NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|488164595|ref|WP_002235803|]
View 

type IV conjugative transfer system protein TraL [Neisseria meningitidis]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TraL super family cl06278
TraL protein; This family consists of several bacterial TraL proteins. TraL is a predicted ...
 6-92 4.21e-18

TraL protein; This family consists of several bacterial TraL proteins. TraL is a predicted peripheral membrane protein which is thought to be involved in bacterial sex pilus assembly. The exact function of this family is unclear.


The actual alignment was detected with superfamily member pfam07178:

Pssm-ID: 446955  Cd Length: 90  Bit Score: 71.93  E-value: 4.21e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488164595   6 VPVSIDDPKKAFIWDLDVFILFMSGFGIGIVSRHFFISMSISLFIAWRWGKLKSGKHQWFFLHVLYWYLPINE-KNKRIP 84
Cdd:pfam07178  3 IPQYLDDPERILFWTLDELMPALVGFVWGILLQQFVIGLVLGLLAAWLYRKLKKGRGPGFLLHLAYWYLPTSFlGLKATP 82


                 ....*...
gi 488164595  85 ETNKREFL 92
Cdd:pfam07178 83 PSHIRELV 90
 
Name Accession Description Interval E-value
TraL pfam07178
TraL protein; This family consists of several bacterial TraL proteins. TraL is a predicted ...
 6-92 4.21e-18

TraL protein; This family consists of several bacterial TraL proteins. TraL is a predicted peripheral membrane protein which is thought to be involved in bacterial sex pilus assembly. The exact function of this family is unclear.


Pssm-ID: 429337  Cd Length: 90  Bit Score: 71.93  E-value: 4.21e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488164595   6 VPVSIDDPKKAFIWDLDVFILFMSGFGIGIVSRHFFISMSISLFIAWRWGKLKSGKHQWFFLHVLYWYLPINE-KNKRIP 84
Cdd:pfam07178  3 IPQYLDDPERILFWTLDELMPALVGFVWGILLQQFVIGLVLGLLAAWLYRKLKKGRGPGFLLHLAYWYLPTSFlGLKATP 82


                 ....*...
gi 488164595  85 ETNKREFL 92
Cdd:pfam07178 83 PSHIRELV 90
TraL_TIGR TIGR02762
type IV conjugative transfer system protein TraL; This protein is part of the type IV ...
 4-75 5.80e-11

type IV conjugative transfer system protein TraL; This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown. [Cellular processes, Conjugation]


Pssm-ID: 274286  Cd Length: 94  Bit Score: 53.53  E-value: 5.80e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488164595   4 FHVPVSIDDPKKAFIWDLDVFILFMSGFGIGIVSRHFFISMSIS--LFIAWRWGKLKSGKHQWFFLHVLYWYLP 75
Cdd:TIGR02762  3 YKIPKYLDEQPRILGWPLDEFLPGATLFGVGILSGKALIGLILGaaVMLIWKLRRLKGGEGPNFLLHLFYWYLP 76
 
Name Accession Description Interval E-value
TraL pfam07178
TraL protein; This family consists of several bacterial TraL proteins. TraL is a predicted ...
 6-92 4.21e-18

TraL protein; This family consists of several bacterial TraL proteins. TraL is a predicted peripheral membrane protein which is thought to be involved in bacterial sex pilus assembly. The exact function of this family is unclear.


Pssm-ID: 429337  Cd Length: 90  Bit Score: 71.93  E-value: 4.21e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488164595   6 VPVSIDDPKKAFIWDLDVFILFMSGFGIGIVSRHFFISMSISLFIAWRWGKLKSGKHQWFFLHVLYWYLPINE-KNKRIP 84
Cdd:pfam07178  3 IPQYLDDPERILFWTLDELMPALVGFVWGILLQQFVIGLVLGLLAAWLYRKLKKGRGPGFLLHLAYWYLPTSFlGLKATP 82


                 ....*...
gi 488164595  85 ETNKREFL 92
Cdd:pfam07178 83 PSHIRELV 90
TraL_TIGR TIGR02762
type IV conjugative transfer system protein TraL; This protein is part of the type IV ...
 4-75 5.80e-11

type IV conjugative transfer system protein TraL; This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown. [Cellular processes, Conjugation]


Pssm-ID: 274286  Cd Length: 94  Bit Score: 53.53  E-value: 5.80e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488164595   4 FHVPVSIDDPKKAFIWDLDVFILFMSGFGIGIVSRHFFISMSIS--LFIAWRWGKLKSGKHQWFFLHVLYWYLP 75
Cdd:TIGR02762  3 YKIPKYLDEQPRILGWPLDEFLPGATLFGVGILSGKALIGLILGaaVMLIWKLRRLKGGEGPNFLLHLFYWYLP 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH