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Conserved domains on  [gi|488160665|ref|WP_002231873|]
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MULTISPECIES: ilv operon leader peptide [Yersinia pseudotuberculosis complex]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
IlvGEDA_leader pfam08046
IlvGEDA operon leader peptide; This family consists of the leader peptides of ilvGEDA operon. ...
 1-32 1.06e-04

IlvGEDA operon leader peptide; This family consists of the leader peptides of ilvGEDA operon. The expression of the ilvGEDA operon of E coli K-12 is multivalently controlled by the three branched -chain amino acids. Regulation is thought to occur by attenuation of transcription in response to the changing levels of the cognate tRNAs. Transcription of this operon is usually terminated at the end of the leader (regulatory) region.


:

Pssm-ID: 429803  Cd Length: 32  Bit Score: 33.77  E-value: 1.06e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 488160665   1 MKAILQVINLVLISVVVIIIPPCGAALGRRKA 32
Cdd:pfam08046  1 MKAILQVINLVLISVVVIIIPPCGAALGRRKA 32
 
Name Accession Description Interval E-value
IlvGEDA_leader pfam08046
IlvGEDA operon leader peptide; This family consists of the leader peptides of ilvGEDA operon. ...
 1-32 1.06e-04

IlvGEDA operon leader peptide; This family consists of the leader peptides of ilvGEDA operon. The expression of the ilvGEDA operon of E coli K-12 is multivalently controlled by the three branched -chain amino acids. Regulation is thought to occur by attenuation of transcription in response to the changing levels of the cognate tRNAs. Transcription of this operon is usually terminated at the end of the leader (regulatory) region.


Pssm-ID: 429803  Cd Length: 32  Bit Score: 33.77  E-value: 1.06e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 488160665   1 MKAILQVINLVLISVVVIIIPPCGAALGRRKA 32
Cdd:pfam08046  1 MKAILQVINLVLISVVVIIIPPCGAALGRRKA 32
PRK10424 PRK10424
ilv operon leader peptide;
1-32 2.11e-03

ilv operon leader peptide;


Pssm-ID: 170429  Cd Length: 32  Bit Score: 30.56  E-value: 2.11e-03
                        10        20        30
                ....*....|....*....|....*....|..
gi 488160665  1 MKAILQVINLVLISVVVIIIPPCGAALGRRKA 32
Cdd:PRK10424  1 MTALLRVISLVVISVVVIIIPPCGAALGRGKA 32
 
Name Accession Description Interval E-value
IlvGEDA_leader pfam08046
IlvGEDA operon leader peptide; This family consists of the leader peptides of ilvGEDA operon. ...
 1-32 1.06e-04

IlvGEDA operon leader peptide; This family consists of the leader peptides of ilvGEDA operon. The expression of the ilvGEDA operon of E coli K-12 is multivalently controlled by the three branched -chain amino acids. Regulation is thought to occur by attenuation of transcription in response to the changing levels of the cognate tRNAs. Transcription of this operon is usually terminated at the end of the leader (regulatory) region.


Pssm-ID: 429803  Cd Length: 32  Bit Score: 33.77  E-value: 1.06e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 488160665   1 MKAILQVINLVLISVVVIIIPPCGAALGRRKA 32
Cdd:pfam08046  1 MKAILQVINLVLISVVVIIIPPCGAALGRRKA 32
PRK10424 PRK10424
ilv operon leader peptide;
1-32 2.11e-03

ilv operon leader peptide;


Pssm-ID: 170429  Cd Length: 32  Bit Score: 30.56  E-value: 2.11e-03
                        10        20        30
                ....*....|....*....|....*....|..
gi 488160665  1 MKAILQVINLVLISVVVIIIPPCGAALGRRKA 32
Cdd:PRK10424  1 MTALLRVISLVVISVVVIIIPPCGAALGRGKA 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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