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Conserved domains on  [gi|488390028|ref|WP_002459413|]
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MULTISPECIES: Nramp family divalent metal transporter [Staphylococcus]

Protein Classification

divalent metal cation transporter( domain architecture ID 10011492)

divalent metal cation transporter belonging to the NRAMP family, similar to the Escherichia coli MntH, which transports ions such as Mn2+ or Fe2+ across the cellular membrane

Gene Ontology:  GO:0046872|GO:0030001

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK00701 PRK00701
divalent metal cation transporter MntH;
6-449 0e+00

divalent metal cation transporter MntH;


:

Pssm-ID: 234815  Cd Length: 439  Bit Score: 622.25  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028   6 TTHQPKHLSLDEINNTIKFDSNGTSSQKFLAFLGPGLLVAVGYMDPGNWITSMQGGAQFGYTLLFIILISSLSAMLLQSM 85
Cdd:PRK00701   5 PRTATAPFSLSEVNGSVAVSSGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSL 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028  86 TLRLGIATSHDLAQMTKHYLSKPVAIIFWIIAELAIIATDIAEVIGSAIALNLLLGIPLIVGAIITVCDVFLLLFIMKFG 165
Cdd:PRK00701  85 SAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQRRG 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 166 FRKIEAIVGTLIFTVLAIFVFEVFISSPSTTAILEGFVPHKEIITNHGILYIALGIVGATIMPHNLYLHSSIVQSRqYDR 245
Cdd:PRK00701 165 FRPLEAIIGGLLLVIAAAFIVELFLAQPDWAAVLKGFIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTR-VVG 243
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 246 HSIKEKAQAIKYATIDSNLQLSVAFVVNCLLLVLGASLFYGVNQDQLGGFYDLYHALrtQPIlgaaLGAIMSTLFAVALL 325
Cdd:PRK00701 244 RTGEEKREALRFTRIDSAIALTIAGFVNAAMLILAAAAFHASGHTDVADIEDAYLLL--SPL----LGAAAATLFGIALL 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 326 ASGQNSTITGTLAGQIVMEGFLNISLPNWLRRLVTRAIAVIPVIICLIIfkGNEEKIEQLLVFSQVFLSIALPFSLIPLQ 405
Cdd:PRK00701 318 ASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVILL--GGELDPTRLLVLSQVVLSFGLPFALIPLL 395
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 488390028 406 LSTSNKQLMGPFVNKSWVNYCSWILIIVLSVLNVYLIIETFKEF 449
Cdd:PRK00701 396 LFTSDRKLMGELVNPRWVKIIAWIIAVLIVALNIYLLYQTFTGL 439
 
Name Accession Description Interval E-value
PRK00701 PRK00701
divalent metal cation transporter MntH;
6-449 0e+00

divalent metal cation transporter MntH;


Pssm-ID: 234815  Cd Length: 439  Bit Score: 622.25  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028   6 TTHQPKHLSLDEINNTIKFDSNGTSSQKFLAFLGPGLLVAVGYMDPGNWITSMQGGAQFGYTLLFIILISSLSAMLLQSM 85
Cdd:PRK00701   5 PRTATAPFSLSEVNGSVAVSSGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSL 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028  86 TLRLGIATSHDLAQMTKHYLSKPVAIIFWIIAELAIIATDIAEVIGSAIALNLLLGIPLIVGAIITVCDVFLLLFIMKFG 165
Cdd:PRK00701  85 SAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQRRG 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 166 FRKIEAIVGTLIFTVLAIFVFEVFISSPSTTAILEGFVPHKEIITNHGILYIALGIVGATIMPHNLYLHSSIVQSRqYDR 245
Cdd:PRK00701 165 FRPLEAIIGGLLLVIAAAFIVELFLAQPDWAAVLKGFIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTR-VVG 243
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 246 HSIKEKAQAIKYATIDSNLQLSVAFVVNCLLLVLGASLFYGVNQDQLGGFYDLYHALrtQPIlgaaLGAIMSTLFAVALL 325
Cdd:PRK00701 244 RTGEEKREALRFTRIDSAIALTIAGFVNAAMLILAAAAFHASGHTDVADIEDAYLLL--SPL----LGAAAATLFGIALL 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 326 ASGQNSTITGTLAGQIVMEGFLNISLPNWLRRLVTRAIAVIPVIICLIIfkGNEEKIEQLLVFSQVFLSIALPFSLIPLQ 405
Cdd:PRK00701 318 ASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVILL--GGELDPTRLLVLSQVVLSFGLPFALIPLL 395
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 488390028 406 LSTSNKQLMGPFVNKSWVNYCSWILIIVLSVLNVYLIIETFKEF 449
Cdd:PRK00701 396 LFTSDRKLMGELVNPRWVKIIAWIIAVLIVALNIYLLYQTFTGL 439
MntH COG1914
Mn2+ or Fe2+ transporter, NRAMP family [Inorganic ion transport and metabolism];
26-446 1.75e-121

Mn2+ or Fe2+ transporter, NRAMP family [Inorganic ion transport and metabolism];


Pssm-ID: 441518 [Multi-domain]  Cd Length: 405  Bit Score: 359.84  E-value: 1.75e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028  26 SNGTSSQKFLAFLGPGLLVAVGYMDPGNWITSMQGGAQFGYTLLFIILISSLSAMLLQSMTLRLGIATSHDLAQMTKHYL 105
Cdd:COG1914    2 RKRSRLRRLLALLGPGLLVAAAYIDPGNLATYTQAGAQFGYSLLWVILLSNLLAIVLQEMSARLGIVTGKGLAELIRERL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 106 SKPVAIIFWIIAELAIIATDIAEVIGSAIALNLLLGIPLIVGAIITVCDVFLLLFimKFGFRKIEAIVGTLIFTVLAIFV 185
Cdd:COG1914   82 GRWLGWLLLILLELANLATDAAEIAGAALALNLLFGIPLLLGAVITALLAILLLL--RGGYRRLERVLKVLVALMLLAFV 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 186 FEVFISSPSTTAILEG-FVPHkeiITNHGILYIALGIVGATIMPHNLYLHSSIVQSRQYDRhsikekAQAIKYATIDSNL 264
Cdd:COG1914  160 VTAFLAHPDWGEVAKGtLVPS---LPGSGSLLLAIAILGATVMPYNLFLHSSLVQEKGWTG------KEDLRYARLDTVV 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 265 QLSVAFVVNCLLLVLGASLFYGvNQDQLGGFYDLYHALRtqpilgAALGAIMSTLFAVALLASGQNSTITGTLAGQIVME 344
Cdd:COG1914  231 GMLLAGLVNLAILLLAAAVLHG-TGIGVDSAAQAAQALE------PLLGEWAAILFALGLLAAGFSSTITATLAGAYVMA 303
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 345 GFLNISLPNWLRR--LVTRAIAVIPVIICLIIFKgneeKIEQLLVFSQVFLSIALPFSLIPLQLSTSNKQLMGPFVNKSW 422
Cdd:COG1914  304 GFLGWRIGLWLRRfyLVTRLLTLIGALIVLLLGG----DPVKLLVLSQVLNGLLLPFALIPLLLLTNDKDLMGEYRNGRW 379
                        410       420
                 ....*....|....*....|....
gi 488390028 423 VNYCSWILIIVLSVLNVYLIIETF 446
Cdd:COG1914  380 LNVLGWLIVLLIVVLNLYLLVSTL 403
Nramp pfam01566
Natural resistance-associated macrophage protein; The natural resistance-associated macrophage ...
54-420 9.78e-118

Natural resistance-associated macrophage protein; The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains. This family of membrane proteins are divalent cation transporters. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. By controlling divalent cation concentrations Nramp1 may regulate the interphagosomal replication of bacteria. Mutations in Nramp1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis conversely this might however provide protection form rheumatoid arthritis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others it is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals. The yeast proteins Smf1 and Smf2 may also transport divalent cations.


Pssm-ID: 426327 [Multi-domain]  Cd Length: 356  Bit Score: 348.40  E-value: 9.78e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028   54 WITSMQGGAQFGYTLLFIILISSLSAMLLQSMTLRLGIATSHDLAQMTKHYLSKPVAIIFWIIAELAIIATDIAEVIGSA 133
Cdd:pfam01566   1 WATDIQAGARFGYSLLWVLLLSNLMAILLQELSARLGLVTGKGLAELIRERFPRKVSWLLWILAELAIIATDLAEVIGGA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028  134 IALNLLLGIPLIVGAIITVCDVFLLLFiMKFGFRKIEAIVGTLIFTVLAIFVFEVFISSPSTTAILEGFVphKEIITNHG 213
Cdd:pfam01566  81 IALNLLFGIPLWIGVLITAVLVLLLLF-QKGGYRKLEKVIIGLVLVIALSFIAELFLVKPDWGAVAAGLV--VPSFPGSG 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028  214 ILYIALGIVGATIMPHNLYLHSSIVQSRQYdRHSIKEKAQAIKYATIDSNLQLSVAFVVNCLLLVLGASLFYGVNQDQLG 293
Cdd:pfam01566 158 SLLLAVGILGATVMPHNLFLHSSLVQERGW-TIDRDEEDEALRYSRIDTIIALIVAGLVNAAILIVAAAAFHGSGGIDVA 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028  294 GFYDLYHALRtqPILGAALgaimSTLFAVALLASGQNSTITGTLAGQIVMEGFLNISLPNWLRRLVTRAIAVIPVIICLI 373
Cdd:pfam01566 237 TLADAAAALE--PLLGKAA----AVLFALGLLAAGLSSTITGTLAGQYVMEGFLGWRIPLWLRRLITRAIAFYPALAVIL 310
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 488390028  374 IFKGneEKIEQLLVFSQVFLSIALPFSLIPLQLSTSNKQLMGPFVNK 420
Cdd:pfam01566 311 LGGA--PGVVQLLVLSQVVLSLQLPFALIPLLLLTSDRKLMGEFVNS 355
nramp TIGR01197
NRAMP (natural resistance-associated macrophage protein) metal ion transporters; This model ...
33-414 1.02e-116

NRAMP (natural resistance-associated macrophage protein) metal ion transporters; This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene regulation and metal ion homeostasis. Nramp1 could confer resistance to infection in one of the two ways. (1) The uptake of Fe+2 can produce toxic hydroxyl radicals via Fenton reaction killing the pathogens in phagosomes or (2) Deplete the metal ion pools in the phagosome and deprive the pathogens of metal ions, which is critical for its survival. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 162246  Cd Length: 390  Bit Score: 347.10  E-value: 1.02e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028   33 KFLAFLGPGLLVAVGYMDPGNWITSMQGGAQFGYTLLFIILISSLSAMLLQSMTLRLGIATSHDLAQMTKHYLSKPVAII 112
Cdd:TIGR01197   2 KLWAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPRIT 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028  113 FWIIAELAIIATDIAEVIGSAIALNLLLGIPLIVGAIITVCDVFLLLFIMKFGFRKIEAIVGTLIFTVLAIFVFEVFISS 192
Cdd:TIGR01197  82 LWILAELAIIATDMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAYELFYAK 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028  193 PSTTAILEG-FVPHKEIItNHGILYIALGIVGATIMPHNLYLHSSIVQSRQYDRHSIKEKAQAIKYATIDSNLQLSV--- 268
Cdd:TIGR01197 162 PGQVKVLFGgFVPSCAVF-GTDGLLQAVGILGATVMPHSLYLHSALVQSRLVDRDVKEGVSEANMYRPIEAAIALSVsfs 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028  269 -----------AFVVNCLLLVLGASLFYGVNQDQLGGfyDLYHALRtqpILGAALGAIMSTLFAVALLASGQNSTITGTL 337
Cdd:TIGR01197 241 inefvialftaALFVNTNILVVAGATLFNSNNNADAA--DLFSIGV---LLGCLFSPAAGYIFAVGLLAAGQSSGMVGTY 315
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488390028  338 AGQIVMEGFLNISLPNWLRRLVTRAIAVIPViICLIIFKGNEEkIEQLLVFSQVFLSIALPFSLIPLQLSTSNKQLM 414
Cdd:TIGR01197 316 SGQFVMEGFLNWRWSPWLRRLITRAIAIIPC-LLVAAFGGREG-LTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390
Nramp_1 NF037982
Nramp family divalent metal transporter; Nramp (natural resistance-associated macrophage ...
39-413 1.09e-45

Nramp family divalent metal transporter; Nramp (natural resistance-associated macrophage protein) family divalent metal transporters are widely conserved divalent metal transporters, which enables manganese import in bacteria and dietary iron uptake in mammals.


Pssm-ID: 468301  Cd Length: 404  Bit Score: 163.30  E-value: 1.09e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028  39 GPGLLVAVGYMDPGNWITSMQGGAQFGYTLLFIILISSLSAMLLQSMTLRLGIATSHDLAQMTKHYLsKPVAIIFWIIAE 118
Cdd:NF037982   1 GPGVIAAAAGVGSGEFILWPYIGSQFGYTLLWAALVGVLMQMFLNMEIERYTLATGETLFTGFRRLW-KPWGWFFWVQAE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 119 LAIIATDIAEVIGSAIALNLLLGIPLIVGAIITVCDVFLLLFIMKFGFRKIEAIVGTLI--FTVLAIFVFEVFISSPSTT 196
Cdd:NF037982  80 LVNIWPGWATFSAAALTYLLGFGIPILWIAIATLVLIGLILTLAPVVYRALEKVIGVKVglLVVFVAVAVVAVIAAPDWG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 197 AILEGFV----PHKEIITNHGILYIALGIVGATIMPHNLYLHSS----------IVQ----------SRQY----DRHSI 248
Cdd:NF037982 160 ALGAGVLfpqlPDGDLFAVLLGAIAFAGAGGAQNMVQSNWLRDKgfgmgshvprLTSrvtgeteaepSTGYmfptDEENL 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 249 KEKAQAIKYATIDSNLQLSVA-FVVNCLLLVLGASLFYGVNQDQLG-GFYDLYHAlrtqpILGAALGAIMSTLFAVALLA 326
Cdd:NF037982 240 ARWRGWWRVANFDQLIAFWLIgFINISMLSVLAAATFFGSGSLANDvAFLDVEGQ-----TLAALVGPWFGTLFWLGGAA 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 327 SGQNSTI-----TGTLAGQIVMEGFLNIS-------LPNWLRRLVTraiaVIPVIIclIIFKGNEEKieQLLVFSQVFLS 394
Cdd:NF037982 315 SGLSSALgivdyVSRLAADVVKQGFLGGAsrwsesrIYLYLVWGLT----MFGIVI--LLAGGDQPL--VLLVISAVLLG 386
                        410
                 ....*....|....*....
gi 488390028 395 IALpFSLIPLQLSTSNKQL 413
Cdd:NF037982 387 FGM-FAYSILLLLLNRRRL 404
 
Name Accession Description Interval E-value
PRK00701 PRK00701
divalent metal cation transporter MntH;
6-449 0e+00

divalent metal cation transporter MntH;


Pssm-ID: 234815  Cd Length: 439  Bit Score: 622.25  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028   6 TTHQPKHLSLDEINNTIKFDSNGTSSQKFLAFLGPGLLVAVGYMDPGNWITSMQGGAQFGYTLLFIILISSLSAMLLQSM 85
Cdd:PRK00701   5 PRTATAPFSLSEVNGSVAVSSGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSL 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028  86 TLRLGIATSHDLAQMTKHYLSKPVAIIFWIIAELAIIATDIAEVIGSAIALNLLLGIPLIVGAIITVCDVFLLLFIMKFG 165
Cdd:PRK00701  85 SAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQRRG 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 166 FRKIEAIVGTLIFTVLAIFVFEVFISSPSTTAILEGFVPHKEIITNHGILYIALGIVGATIMPHNLYLHSSIVQSRqYDR 245
Cdd:PRK00701 165 FRPLEAIIGGLLLVIAAAFIVELFLAQPDWAAVLKGFIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTR-VVG 243
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 246 HSIKEKAQAIKYATIDSNLQLSVAFVVNCLLLVLGASLFYGVNQDQLGGFYDLYHALrtQPIlgaaLGAIMSTLFAVALL 325
Cdd:PRK00701 244 RTGEEKREALRFTRIDSAIALTIAGFVNAAMLILAAAAFHASGHTDVADIEDAYLLL--SPL----LGAAAATLFGIALL 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 326 ASGQNSTITGTLAGQIVMEGFLNISLPNWLRRLVTRAIAVIPVIICLIIfkGNEEKIEQLLVFSQVFLSIALPFSLIPLQ 405
Cdd:PRK00701 318 ASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVILL--GGELDPTRLLVLSQVVLSFGLPFALIPLL 395
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 488390028 406 LSTSNKQLMGPFVNKSWVNYCSWILIIVLSVLNVYLIIETFKEF 449
Cdd:PRK00701 396 LFTSDRKLMGELVNPRWVKIIAWIIAVLIVALNIYLLYQTFTGL 439
MntH COG1914
Mn2+ or Fe2+ transporter, NRAMP family [Inorganic ion transport and metabolism];
26-446 1.75e-121

Mn2+ or Fe2+ transporter, NRAMP family [Inorganic ion transport and metabolism];


Pssm-ID: 441518 [Multi-domain]  Cd Length: 405  Bit Score: 359.84  E-value: 1.75e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028  26 SNGTSSQKFLAFLGPGLLVAVGYMDPGNWITSMQGGAQFGYTLLFIILISSLSAMLLQSMTLRLGIATSHDLAQMTKHYL 105
Cdd:COG1914    2 RKRSRLRRLLALLGPGLLVAAAYIDPGNLATYTQAGAQFGYSLLWVILLSNLLAIVLQEMSARLGIVTGKGLAELIRERL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 106 SKPVAIIFWIIAELAIIATDIAEVIGSAIALNLLLGIPLIVGAIITVCDVFLLLFimKFGFRKIEAIVGTLIFTVLAIFV 185
Cdd:COG1914   82 GRWLGWLLLILLELANLATDAAEIAGAALALNLLFGIPLLLGAVITALLAILLLL--RGGYRRLERVLKVLVALMLLAFV 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 186 FEVFISSPSTTAILEG-FVPHkeiITNHGILYIALGIVGATIMPHNLYLHSSIVQSRQYDRhsikekAQAIKYATIDSNL 264
Cdd:COG1914  160 VTAFLAHPDWGEVAKGtLVPS---LPGSGSLLLAIAILGATVMPYNLFLHSSLVQEKGWTG------KEDLRYARLDTVV 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 265 QLSVAFVVNCLLLVLGASLFYGvNQDQLGGFYDLYHALRtqpilgAALGAIMSTLFAVALLASGQNSTITGTLAGQIVME 344
Cdd:COG1914  231 GMLLAGLVNLAILLLAAAVLHG-TGIGVDSAAQAAQALE------PLLGEWAAILFALGLLAAGFSSTITATLAGAYVMA 303
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 345 GFLNISLPNWLRR--LVTRAIAVIPVIICLIIFKgneeKIEQLLVFSQVFLSIALPFSLIPLQLSTSNKQLMGPFVNKSW 422
Cdd:COG1914  304 GFLGWRIGLWLRRfyLVTRLLTLIGALIVLLLGG----DPVKLLVLSQVLNGLLLPFALIPLLLLTNDKDLMGEYRNGRW 379
                        410       420
                 ....*....|....*....|....
gi 488390028 423 VNYCSWILIIVLSVLNVYLIIETF 446
Cdd:COG1914  380 LNVLGWLIVLLIVVLNLYLLVSTL 403
Nramp pfam01566
Natural resistance-associated macrophage protein; The natural resistance-associated macrophage ...
54-420 9.78e-118

Natural resistance-associated macrophage protein; The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains. This family of membrane proteins are divalent cation transporters. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. By controlling divalent cation concentrations Nramp1 may regulate the interphagosomal replication of bacteria. Mutations in Nramp1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis conversely this might however provide protection form rheumatoid arthritis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others it is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals. The yeast proteins Smf1 and Smf2 may also transport divalent cations.


Pssm-ID: 426327 [Multi-domain]  Cd Length: 356  Bit Score: 348.40  E-value: 9.78e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028   54 WITSMQGGAQFGYTLLFIILISSLSAMLLQSMTLRLGIATSHDLAQMTKHYLSKPVAIIFWIIAELAIIATDIAEVIGSA 133
Cdd:pfam01566   1 WATDIQAGARFGYSLLWVLLLSNLMAILLQELSARLGLVTGKGLAELIRERFPRKVSWLLWILAELAIIATDLAEVIGGA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028  134 IALNLLLGIPLIVGAIITVCDVFLLLFiMKFGFRKIEAIVGTLIFTVLAIFVFEVFISSPSTTAILEGFVphKEIITNHG 213
Cdd:pfam01566  81 IALNLLFGIPLWIGVLITAVLVLLLLF-QKGGYRKLEKVIIGLVLVIALSFIAELFLVKPDWGAVAAGLV--VPSFPGSG 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028  214 ILYIALGIVGATIMPHNLYLHSSIVQSRQYdRHSIKEKAQAIKYATIDSNLQLSVAFVVNCLLLVLGASLFYGVNQDQLG 293
Cdd:pfam01566 158 SLLLAVGILGATVMPHNLFLHSSLVQERGW-TIDRDEEDEALRYSRIDTIIALIVAGLVNAAILIVAAAAFHGSGGIDVA 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028  294 GFYDLYHALRtqPILGAALgaimSTLFAVALLASGQNSTITGTLAGQIVMEGFLNISLPNWLRRLVTRAIAVIPVIICLI 373
Cdd:pfam01566 237 TLADAAAALE--PLLGKAA----AVLFALGLLAAGLSSTITGTLAGQYVMEGFLGWRIPLWLRRLITRAIAFYPALAVIL 310
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 488390028  374 IFKGneEKIEQLLVFSQVFLSIALPFSLIPLQLSTSNKQLMGPFVNK 420
Cdd:pfam01566 311 LGGA--PGVVQLLVLSQVVLSLQLPFALIPLLLLTSDRKLMGEFVNS 355
nramp TIGR01197
NRAMP (natural resistance-associated macrophage protein) metal ion transporters; This model ...
33-414 1.02e-116

NRAMP (natural resistance-associated macrophage protein) metal ion transporters; This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene regulation and metal ion homeostasis. Nramp1 could confer resistance to infection in one of the two ways. (1) The uptake of Fe+2 can produce toxic hydroxyl radicals via Fenton reaction killing the pathogens in phagosomes or (2) Deplete the metal ion pools in the phagosome and deprive the pathogens of metal ions, which is critical for its survival. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 162246  Cd Length: 390  Bit Score: 347.10  E-value: 1.02e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028   33 KFLAFLGPGLLVAVGYMDPGNWITSMQGGAQFGYTLLFIILISSLSAMLLQSMTLRLGIATSHDLAQMTKHYLSKPVAII 112
Cdd:TIGR01197   2 KLWAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPRIT 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028  113 FWIIAELAIIATDIAEVIGSAIALNLLLGIPLIVGAIITVCDVFLLLFIMKFGFRKIEAIVGTLIFTVLAIFVFEVFISS 192
Cdd:TIGR01197  82 LWILAELAIIATDMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAYELFYAK 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028  193 PSTTAILEG-FVPHKEIItNHGILYIALGIVGATIMPHNLYLHSSIVQSRQYDRHSIKEKAQAIKYATIDSNLQLSV--- 268
Cdd:TIGR01197 162 PGQVKVLFGgFVPSCAVF-GTDGLLQAVGILGATVMPHSLYLHSALVQSRLVDRDVKEGVSEANMYRPIEAAIALSVsfs 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028  269 -----------AFVVNCLLLVLGASLFYGVNQDQLGGfyDLYHALRtqpILGAALGAIMSTLFAVALLASGQNSTITGTL 337
Cdd:TIGR01197 241 inefvialftaALFVNTNILVVAGATLFNSNNNADAA--DLFSIGV---LLGCLFSPAAGYIFAVGLLAAGQSSGMVGTY 315
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488390028  338 AGQIVMEGFLNISLPNWLRRLVTRAIAVIPViICLIIFKGNEEkIEQLLVFSQVFLSIALPFSLIPLQLSTSNKQLM 414
Cdd:TIGR01197 316 SGQFVMEGFLNWRWSPWLRRLITRAIAIIPC-LLVAAFGGREG-LTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390
Nramp_1 NF037982
Nramp family divalent metal transporter; Nramp (natural resistance-associated macrophage ...
39-413 1.09e-45

Nramp family divalent metal transporter; Nramp (natural resistance-associated macrophage protein) family divalent metal transporters are widely conserved divalent metal transporters, which enables manganese import in bacteria and dietary iron uptake in mammals.


Pssm-ID: 468301  Cd Length: 404  Bit Score: 163.30  E-value: 1.09e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028  39 GPGLLVAVGYMDPGNWITSMQGGAQFGYTLLFIILISSLSAMLLQSMTLRLGIATSHDLAQMTKHYLsKPVAIIFWIIAE 118
Cdd:NF037982   1 GPGVIAAAAGVGSGEFILWPYIGSQFGYTLLWAALVGVLMQMFLNMEIERYTLATGETLFTGFRRLW-KPWGWFFWVQAE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 119 LAIIATDIAEVIGSAIALNLLLGIPLIVGAIITVCDVFLLLFIMKFGFRKIEAIVGTLI--FTVLAIFVFEVFISSPSTT 196
Cdd:NF037982  80 LVNIWPGWATFSAAALTYLLGFGIPILWIAIATLVLIGLILTLAPVVYRALEKVIGVKVglLVVFVAVAVVAVIAAPDWG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 197 AILEGFV----PHKEIITNHGILYIALGIVGATIMPHNLYLHSS----------IVQ----------SRQY----DRHSI 248
Cdd:NF037982 160 ALGAGVLfpqlPDGDLFAVLLGAIAFAGAGGAQNMVQSNWLRDKgfgmgshvprLTSrvtgeteaepSTGYmfptDEENL 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 249 KEKAQAIKYATIDSNLQLSVA-FVVNCLLLVLGASLFYGVNQDQLG-GFYDLYHAlrtqpILGAALGAIMSTLFAVALLA 326
Cdd:NF037982 240 ARWRGWWRVANFDQLIAFWLIgFINISMLSVLAAATFFGSGSLANDvAFLDVEGQ-----TLAALVGPWFGTLFWLGGAA 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488390028 327 SGQNSTI-----TGTLAGQIVMEGFLNIS-------LPNWLRRLVTraiaVIPVIIclIIFKGNEEKieQLLVFSQVFLS 394
Cdd:NF037982 315 SGLSSALgivdyVSRLAADVVKQGFLGGAsrwsesrIYLYLVWGLT----MFGIVI--LLAGGDQPL--VLLVISAVLLG 386
                        410
                 ....*....|....*....
gi 488390028 395 IALpFSLIPLQLSTSNKQL 413
Cdd:NF037982 387 FGM-FAYSILLLLLNRRRL 404
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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