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Conserved domains on  [gi|488363182|ref|WP_002432567|]
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MULTISPECIES: DUF3139 domain-containing protein [Staphylococcus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3139 super family cl12876
Protein of unknown function (DUF3139); This family of proteins with unknown function appears ...
 29-82 3.35e-06

Protein of unknown function (DUF3139); This family of proteins with unknown function appears to be restricted to Firmicutes.


The actual alignment was detected with superfamily member pfam11337:

Pssm-ID: 431823  Cd Length: 77  Bit Score: 41.95  E-value: 3.35e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 488363182   29 KSYQGHKNIELMDSYI-KEHHLQDKIKKQDNLYSAKKGMYYKEIVFKDESNVTYV 82
Cdd:pfam11337  22 KPIQKYLGNKKLDKYLtEQGYKEDDIKSIKPKYDIKKGGYYYKVVFKDEPNLEYV 76
 
Name Accession Description Interval E-value
DUF3139 pfam11337
Protein of unknown function (DUF3139); This family of proteins with unknown function appears ...
 29-82 3.35e-06

Protein of unknown function (DUF3139); This family of proteins with unknown function appears to be restricted to Firmicutes.


Pssm-ID: 431823  Cd Length: 77  Bit Score: 41.95  E-value: 3.35e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 488363182   29 KSYQGHKNIELMDSYI-KEHHLQDKIKKQDNLYSAKKGMYYKEIVFKDESNVTYV 82
Cdd:pfam11337  22 KPIQKYLGNKKLDKYLtEQGYKEDDIKSIKPKYDIKKGGYYYKVVFKDEPNLEYV 76
 
Name Accession Description Interval E-value
DUF3139 pfam11337
Protein of unknown function (DUF3139); This family of proteins with unknown function appears ...
 29-82 3.35e-06

Protein of unknown function (DUF3139); This family of proteins with unknown function appears to be restricted to Firmicutes.


Pssm-ID: 431823  Cd Length: 77  Bit Score: 41.95  E-value: 3.35e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 488363182   29 KSYQGHKNIELMDSYI-KEHHLQDKIKKQDNLYSAKKGMYYKEIVFKDESNVTYV 82
Cdd:pfam11337  22 KPIQKYLGNKKLDKYLtEQGYKEDDIKSIKPKYDIKKGGYYYKVVFKDEPNLEYV 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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