDWHGSFEDYVAAKLKIFARQTEG----DVAVLNADDPRFARLAQKSKAQVIWFSVEKDA 238
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  266 QFKAIHINEslqGVTFeldtpFGNyNVQSPYVGKFNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEGRLEVLDPNLPI 345
Cdd:TIGR01087 239 ERGLCIRDG---GLYL-----KPN-DLEGSLLGLHNAENILAAIALAKSLGLNLEAILEALRSFKGLPHRLEYVGQKNGV 309
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  346 DLIIDYAHTADGmnKLIDAVKPFvKRKLIFLV-GMAGERDLtkTPEMGTVACRADYVIFTPDnpanDDPKMLtsELAKGA 424
Cdd:TIGR01087 310 HFYNDSKATNVH--ATLAALSAF-DNPVILIVgGDDKGADF--SPLAPAAAGKVKAVLAIGE----DAAKIA--PLLKEA 378
                         330       340       350
                  ....*....|....*....|....*....|.
gi 488409023  425 THDNYVeFEDRAEGIRHAIEVAEPGDTVVLA 455
Cdd:TIGR01087 379 GLSVYL-VESLEEAVQAAREVASPGDVVLLS 408
murD PRK14106
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
106-454 7.04e-22

UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional


Pssm-ID: 184511 [Multi-domain]  Cd Length: 450  Bit Score: 98.12  E-value: 7.04e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 106 YGVTGTNGKTSIATMIHLIYRKLHKNSAYLGTNGFQIneqktkganttpetvsltkkIKEAVDAGAE-AMTMEVSSHGLA 184
Cdd:PRK14106 111 VAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNIGYPL--------------------IDAVEEYGEDdIIVAEVSSFQLE 170
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 185 LGRlrgvEF--DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFsqlgEDLSKEKYVVLNNDDAFSEYLASVTPYEIFT---- 258
Cdd:PRK14106 171 TIK----EFkpKVGCILNITPDHLDRHKTMENYIKAKARIF----ENQRPSDYTVLNYDDPRTRSLAKKAKARVIFfsrk 242
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 259 ------YGIDND---AQFKA-----IHINEslqgvtfeldtpfgnynVQSPyvGKFNISNLMAAMIAVWSKGIPFETIVE 324
Cdd:PRK14106 243 slleegVFVKNGkivISLGGkeeevIDIDE-----------------IFIP--GEHNLENALAATAAAYLLGISPDVIAN 303
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 325 AVKTLEPVEGRLEVLDPNLPIDLIIDYAHT-ADGMNKLIDAVK-PFVkrkLIflvgmAGERD--LTKTPEMGTVACRADY 400
Cdd:PRK14106 304 TLKTFKGVEHRIEFVAEINGVKFINDSKGTnPDAAIKALEAYEtPIV---LI-----AGGYDkgSDFDEFAKAFKEKVKK 375
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 488409023 401 VIF---TPDNPAnddpkmltsELAKGATHDNYVEFEDRAEGIRHAIEVAEPGDTVVL 454
Cdd:PRK14106 376 LILlgeTAQEIA---------EAARKYGFDNILFAETLEEAVKKAYEIAKPGDVVLL 423
PRK14016 PRK14016
cyanophycin synthetase; Provisional
107-331 1.37e-18

cyanophycin synthetase; Provisional


Pssm-ID: 237586 [Multi-domain]  Cd Length: 727  Bit Score: 89.06  E-value: 1.37e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 107 GVTGTNGKTSIATMIHLIYRKLHKNSAYLGTNGFQINEQKT-KGANTTPE---TVSLTKKIKEAVdagaeamtMEVSSHG 182
Cdd:PRK14016 484 AVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGRLIdKGDCTGPKsarRVLMNPDVEAAV--------LETARGG 555
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 183 LalgrLR-GVEFD---VAIFSNLTQDHLDFHG--TMEAYGHAKSLlfsqLGEDLSKEKYVVLNNDDAFSEYLASVTPYEI 256
Cdd:PRK14016 556 I----LReGLAYDrcdVGVVTNIGEDHLGLGGinTLEDLAKVKRV----VVEAVKPDGYAVLNADDPMVAAMAERCKGKV 627
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 257 FTYGIDNDAQFKAIHINESLQGVTFEldtpfGNY----------------NVQSPYVGK--FNISNLMAAMIAVWSKGIP 318
Cdd:PRK14016 628 IFFSMDPDNPVIAEHRAQGGRAVYVE-----GDYivlaeggweiriislaDIPLTLGGKagFNIENALAAIAAAWALGID 702
                        250
                 ....*....|...
gi 488409023 319 FETIVEAVKTLEP 331
Cdd:PRK14016 703 IELIRAGLRTFVS 715
PRK11930 PRK11930
putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine ...
16-338 1.02e-12

putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional


Pssm-ID: 237026 [Multi-domain]  Cd Length: 822  Bit Score: 70.76  E-value: 1.02e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  16 IGTLDRHVTDITTDSRT--AKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVKSKQ---EVEGDVTQIIVSETLRVASL 90
Cdd:PRK11930  17 LGDKDAIIDQILTDSRSlsFPENTLFFALKGERNDGHRYIQELYEKGVRNFVVSEEKhpeESYPDANFLKVKDPLKALQE 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  91 LA---HTLFDFPshqltTYGVTGTNGKtsiaTMI-HLIYRKLHK-----------NSAyLGT--NGFQINEQKT-----K 148
Cdd:PRK11930  97 LAayhRSQFDIP-----VIGITGSNGK----TIVkEWLYQLLSPdynivrsprsyNSQ-IGVplSVWQLNEEHElgifeA 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 149 GANTTPETVSLTKKIKEavdagaeamtmevsshglalgrlrgvefDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSqlge 228
Cdd:PRK11930 167 GISQPGEMEALQKIIKP----------------------------TIGILTNIGGAHQENFRSIKQKIMEKLKLFK---- 214
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 229 DLSKEKYvVLNNDDAFSEYLASVTPYEIFTYGI-DNDAQFKAIHINESLQGVTFELDTPFGNYNVQSPYVGKFNISNLMA 307
Cdd:PRK11930 215 DCDVIIY-NGDNELISSCITKSNLTLKLISWSRkDPEAPLYIPFVEKKEDHTVISYTYKGEDFHFEIPFIDDASIENLIH 293
                        330       340       350
                 ....*....|....*....|....*....|.
gi 488409023 308 AMIAVWSKGIPFETIVEAVKTLEPVEGRLEV 338
Cdd:PRK11930 294 CIAVLLYLGYSADQIQERMARLEPVAMRLEV 324
F430_CfbE NF033197
coenzyme F430 synthase; Members of this family are coenzyme F430 synthase, involving in ...
108-457 3.31e-06

coenzyme F430 synthase; Members of this family are coenzyme F430 synthase, involving in synthesizing coenzyme F430, which is used in methanogens by coenzyme M reductase. Members of this family are restricted to archaeal methanogens, and resemble (and may be misannotated as) MurD, an enzyme of bacterial cell wall biosynthesis.


Pssm-ID: 467992 [Multi-domain]  Cd Length: 419  Bit Score: 49.25  E-value: 3.31e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 108 VTGTNGKTSIATMIHLIYRK----LHKNS-AYLGTNGFQINeqktKGANTTPETVSLTKKIKEAVDAGAEAMTMEVSshg 182
Cdd:NF033197  97 ITGVKGKTTTAELLAHILSDeyvlLHTSRgTERYPEGELSN----KGSITPASILNALELAEEIGIDDYGFLIFEVS--- 169
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 183 laLGRLrgVEFDVAIFSNLTQDHLDFHGTMEAYgHAKSLLFSqlgedLSKEKYVVLNNDDAfseYLASVTPYEIFTYGID 262
Cdd:NF033197 170 --LGGT--GAGDVGIITNILEDYPIAGGKRSAS-AAKLQSLK-----NAKVGSINVADLGI---YINGKNKLVITVAGVE 236
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 263 ndaqfkaihineslqgvTFELDTPFGNYNVQ----SPYV-GKFNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEGRLE 337
Cdd:NF033197 237 -----------------ILSKYPLRFKYGNTefefNPLLfGPHYRENSLFAIEAALNLGVDPEDIISALKGFKGLPGRMA 299
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 338 V----------------------------LDPNLPIDLII--DYAHTADGMN--KLIDAVKPF-VKRKLIFLVGmagerd 384
Cdd:NF033197 300 VkkeggvvivdninpglnvkaieyalddaLELLGDGTLVIggDFGVVCEEIDidKLSEVLKKYrPKIDILVGVG------ 373
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488409023 385 ltktPEMGTvacradyviftpdnpanddpkmltsELAKGATHDNYVEFEDRAEGIRHAIEVAEPGDTVVLASK 457
Cdd:NF033197 374 ----TELGK-------------------------RLKKYLDKLEGYEAGTLEEGLDDARELTGEGNTLVIYRK 417
Mur_ligase pfam01225
Mur ligase family, catalytic domain; This family contains a number of related ligase enzymes ...
22-66 4.40e-05

Mur ligase family, catalytic domain; This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyze consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate.


Pssm-ID: 460121 [Multi-domain]  Cd Length: 84  Bit Score: 41.84  E-value: 4.40e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 488409023   22 HVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVV 66
Cdd:pfam01225   1 EIHFVGIDGRGMSPGALFLALKGYRVDGSDFIESLIALGAAAVVG 45
PRK14093 PRK14093
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; ...
15-335 9.84e-05

UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional


Pssm-ID: 184501 [Multi-domain]  Cd Length: 479  Bit Score: 44.77  E-value: 9.84e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  15 VIGTLDRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVKSKQ--EVEGDVTQIIVSETLRVASLLA 92
Cdd:PRK14093  20 RSGALPRDVTGISIDSRTLAPGDAYFAIKGDVHDGHAFVAAALKAGAALAVVERAQrdKFAADAPLLVVDDVLAALRDLG 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023  93 HTLFDFPSHQLTtyGVTGTNGKTSIATMIHLIyrklhknsayLGTNGfqinEQKTKGA---NTTPETVSLTKKIKEAVDA 169
Cdd:PRK14093 100 RAARARLEAKVI--AVTGSVGKTSTKEALRGV----------LGAQG----ETHASVAsfnNHWGVPLSLARCPADARFA 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 170 GAEaMTMEVSSHGLALGRLrgVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFsqlgEDLSKEKYVVLNNDDAFSEYLA 249
Cdd:PRK14093 164 VFE-IGMNHAGEIEPLVKM--VRPHVAIITTVEPVHLEFFSGIEAIADAKAEIF----TGLEPGGAAVLNRDNPQFDRLA 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488409023 250 SVTPY----EIFTYGIDNDAQFK----AIH-----INESLQG--VTFELDTPfgnynvqspyvGKFNISNLMAAMIAVWS 314
Cdd:PRK14093 237 ASARAagiaRIVSFGADEKADARlldvALHadcsaVHADILGhdVTYKLGMP-----------GRHIAMNSLAVLAAAEL 305
                        330       340
                 ....*....|....*....|.
gi 488409023 315 KGIPFETIVEAVKTLEPVEGR 335
Cdd:PRK14093 306 AGADLALAALALSQVQPAAGR 326
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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