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Conserved domains on  [gi|488287312|ref|WP_002358520|]
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Rib/alpha-like domain-containing protein, partial [Enterococcus faecalis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Big_6 pfam17936
Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial ...
 72-151 8.26e-17

Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.


:

Pssm-ID: 465576 [Multi-domain]  Cd Length: 83  Bit Score: 72.27  E-value: 8.26e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488287312   72 APNKPQVDPITDGDKIVTGKTEPNADVTVTLPDGSQY-HGTADKSGYFKVNV-PKLEAGTKVKVTSTDESGNTSEPTDVV 149
Cdd:pfam17936   1 APAAPTNLAVSDDGTTLTGTGEAGATVTVKDADGNVLgTGTVDADGTFSVTLdPAQANGETLSVTATDAAGNVSPAATIT 80


                  ..
gi 488287312  150 VS 151
Cdd:pfam17936  81 AP 82
Rib pfam08428
Rib domain; The region featured in this family is found repeated in a number of bacterial ...
 1-58 3.78e-14

Rib domain; The region featured in this family is found repeated in a number of bacterial surface proteins, such as Rib and alpha. These are expressed by group B streptococci, and Rib is thought to confer protective immunity.


:

Pssm-ID: 462474 [Multi-domain]  Cd Length: 76  Bit Score: 64.94  E-value: 3.78e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 488287312    1 KGQKVTTELNKEPEASDGIKNKSDLPKGTMYFWKEKVDVGIPGNKKATVVVIYPDGSK 58
Cdd:pfam08428   8 KGKDITVEVGETPDAEDGIKNKDDLPEGTKYTWKTPPDTTTPGDKTGTVVVTYPDGST 65
 
Name Accession Description Interval E-value
Big_6 pfam17936
Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial ...
 72-151 8.26e-17

Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.


Pssm-ID: 465576 [Multi-domain]  Cd Length: 83  Bit Score: 72.27  E-value: 8.26e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488287312   72 APNKPQVDPITDGDKIVTGKTEPNADVTVTLPDGSQY-HGTADKSGYFKVNV-PKLEAGTKVKVTSTDESGNTSEPTDVV 149
Cdd:pfam17936   1 APAAPTNLAVSDDGTTLTGTGEAGATVTVKDADGNVLgTGTVDADGTFSVTLdPAQANGETLSVTATDAAGNVSPAATIT 80


                  ..
gi 488287312  150 VS 151
Cdd:pfam17936  81 AP 82
Rib pfam08428
Rib domain; The region featured in this family is found repeated in a number of bacterial ...
 1-58 3.78e-14

Rib domain; The region featured in this family is found repeated in a number of bacterial surface proteins, such as Rib and alpha. These are expressed by group B streptococci, and Rib is thought to confer protective immunity.


Pssm-ID: 462474 [Multi-domain]  Cd Length: 76  Bit Score: 64.94  E-value: 3.78e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 488287312    1 KGQKVTTELNKEPEASDGIKNKSDLPKGTMYFWKEKVDVGIPGNKKATVVVIYPDGSK 58
Cdd:pfam08428   8 KGKDITVEVGETPDAEDGIKNKDDLPEGTKYTWKTPPDTTTPGDKTGTVVVTYPDGST 65
rib_alpha TIGR02331
Rib/alpha/Esp surface antigen repeat; Sequences in this family are tandem repeats of about 79 ...
 5-58 4.74e-10

Rib/alpha/Esp surface antigen repeat; Sequences in this family are tandem repeats of about 79 amino acids, present in up to 14 copies in a protein and highly identical, even at the DNA level, within each protein. Sequences with these repeats are found in the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis, and related proteins of Lactobacillus. The repeat lacks Cys residues. Most members of this protein family also have the cell wall anchor motif LPXTG shared by many staphyloccal and streptococcal surface antigens.


Pssm-ID: 131384 [Multi-domain]  Cd Length: 80  Bit Score: 54.11  E-value: 4.74e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 488287312    5 VTTELNKEPEASDGIKNKSDLPKGTMYFWK--EKVDVGIPGNKKATVVVIYPDGSK 58
Cdd:TIGR02331   2 ETVEVGGTPDASDSITNLVDLPDGTTYVWKtvNTPDTNTPGDKPAVVVVTYPDGTK 57
Ig_like_BLP2 NF040520
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus ...
 44-149 9.21e-09

Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus Acinetobacter, resembles the much larger biofilm-associated proteins Bap and Blp1 in N-terminal sequence and the presence of tandem Ig-like repeats.


Pssm-ID: 468522 [Multi-domain]  Cd Length: 729  Bit Score: 54.66  E-value: 9.21e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488287312  44 NKKATVVVIYPDGSKEEVEVVISVVDKKAPNKPQVDPITDGDkIVTGKTEPNADVTVTLPDGSQ-YHGTADKSGYFKVNV 122
Cdd:NF040520 395 SQKGTIIVEDAAGNQSKPLEITAGKDTIAPDKPTAQINAAGT-SVTGTAEANAKIEIKDSAGKViGTGTADADGKFTITI 473

                         90       100
                 ....*....|....*....|....*...
gi 488287312 123 -PKLEAGTKVKVTSTDESGNTSEPTDVV 149
Cdd:NF040520 474 sPALTDKNIGKVYAIDAAGNRSDATDVT 501
Ig_like_BLP2 NF040520
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus ...
 36-150 1.13e-07

Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus Acinetobacter, resembles the much larger biofilm-associated proteins Bap and Blp1 in N-terminal sequence and the presence of tandem Ig-like repeats.


Pssm-ID: 468522 [Multi-domain]  Cd Length: 729  Bit Score: 51.58  E-value: 1.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488287312  36 KVDVGIPGNKKATVVVIYPDGSKEEVEVVISVVDKKAPNKPQVDPITDGDkIVTGKTEPNADVTVTLPDGsQYHGT--AD 113
Cdd:NF040520 217 KLDQPLVNGNKVNVTAIDAAGNASKATVVTGTKDTIAPDAPQAQLNADGT-IVTGKTEANAKVSVYDADG-KLLGTvtAN 294

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 488287312 114 KSGYFKVNV-PKLEAGTKVKVTSTDESGNTSEPTDVVV 150
Cdd:NF040520 295 KEGLYSIKVsPPLTSDKGGTVIAEDAAGNKSEPSKIIA 332
Ig_like_BLP2 NF040520
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus ...
 45-145 6.65e-05

Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus Acinetobacter, resembles the much larger biofilm-associated proteins Bap and Blp1 in N-terminal sequence and the presence of tandem Ig-like repeats.


Pssm-ID: 468522 [Multi-domain]  Cd Length: 729  Bit Score: 43.10  E-value: 6.65e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488287312  45 KKATVVVIYPDGSKEEVEVVISVVDKKAPNKPQVDPITDGDKIVtGKTEPNADVTVTLPDGSQY-HGTADKSGYFKVNV- 122
Cdd:NF040520 311 KGGTVIAEDAAGNKSEPSKIIAGKDTIAPDQPLVEVNKEGTSIE-GRAEANAKVQIKDADGKVIgTGTADAQGKFQITLs 389

                         90       100
                 ....*....|....*....|...
gi 488287312 123 PKLEAGTKVKVTSTDESGNTSEP 145
Cdd:NF040520 390 PALKTSQKGTIIVEDAAGNQSKP 412
Ig_like_BLP2 NF040520
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus ...
 69-149 7.49e-05

Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus Acinetobacter, resembles the much larger biofilm-associated proteins Bap and Blp1 in N-terminal sequence and the presence of tandem Ig-like repeats.


Pssm-ID: 468522 [Multi-domain]  Cd Length: 729  Bit Score: 43.10  E-value: 7.49e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488287312  69 DKKAPNKPQVDPITDGDKIvTGKTEPNADVTVTLPDGSQY-HGTADKSGYFKVNVPK-LEAGTKVKVTSTDESGNTSEPT 146
Cdd:NF040520 165 DITPPATPTATLADDTQTI-TGKAEANAKIYIKDATGKVIaTGQADASGNYTIKLDQpLVNGNKVNVTAIDAAGNASKAT 243


                 ...
gi 488287312 147 DVV 149
Cdd:NF040520 244 VVT 246
 
Name Accession Description Interval E-value
Big_6 pfam17936
Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial ...
 72-151 8.26e-17

Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.


Pssm-ID: 465576 [Multi-domain]  Cd Length: 83  Bit Score: 72.27  E-value: 8.26e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488287312   72 APNKPQVDPITDGDKIVTGKTEPNADVTVTLPDGSQY-HGTADKSGYFKVNV-PKLEAGTKVKVTSTDESGNTSEPTDVV 149
Cdd:pfam17936   1 APAAPTNLAVSDDGTTLTGTGEAGATVTVKDADGNVLgTGTVDADGTFSVTLdPAQANGETLSVTATDAAGNVSPAATIT 80


                  ..
gi 488287312  150 VS 151
Cdd:pfam17936  81 AP 82
Rib pfam08428
Rib domain; The region featured in this family is found repeated in a number of bacterial ...
 1-58 3.78e-14

Rib domain; The region featured in this family is found repeated in a number of bacterial surface proteins, such as Rib and alpha. These are expressed by group B streptococci, and Rib is thought to confer protective immunity.


Pssm-ID: 462474 [Multi-domain]  Cd Length: 76  Bit Score: 64.94  E-value: 3.78e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 488287312    1 KGQKVTTELNKEPEASDGIKNKSDLPKGTMYFWKEKVDVGIPGNKKATVVVIYPDGSK 58
Cdd:pfam08428   8 KGKDITVEVGETPDAEDGIKNKDDLPEGTKYTWKTPPDTTTPGDKTGTVVVTYPDGST 65
rib_alpha TIGR02331
Rib/alpha/Esp surface antigen repeat; Sequences in this family are tandem repeats of about 79 ...
 5-58 4.74e-10

Rib/alpha/Esp surface antigen repeat; Sequences in this family are tandem repeats of about 79 amino acids, present in up to 14 copies in a protein and highly identical, even at the DNA level, within each protein. Sequences with these repeats are found in the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis, and related proteins of Lactobacillus. The repeat lacks Cys residues. Most members of this protein family also have the cell wall anchor motif LPXTG shared by many staphyloccal and streptococcal surface antigens.


Pssm-ID: 131384 [Multi-domain]  Cd Length: 80  Bit Score: 54.11  E-value: 4.74e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 488287312    5 VTTELNKEPEASDGIKNKSDLPKGTMYFWK--EKVDVGIPGNKKATVVVIYPDGSK 58
Cdd:TIGR02331   2 ETVEVGGTPDASDSITNLVDLPDGTTYVWKtvNTPDTNTPGDKPAVVVVTYPDGTK 57
Ig_like_BLP2 NF040520
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus ...
 44-149 9.21e-09

Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus Acinetobacter, resembles the much larger biofilm-associated proteins Bap and Blp1 in N-terminal sequence and the presence of tandem Ig-like repeats.


Pssm-ID: 468522 [Multi-domain]  Cd Length: 729  Bit Score: 54.66  E-value: 9.21e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488287312  44 NKKATVVVIYPDGSKEEVEVVISVVDKKAPNKPQVDPITDGDkIVTGKTEPNADVTVTLPDGSQ-YHGTADKSGYFKVNV 122
Cdd:NF040520 395 SQKGTIIVEDAAGNQSKPLEITAGKDTIAPDKPTAQINAAGT-SVTGTAEANAKIEIKDSAGKViGTGTADADGKFTITI 473

                         90       100
                 ....*....|....*....|....*...
gi 488287312 123 -PKLEAGTKVKVTSTDESGNTSEPTDVV 149
Cdd:NF040520 474 sPALTDKNIGKVYAIDAAGNRSDATDVT 501
Ig_like_BLP2 NF040520
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus ...
 36-150 1.13e-07

Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus Acinetobacter, resembles the much larger biofilm-associated proteins Bap and Blp1 in N-terminal sequence and the presence of tandem Ig-like repeats.


Pssm-ID: 468522 [Multi-domain]  Cd Length: 729  Bit Score: 51.58  E-value: 1.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488287312  36 KVDVGIPGNKKATVVVIYPDGSKEEVEVVISVVDKKAPNKPQVDPITDGDkIVTGKTEPNADVTVTLPDGsQYHGT--AD 113
Cdd:NF040520 217 KLDQPLVNGNKVNVTAIDAAGNASKATVVTGTKDTIAPDAPQAQLNADGT-IVTGKTEANAKVSVYDADG-KLLGTvtAN 294

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 488287312 114 KSGYFKVNV-PKLEAGTKVKVTSTDESGNTSEPTDVVV 150
Cdd:NF040520 295 KEGLYSIKVsPPLTSDKGGTVIAEDAAGNKSEPSKIIA 332
Ig_like_BLP2 NF040520
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus ...
 45-145 6.65e-05

Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus Acinetobacter, resembles the much larger biofilm-associated proteins Bap and Blp1 in N-terminal sequence and the presence of tandem Ig-like repeats.


Pssm-ID: 468522 [Multi-domain]  Cd Length: 729  Bit Score: 43.10  E-value: 6.65e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488287312  45 KKATVVVIYPDGSKEEVEVVISVVDKKAPNKPQVDPITDGDKIVtGKTEPNADVTVTLPDGSQY-HGTADKSGYFKVNV- 122
Cdd:NF040520 311 KGGTVIAEDAAGNKSEPSKIIAGKDTIAPDQPLVEVNKEGTSIE-GRAEANAKVQIKDADGKVIgTGTADAQGKFQITLs 389

                         90       100
                 ....*....|....*....|...
gi 488287312 123 PKLEAGTKVKVTSTDESGNTSEP 145
Cdd:NF040520 390 PALKTSQKGTIIVEDAAGNQSKP 412
Ig_like_BLP2 NF040520
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus ...
 69-149 7.49e-05

Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus Acinetobacter, resembles the much larger biofilm-associated proteins Bap and Blp1 in N-terminal sequence and the presence of tandem Ig-like repeats.


Pssm-ID: 468522 [Multi-domain]  Cd Length: 729  Bit Score: 43.10  E-value: 7.49e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488287312  69 DKKAPNKPQVDPITDGDKIvTGKTEPNADVTVTLPDGSQY-HGTADKSGYFKVNVPK-LEAGTKVKVTSTDESGNTSEPT 146
Cdd:NF040520 165 DITPPATPTATLADDTQTI-TGKAEANAKIYIKDATGKVIaTGQADASGNYTIKLDQpLVNGNKVNVTAIDAAGNASKAT 243


                 ...
gi 488287312 147 DVV 149
Cdd:NF040520 244 VVT 246
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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