NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|488148785|ref|WP_002219993|]
View 

MULTISPECIES: SMI1/KNR4 family protein [Neisseria]

Protein Classification

SMI1/KNR4 family protein( domain architecture ID 4183)

SMI1/KNR4 family protein may be involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation

CATH:  3.40.1580.10
Gene Ontology:  GO:0042546
PubMed:  31075979|8289782
SCOP:  4002285

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SMI1_KNR4 super family cl01747
SMI1 / KNR4 family (SUKH-1); Proteins in this family are involved in the regulation of 1, ...
 56-117 1.03e-03

SMI1 / KNR4 family (SUKH-1); Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation. Genome contextual information showed that SMI1 are primary immunity proteins in bacterial toxin systems.


The actual alignment was detected with superfamily member pfam09346:

Pssm-ID: 445532  Cd Length: 120  Bit Score: 36.26  E-value: 1.03e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488148785   56 EVAYIFRNSILPDlNLIPFASNG-EWEAYFDGNDVTGNPRVIVINLDNIENHEFFNSFEEWLE 117
Cdd:pfam09346  58 DSLYFIREWGLPE-GLIPFADDGgGDYLCLDLRDGGEEGQVYFWDEDDDELKLVADSFEEFLE 119
 
Name Accession Description Interval E-value
SMI1_KNR4 pfam09346
SMI1 / KNR4 family (SUKH-1); Proteins in this family are involved in the regulation of 1, ...
 56-117 1.03e-03

SMI1 / KNR4 family (SUKH-1); Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation. Genome contextual information showed that SMI1 are primary immunity proteins in bacterial toxin systems.


Pssm-ID: 430545  Cd Length: 120  Bit Score: 36.26  E-value: 1.03e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488148785   56 EVAYIFRNSILPDlNLIPFASNG-EWEAYFDGNDVTGNPRVIVINLDNIENHEFFNSFEEWLE 117
Cdd:pfam09346  58 DSLYFIREWGLPE-GLIPFADDGgGDYLCLDLRDGGEEGQVYFWDEDDDELKLVADSFEEFLE 119
 
Name Accession Description Interval E-value
SMI1_KNR4 pfam09346
SMI1 / KNR4 family (SUKH-1); Proteins in this family are involved in the regulation of 1, ...
 56-117 1.03e-03

SMI1 / KNR4 family (SUKH-1); Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation. Genome contextual information showed that SMI1 are primary immunity proteins in bacterial toxin systems.


Pssm-ID: 430545  Cd Length: 120  Bit Score: 36.26  E-value: 1.03e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488148785   56 EVAYIFRNSILPDlNLIPFASNG-EWEAYFDGNDVTGNPRVIVINLDNIENHEFFNSFEEWLE 117
Cdd:pfam09346  58 DSLYFIREWGLPE-GLIPFADDGgGDYLCLDLRDGGEEGQVYFWDEDDDELKLVADSFEEFLE 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH