Na(+)-translocating NADH-quinone reductase subunit D is part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD [Energy production and ...
1-208
1.50e-138
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD [Energy production and conversion]; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD is part of the Pathway/BioSystem: Na+-translocating NADH dehydrogenase
:
Pssm-ID: 440958 Cd Length: 208 Bit Score: 385.69 E-value: 1.50e-138
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD [Energy production and ...
1-208
1.50e-138
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD [Energy production and conversion]; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD is part of the Pathway/BioSystem: Na+-translocating NADH dehydrogenase
Pssm-ID: 440958 Cd Length: 208 Bit Score: 385.69 E-value: 1.50e-138
NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit; This model represents the NqrD ...
5-207
2.26e-107
NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit; This model represents the NqrD subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130994 Cd Length: 207 Bit Score: 306.66 E-value: 2.26e-107
Rnf-Nqr subunit, membrane protein; This is a family of integral membrane proteins including ...
7-194
7.45e-72
Rnf-Nqr subunit, membrane protein; This is a family of integral membrane proteins including Rhodobacter-specific nitrogen fixation (rnf) proteins RnfA and RnfE and Na+-translocating NADH:ubiquinone oxidoreductase (Na+-NQR) subunits NqrD and NqrE.
Pssm-ID: 460575 Cd Length: 181 Bit Score: 215.75 E-value: 7.45e-72
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD [Energy production and ...
1-208
1.50e-138
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD [Energy production and conversion]; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD is part of the Pathway/BioSystem: Na+-translocating NADH dehydrogenase
Pssm-ID: 440958 Cd Length: 208 Bit Score: 385.69 E-value: 1.50e-138
NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit; This model represents the NqrD ...
5-207
2.26e-107
NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit; This model represents the NqrD subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130994 Cd Length: 207 Bit Score: 306.66 E-value: 2.26e-107
Rnf-Nqr subunit, membrane protein; This is a family of integral membrane proteins including ...
7-194
7.45e-72
Rnf-Nqr subunit, membrane protein; This is a family of integral membrane proteins including Rhodobacter-specific nitrogen fixation (rnf) proteins RnfA and RnfE and Na+-translocating NADH:ubiquinone oxidoreductase (Na+-NQR) subunits NqrD and NqrE.
Pssm-ID: 460575 Cd Length: 181 Bit Score: 215.75 E-value: 7.45e-72
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfE subunit [Energy production and ...
15-202
2.52e-67
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfE subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfE subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase
Pssm-ID: 443698 Cd Length: 209 Bit Score: 205.37 E-value: 2.52e-67
electron transport complex, RnfABCDGE type, E subunit; The six subunit complex RnfABCDGE in ...
15-195
4.88e-53
electron transport complex, RnfABCDGE type, E subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the E subunit. [Energy metabolism, Electron transport]
Pssm-ID: 162619 Cd Length: 196 Bit Score: 168.67 E-value: 4.88e-53
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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