NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|488390692|ref|WP_002460077|]
View 

MULTISPECIES: SE1832 family protein [Staphylococcus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SE1832_fam NF040877
SE1832 family small protein; This small protein is known to be expressed, but its function is ...
 2-52 5.15e-16

SE1832 family small protein; This small protein is known to be expressed, but its function is unknown.


:

Pssm-ID: 468813  Cd Length: 51  Bit Score: 63.66  E-value: 5.15e-16
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 488390692  2 DLEAKLAELKYDYVRLQNDLEKKESLNQNVDPLIGQLAEIEQQIATLRSKM 52
Cdd:NF040877  1 EIEQKIAELKSDYVRLQGDLEKLESTGGNVEKLEKQLEEIEEELKELRKQL 51
 
Name Accession Description Interval E-value
SE1832_fam NF040877
SE1832 family small protein; This small protein is known to be expressed, but its function is ...
 2-52 5.15e-16

SE1832 family small protein; This small protein is known to be expressed, but its function is unknown.


Pssm-ID: 468813  Cd Length: 51  Bit Score: 63.66  E-value: 5.15e-16
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 488390692  2 DLEAKLAELKYDYVRLQNDLEKKESLNQNVDPLIGQLAEIEQQIATLRSKM 52
Cdd:NF040877  1 EIEQKIAELKSDYVRLQGDLEKLESTGGNVEKLEKQLEEIEEELKELRKQL 51
PilO COG3167
Type IV pilus assembly protein PilO [Cell motility, Extracellular structures];
1-48 1.21e-03

Type IV pilus assembly protein PilO [Cell motility, Extracellular structures];


Pssm-ID: 442400 [Multi-domain]  Cd Length: 202  Bit Score: 34.15  E-value: 1.21e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 488390692   1 MDLEAKLAELKYDYVRLQNDLEKKESLNQNVDPLIGQLAEIEQQIATL 48
Cdd:COG3167   42 SPQLEELEELEAEEAQLKQELEKKQAKAANLPALKAQLEELEQQLGEL 89
 
Name Accession Description Interval E-value
SE1832_fam NF040877
SE1832 family small protein; This small protein is known to be expressed, but its function is ...
 2-52 5.15e-16

SE1832 family small protein; This small protein is known to be expressed, but its function is unknown.


Pssm-ID: 468813  Cd Length: 51  Bit Score: 63.66  E-value: 5.15e-16
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 488390692  2 DLEAKLAELKYDYVRLQNDLEKKESLNQNVDPLIGQLAEIEQQIATLRSKM 52
Cdd:NF040877  1 EIEQKIAELKSDYVRLQGDLEKLESTGGNVEKLEKQLEEIEEELKELRKQL 51
PilO COG3167
Type IV pilus assembly protein PilO [Cell motility, Extracellular structures];
1-48 1.21e-03

Type IV pilus assembly protein PilO [Cell motility, Extracellular structures];


Pssm-ID: 442400 [Multi-domain]  Cd Length: 202  Bit Score: 34.15  E-value: 1.21e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 488390692   1 MDLEAKLAELKYDYVRLQNDLEKKESLNQNVDPLIGQLAEIEQQIATL 48
Cdd:COG3167   42 SPQLEELEELEAEEAQLKQELEKKQAKAANLPALKAQLEELEQQLGEL 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH