|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10918 |
PRK10918 |
phosphate ABC transporter substrate-binding protein PstS; |
1-346 |
0e+00 |
|
phosphate ABC transporter substrate-binding protein PstS;
Pssm-ID: 182837 Cd Length: 346 Bit Score: 718.92 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 1 MKLMRTTVASIVAATLSMTAVSAFAAASLTGAGATFPAPVYAKWADSYQKETGNKINYQGIGSSGGVKQIIANTVDFGAS 80
Cdd:PRK10918 1 MKVMRTTVATVVAATLSMSAFSAFAAASLTGAGATFPAPVYAKWADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 81 DAPLTDEKLATEGLFQFPTVIGGVVLAVNIPGIKSGELTLDGKTLGDIYLGTVKKWNDPAIVKLNPGVKLPDQNIAVVRR 160
Cdd:PRK10918 81 DAPLSDEKLAQEGLFQFPTVIGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWNDEAIAKLNPGVKLPSQNIAVVRR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 161 ADGSGTSFVFTSYLAKVNAEWKEKVGAGSTVNWPTGLGGKGNDGIAAFVQRLPGSIGYVEYAYAKQNNLAYTKLISADGK 240
Cdd:PRK10918 161 ADGSGTSFVFTSYLAKVNEEWKSKVGAGSTVNWPTGLGGKGNDGIAAFVQRLPGAIGYVEYAYAKQNNLAYTKLISADGK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 241 PVSPTEHSFSSAAKGVDWSKSFAQDLTNQKGDDVWPITSTTFILVHKEQKNAANGTEVLKFFDWGYTHGAKQANELDYAT 320
Cdd:PRK10918 241 PVSPTEESFSNAAKGADWSKSFAQDLTNQKGDDAWPITSTTFILVHKDQKKPEQGAEVLKFFDWAYKNGAKQANDLDYAS 320
|
330 340
....*....|....*....|....*.
gi 488144349 321 LPAEVVEQVRAAWKTQIKDSSGKPIF 346
Cdd:PRK10918 321 LPDSVVEQVRAAWKTNIKDSSGKPLY 346
|
|
| 3a0107s03 |
TIGR00975 |
phosphate ABC transporter, phosphate-binding protein; This family represents one type of ... |
29-335 |
1.26e-141 |
|
phosphate ABC transporter, phosphate-binding protein; This family represents one type of (periplasmic, in Gram-negative bacteria) phosphate-binding protein found in phosphate ABC (ATP-binding cassette) transporters. This protein is accompanied, generally in the same operon, by an ATP binding protein and (usually) two permease proteins. [Transport and binding proteins, Anions]
Pssm-ID: 273374 [Multi-domain] Cd Length: 313 Bit Score: 403.36 E-value: 1.26e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 29 LTGAGATFPAPVYAKWADSYQKET-GNKINYQGIGSSGGVKQIIANTVDFGASDAPLTDEKLAT--EGLFQFPTVIGGVV 105
Cdd:TIGR00975 1 LTGAGSTFPAPLYTKWFPDFQKSNpGVTINYQGIGSGAGIAQFAAGTVDFGASDAPLSEADLAAagSGLLNFPTVIGAIV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 106 LAVNIPGIKSgELTLDGKTLGDIYLGTVKKWNDPAIVKLNPGVKLPDQNIAVVRRADGSGTSFVFTSYLAKVNAEWKEKV 185
Cdd:TIGR00975 81 VTYNLPGVSE-KLKLDGPVLAKIFLGKIKQWNDPAIAALNPGVKLPGTAITVVHRSDGSGTTFNFTNYLSKVSPEWGKKV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 186 GAGSTVNWPTGLGGKGNDGIAAFVQRLPGSIGYVEYAYAKQNNLAYTKLISADGKPVSPTEHSFSSAAKGVDWS--KSFA 263
Cdd:TIGR00975 160 GAGKTVQWPAGVGGKGNDGVVAGVKQTPGAIGYVEWSFAKQNKLSFAALKNSAGKFVLPDAESIKAAAAGAKIStpKNDA 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488144349 264 QDLTNQKGDDVWPITSTTFILVHKEQKNAANGTEVLKFFDWGYTHGAKQANELDYATLPAEVVEQVRAAWKT 335
Cdd:TIGR00975 240 ISMTDPPGPGAYPIVSYTYLIVYKKQKDPAKAKALKAFLTWAITNGQSFLDDLGYIPLPPSVVKRVRTAVNT 311
|
|
| PBP2_PstS |
cd13565 |
Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 ... |
26-317 |
2.73e-122 |
|
Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily; This subfamily contians phosphate binding domain found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Pssm-ID: 270283 [Multi-domain] Cd Length: 254 Bit Score: 351.92 E-value: 2.73e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 26 AASLTGAGATFPAPVYAKWADSYQKET-GNKINYQGIGSSGGVKQIIANTVDFGASDAPLTDEKLATE--GLFQFPTVIG 102
Cdd:cd13565 1 AVTLTGAGATFPAPLYQKWIDEYKKAHpGVKINYQSIGSGAGIKQFIAGTVDFGASDAPLSDAELAKAggGLLQIPTVIG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 103 GVVLAVNIPGIKSGELtLDGKTLGDIYLGTVKKWNDPAIVKLNPGVKLPDQNIAVVRRADGSGTSFVFTSYLAKVNAEWK 182
Cdd:cd13565 81 AVVVAYNLPGVKGLLL-LSGEVLADIFLGKITKWNDPAIAALNPGVNLPDTPITVVHRSDGSGTTFIFTDYLSAVSPEWK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 183 EKVGAGSTVNWPTGLGGKGNDGIAAFVQRLPGSIGYVEYAYAKQNNLAYTKLisadgkpvsptehsfssaakgvdwsksf 262
Cdd:cd13565 160 DKVGAGKSVAWPVGLGGKGNEGVAAAVKQTPGSIGYVELSYALQNGLPAAAL---------------------------- 211
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 488144349 263 aqdltnqkgddvWPITSTTFILVHKEQKNAANGTEVLKFFDWGYTHGAKQANELD 317
Cdd:cd13565 212 ------------YPIVGFTYILVKKDYKDAEKAKAVKKFLKWALTEGQKFAADLG 254
|
|
| PstS |
COG0226 |
ABC-type phosphate transport system, periplasmic component [Inorganic ion transport and ... |
25-334 |
1.42e-83 |
|
ABC-type phosphate transport system, periplasmic component [Inorganic ion transport and metabolism];
Pssm-ID: 439996 [Multi-domain] Cd Length: 275 Bit Score: 254.42 E-value: 1.42e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 25 AAASLTGAGATFPAPVYAKWADSYQKE-TGNKINYQGIGSSGGVKQIIANTVDFGASDAPLTDEKLAT-----EGLFQFP 98
Cdd:COG0226 2 ASGTITIAGSSTVYPLAEAWAEAFQKAnPGVTINVQSGGSGGGIKQFIAGTVDIGNSSRPLKDEELEAakengVELVEIP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 99 TVIGGVVLAVNipgiKSGELT-LDGKTLGDIYLGTVKKWNDpaivkLNPgvKLPDQNIAVVRRADGSGTSFVFTSYLAKV 177
Cdd:COG0226 82 VAIDGIAVVVN----PDNPVKnLTGEQLADIFSGKITNWND-----IGG--KLPDEPITVVGRSDGSGTTDYFTEYLLGV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 178 NAEWkekvgagstvnWPTGLGGKGNDGIAAFVQRLPGSIGYVEYAYAKQNNLAYTKLISADGKPVSPTEHSFSSAAkgvd 257
Cdd:COG0226 151 GAEV-----------REGVEGAEGNEGVVQAVAQTPGAIGYVGLSYAEQNKLKALAIDNKAGKFVEPTAENIAAGS---- 215
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488144349 258 wsksfaqdltnqkgddvWPITSTTFILVHKeqKNAANGTEVLKFFDWGYTHGAKQ-ANELDYATLPAEVVEQVRAAWK 334
Cdd:COG0226 216 -----------------YPLSRPLYIYVKK--EPDAKAPAVKAFLDFVLSDGGQKiVEKLGYVPLPDAVVEKVRAALK 274
|
|
| PBP_like_2 |
pfam12849 |
PBP superfamily domain; This domain belongs to the periplasmic binding protein superfamily. |
19-304 |
2.03e-36 |
|
PBP superfamily domain; This domain belongs to the periplasmic binding protein superfamily.
Pssm-ID: 432831 [Multi-domain] Cd Length: 267 Bit Score: 132.28 E-value: 2.03e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 19 TAVSAFAAASLTGAGATFPAPVYAKWADSYQKE-TGNKINYQGIGSSGGVKQIIANTVDFGASDAPLTDEKLATE----- 92
Cdd:pfam12849 2 AAASAPTVGTILIAGSSTQAPGLLDLAEAFEKKyPGAKVKVTSVGSGEGIKALLNGDVDVALVSRPLTEEEFEAFganga 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 93 -GLFQFPTVIGGVVLAVNIPGiksGELTLDGKTLGDIYLGTVKKWNDPaivklnpgvkLPDQNIAVVRRADGSGTSFVFT 171
Cdd:pfam12849 82 gGLVEVPVAYDGIAIVVNKDN---PANILTVEALKKIFSGKITNWNDG----------GPDGPIKFVSRGDNSGTTELFS 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 172 SYLakvNAEWKEKVGagstvnwptGLGGKGNDGIAAfVQRLPGSIGYVEYAYAKQNNLAytKLISADGKPVSPTEhsfsS 251
Cdd:pfam12849 149 THL---KEKGPWGAA---------GIGAAGSPGVAS-VVAGPGAIGYVEVSYALANLGY--TLADVAGGTYLSFA----K 209
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 488144349 252 AAKGVDWSKSFAQDLTNQKG--DDVWPITSTTFILVHKEQKNAAngTEVLKFFDW 304
Cdd:pfam12849 210 ALKVAKINPGAGLVIPLEEAiaDGDYPLSRPYYVIVKNPPKGPA--PLAKAFLDF 262
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10918 |
PRK10918 |
phosphate ABC transporter substrate-binding protein PstS; |
1-346 |
0e+00 |
|
phosphate ABC transporter substrate-binding protein PstS;
Pssm-ID: 182837 Cd Length: 346 Bit Score: 718.92 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 1 MKLMRTTVASIVAATLSMTAVSAFAAASLTGAGATFPAPVYAKWADSYQKETGNKINYQGIGSSGGVKQIIANTVDFGAS 80
Cdd:PRK10918 1 MKVMRTTVATVVAATLSMSAFSAFAAASLTGAGATFPAPVYAKWADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 81 DAPLTDEKLATEGLFQFPTVIGGVVLAVNIPGIKSGELTLDGKTLGDIYLGTVKKWNDPAIVKLNPGVKLPDQNIAVVRR 160
Cdd:PRK10918 81 DAPLSDEKLAQEGLFQFPTVIGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWNDEAIAKLNPGVKLPSQNIAVVRR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 161 ADGSGTSFVFTSYLAKVNAEWKEKVGAGSTVNWPTGLGGKGNDGIAAFVQRLPGSIGYVEYAYAKQNNLAYTKLISADGK 240
Cdd:PRK10918 161 ADGSGTSFVFTSYLAKVNEEWKSKVGAGSTVNWPTGLGGKGNDGIAAFVQRLPGAIGYVEYAYAKQNNLAYTKLISADGK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 241 PVSPTEHSFSSAAKGVDWSKSFAQDLTNQKGDDVWPITSTTFILVHKEQKNAANGTEVLKFFDWGYTHGAKQANELDYAT 320
Cdd:PRK10918 241 PVSPTEESFSNAAKGADWSKSFAQDLTNQKGDDAWPITSTTFILVHKDQKKPEQGAEVLKFFDWAYKNGAKQANDLDYAS 320
|
330 340
....*....|....*....|....*.
gi 488144349 321 LPAEVVEQVRAAWKTQIKDSSGKPIF 346
Cdd:PRK10918 321 LPDSVVEQVRAAWKTNIKDSSGKPLY 346
|
|
| 3a0107s03 |
TIGR00975 |
phosphate ABC transporter, phosphate-binding protein; This family represents one type of ... |
29-335 |
1.26e-141 |
|
phosphate ABC transporter, phosphate-binding protein; This family represents one type of (periplasmic, in Gram-negative bacteria) phosphate-binding protein found in phosphate ABC (ATP-binding cassette) transporters. This protein is accompanied, generally in the same operon, by an ATP binding protein and (usually) two permease proteins. [Transport and binding proteins, Anions]
Pssm-ID: 273374 [Multi-domain] Cd Length: 313 Bit Score: 403.36 E-value: 1.26e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 29 LTGAGATFPAPVYAKWADSYQKET-GNKINYQGIGSSGGVKQIIANTVDFGASDAPLTDEKLAT--EGLFQFPTVIGGVV 105
Cdd:TIGR00975 1 LTGAGSTFPAPLYTKWFPDFQKSNpGVTINYQGIGSGAGIAQFAAGTVDFGASDAPLSEADLAAagSGLLNFPTVIGAIV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 106 LAVNIPGIKSgELTLDGKTLGDIYLGTVKKWNDPAIVKLNPGVKLPDQNIAVVRRADGSGTSFVFTSYLAKVNAEWKEKV 185
Cdd:TIGR00975 81 VTYNLPGVSE-KLKLDGPVLAKIFLGKIKQWNDPAIAALNPGVKLPGTAITVVHRSDGSGTTFNFTNYLSKVSPEWGKKV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 186 GAGSTVNWPTGLGGKGNDGIAAFVQRLPGSIGYVEYAYAKQNNLAYTKLISADGKPVSPTEHSFSSAAKGVDWS--KSFA 263
Cdd:TIGR00975 160 GAGKTVQWPAGVGGKGNDGVVAGVKQTPGAIGYVEWSFAKQNKLSFAALKNSAGKFVLPDAESIKAAAAGAKIStpKNDA 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488144349 264 QDLTNQKGDDVWPITSTTFILVHKEQKNAANGTEVLKFFDWGYTHGAKQANELDYATLPAEVVEQVRAAWKT 335
Cdd:TIGR00975 240 ISMTDPPGPGAYPIVSYTYLIVYKKQKDPAKAKALKAFLTWAITNGQSFLDDLGYIPLPPSVVKRVRTAVNT 311
|
|
| PBP2_PstS |
cd13565 |
Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 ... |
26-317 |
2.73e-122 |
|
Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily; This subfamily contians phosphate binding domain found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Pssm-ID: 270283 [Multi-domain] Cd Length: 254 Bit Score: 351.92 E-value: 2.73e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 26 AASLTGAGATFPAPVYAKWADSYQKET-GNKINYQGIGSSGGVKQIIANTVDFGASDAPLTDEKLATE--GLFQFPTVIG 102
Cdd:cd13565 1 AVTLTGAGATFPAPLYQKWIDEYKKAHpGVKINYQSIGSGAGIKQFIAGTVDFGASDAPLSDAELAKAggGLLQIPTVIG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 103 GVVLAVNIPGIKSGELtLDGKTLGDIYLGTVKKWNDPAIVKLNPGVKLPDQNIAVVRRADGSGTSFVFTSYLAKVNAEWK 182
Cdd:cd13565 81 AVVVAYNLPGVKGLLL-LSGEVLADIFLGKITKWNDPAIAALNPGVNLPDTPITVVHRSDGSGTTFIFTDYLSAVSPEWK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 183 EKVGAGSTVNWPTGLGGKGNDGIAAFVQRLPGSIGYVEYAYAKQNNLAYTKLisadgkpvsptehsfssaakgvdwsksf 262
Cdd:cd13565 160 DKVGAGKSVAWPVGLGGKGNEGVAAAVKQTPGSIGYVELSYALQNGLPAAAL---------------------------- 211
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 488144349 263 aqdltnqkgddvWPITSTTFILVHKEQKNAANGTEVLKFFDWGYTHGAKQANELD 317
Cdd:cd13565 212 ------------YPIVGFTYILVKKDYKDAEKAKAVKKFLKWALTEGQKFAADLG 254
|
|
| PBP2_phosphate_binding |
cd01006 |
Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 ... |
26-317 |
1.02e-113 |
|
Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily; This phosphate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Pssm-ID: 270227 [Multi-domain] Cd Length: 253 Bit Score: 330.38 E-value: 1.02e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 26 AASLTGAGATFPAPVYAKWADSYQKET-GNKINYQGIGSSGGVKQIIANTVDFGASDAPLTDEKLATEGLFQFPTVIGGV 104
Cdd:cd01006 1 ASELTISGSTSVAPI*DVWAEKYNQQHpETYVAVQGVGSTAGISQLKAGTVDIGASDAYLSESEAANKGLHTFTLAIDGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 105 VLAVNIPGIKSGeLTLDGKTLGDIYLGTVKKWNDPAIVKLNPGVKLPDQNIAVVRRADGSGTSFVFTSYLAKVNAEWKEK 184
Cdd:cd01006 81 AIVVNQPGPVTN-LTLNGKQLYGIYKGQIKNWDDVGIAALNPGVNLPDQKIAVVTREDGSGTRFSFTSYLGKTKTEKDGK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 185 VGAGSTVNWPTGLGGKGNDGIAAFVQRLPGSIGYVEYAYAKQNNLAYTKLisadgkpvsptehsfssaakgvdwsksfaq 264
Cdd:cd01006 160 GTTEVSDVAPTALGVNGNSG*KTLVNHNPGAVGYISIGSVDQSSLKAIQL------------------------------ 209
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 488144349 265 dltnqkgddvWPITSTTFILVHKEQKNAANGTEVLKFFDWGYTHG-AKQANELD 317
Cdd:cd01006 210 ----------YPISRPFLILHYSDQKDAATDEQTKEFIAWAKSEGaAKLIVEYG 253
|
|
| PstS |
COG0226 |
ABC-type phosphate transport system, periplasmic component [Inorganic ion transport and ... |
25-334 |
1.42e-83 |
|
ABC-type phosphate transport system, periplasmic component [Inorganic ion transport and metabolism];
Pssm-ID: 439996 [Multi-domain] Cd Length: 275 Bit Score: 254.42 E-value: 1.42e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 25 AAASLTGAGATFPAPVYAKWADSYQKE-TGNKINYQGIGSSGGVKQIIANTVDFGASDAPLTDEKLAT-----EGLFQFP 98
Cdd:COG0226 2 ASGTITIAGSSTVYPLAEAWAEAFQKAnPGVTINVQSGGSGGGIKQFIAGTVDIGNSSRPLKDEELEAakengVELVEIP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 99 TVIGGVVLAVNipgiKSGELT-LDGKTLGDIYLGTVKKWNDpaivkLNPgvKLPDQNIAVVRRADGSGTSFVFTSYLAKV 177
Cdd:COG0226 82 VAIDGIAVVVN----PDNPVKnLTGEQLADIFSGKITNWND-----IGG--KLPDEPITVVGRSDGSGTTDYFTEYLLGV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 178 NAEWkekvgagstvnWPTGLGGKGNDGIAAFVQRLPGSIGYVEYAYAKQNNLAYTKLISADGKPVSPTEHSFSSAAkgvd 257
Cdd:COG0226 151 GAEV-----------REGVEGAEGNEGVVQAVAQTPGAIGYVGLSYAEQNKLKALAIDNKAGKFVEPTAENIAAGS---- 215
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488144349 258 wsksfaqdltnqkgddvWPITSTTFILVHKeqKNAANGTEVLKFFDWGYTHGAKQ-ANELDYATLPAEVVEQVRAAWK 334
Cdd:COG0226 216 -----------------YPLSRPLYIYVKK--EPDAKAPAVKAFLDFVLSDGGQKiVEKLGYVPLPDAVVEKVRAALK 274
|
|
| PBP_like_2 |
pfam12849 |
PBP superfamily domain; This domain belongs to the periplasmic binding protein superfamily. |
19-304 |
2.03e-36 |
|
PBP superfamily domain; This domain belongs to the periplasmic binding protein superfamily.
Pssm-ID: 432831 [Multi-domain] Cd Length: 267 Bit Score: 132.28 E-value: 2.03e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 19 TAVSAFAAASLTGAGATFPAPVYAKWADSYQKE-TGNKINYQGIGSSGGVKQIIANTVDFGASDAPLTDEKLATE----- 92
Cdd:pfam12849 2 AAASAPTVGTILIAGSSTQAPGLLDLAEAFEKKyPGAKVKVTSVGSGEGIKALLNGDVDVALVSRPLTEEEFEAFganga 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 93 -GLFQFPTVIGGVVLAVNIPGiksGELTLDGKTLGDIYLGTVKKWNDPaivklnpgvkLPDQNIAVVRRADGSGTSFVFT 171
Cdd:pfam12849 82 gGLVEVPVAYDGIAIVVNKDN---PANILTVEALKKIFSGKITNWNDG----------GPDGPIKFVSRGDNSGTTELFS 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 172 SYLakvNAEWKEKVGagstvnwptGLGGKGNDGIAAfVQRLPGSIGYVEYAYAKQNNLAytKLISADGKPVSPTEhsfsS 251
Cdd:pfam12849 149 THL---KEKGPWGAA---------GIGAAGSPGVAS-VVAGPGAIGYVEVSYALANLGY--TLADVAGGTYLSFA----K 209
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 488144349 252 AAKGVDWSKSFAQDLTNQKG--DDVWPITSTTFILVHKEQKNAAngTEVLKFFDW 304
Cdd:pfam12849 210 ALKVAKINPGAGLVIPLEEAiaDGDYPLSRPYYVIVKNPPKGPA--PLAKAFLDF 262
|
|
| PBP2_phosphate_like_1 |
cd13653 |
Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 ... |
26-244 |
9.02e-27 |
|
Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily; This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Pssm-ID: 270371 [Multi-domain] Cd Length: 240 Bit Score: 106.11 E-value: 9.02e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 26 AASLTGAGATFPAPVYAKWADSYQKETGN-KINYQGIGSSGGVKQIIANTVDFGASDAPLTD-EKLATEGLFQFPTVIGG 103
Cdd:cd13653 1 SGTITISGSTTVAPLAEALAEAFMEKHPGvRIEVQGGGSGTGIKALIEGTADIGMASRPLKAeEKAAASGLVEHVIALDG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 104 VVLAVNiPGIKSGELTLDgkTLGDIYLGTVKKWNDpaivklnpgVKLPDQNIAVVRRADGSGTSFVFtsylakvnaewKE 183
Cdd:cd13653 81 IAIIVN-PDNPVKNLTLE--QLRDIFSGKITNWKE---------VGGPDGPIVVISREEGSGTRETF-----------EE 137
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488144349 184 KVGAGSTVNwPTGLGGKGNDGIAAFVQRLPGSIGYVEYAYAKQNNLaytKLISADGKPVSP 244
Cdd:cd13653 138 LVLGKKDFA-KNAVVVPSNGAVVQAVAKNPNAIGYVSLGYVDDSKV---KALSVDGVAPTP 194
|
|
| PBP2_phosphate |
cd13566 |
Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 ... |
26-245 |
1.26e-24 |
|
Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily; This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Pssm-ID: 270284 [Multi-domain] Cd Length: 245 Bit Score: 100.35 E-value: 1.26e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 26 AASLTGAGATFPAPVYAKWADSYQKETGN-KINYQGIGSSGGVKQIIANTVDFGASDAPLTDE--KLATEGLFQF-PTVI 101
Cdd:cd13566 1 SGTITIAGSSTVAPLAEALAEEFMKKHPGvRVTVQGGGSGAGIKALIAGTADIAMASRPLKDEekAAAEANGIELvEFVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 102 G--GVVLAVNiPGIKSGELTLDgkTLGDIYLGTVKKWNDpaivklnpgVKLPDQNIAVVRRADGSGTSFVFTSYLAKvna 179
Cdd:cd13566 81 AydGIAVIVN-PDNPVASLTLE--QLRDIFTGKITNWSE---------VGGPDEPIVVYGRDEGSGTRDYFEELVLG--- 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488144349 180 ewKEKVGAGSTVnwptglgGKGNDGIAAFVQRLPGSIGYVEYAYAKQNNLAytKLISADGKPVSPT 245
Cdd:cd13566 146 --KGEFIRNAVV-------APSNGALVQAVAGDPNAIGYVGLGYVDENKKV--KALKVDGVAPTVE 200
|
|
| ptsS_2 |
TIGR02136 |
phosphate binding protein; Members of this family are phosphate-binding proteins. Most are ... |
8-301 |
2.91e-23 |
|
phosphate binding protein; Members of this family are phosphate-binding proteins. Most are found in phosphate ABC-transporter operons, but some are found in phosphate regulatory operons. This model separates members of the current family from the phosphate ABC transporter phosphate binding protein described by TIGRFAMs model TIGR00975. [Transport and binding proteins, Anions]
Pssm-ID: 273991 [Multi-domain] Cd Length: 287 Bit Score: 97.51 E-value: 2.91e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 8 VASIVAATLSMTAV-----SAFAAASLTGAGATFPAPVYAKWADSYQKETGN-KINYQGIGSSGGVKQIIANTVDFGASD 81
Cdd:TIGR02136 12 AAALLAAAGCGGAIdsgipDAKGSSTITIDGSTTVAPLAEAAAEEFQKIHPGvSVTVQGAGSGTGIKALINGTVDIGNSS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 82 APLTDEKLATEG-----LFQFPTVIGGVVLAVNIPGIKSGELTLDgkTLGDIYLGTVKKWNDpaivkLNPgvKLPDQNIA 156
Cdd:TIGR02136 92 RPIKDEELQKDKqkgikLIEHKVAVDGLAVVVNKKNVPVDDLTVE--QLKKIYSGEITNWKE-----VGG--DLPNKPIV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 157 VVRRADGSGTSFVFTsylakvnaewkEKVGAGSTVNwPTGLGGKGNDGIAAFVQRLPGSIGYVEYAYAKQNnlayTKLIS 236
Cdd:TIGR02136 163 VVGRNAGSGTRDTFE-----------EEVMGKAKIK-PGKNEQESNGAVVSIVSSNPGAIGYLGLGYVDDS----VKTLK 226
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488144349 237 ADGkpVSPTEHSFSSAAkgvdwsksfaqdltnqkgddvWPITSTTFILVHKEQKNAANGTEVLKF 301
Cdd:TIGR02136 227 VNG--VEPSKENIANGS---------------------YPLSRPLFMYVNGKPKKPELVAEFIDF 268
|
|
| PBP2_phosphate_like_2 |
cd13654 |
Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 ... |
38-227 |
5.85e-07 |
|
Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily; This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Pssm-ID: 270372 Cd Length: 259 Bit Score: 49.95 E-value: 5.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 38 APVYAKWADSYQKETGN-KINYQGIGSSGGVKQIIANTVDFGASDAPLTDE--KLATEG---LFQFPTVIGGVVLAVNIP 111
Cdd:cd13654 13 YPITEAVAEEFGKSGPGvTVTVGSSGTGGGFKKFCAGETDISNASRPIKDSeaELCEANgieYIELPVAYDGLTVVVNPA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 112 GIKSGELTLDGKTLGDIYLGTVKKWNDpaivkLNPGvkLPDQNIAVVRRADGSGTSFVFTSylaKVNAEWKEKVGAGStv 191
Cdd:cd13654 93 NDWAKCLTELELKSIWAAESPITTWSD-----VRPS--WPDEPIELYGPGTDSGTFDYFTE---AIVGEGGSIREDYT-- 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 488144349 192 nwptglgGKGNDG-IAAFVQRLPGSIGYVEYAYAKQN 227
Cdd:cd13654 161 -------ASEDDNvLVQGVAGDKNALGFFGYAYYEEN 190
|
|
| SBP_bac_1 |
pfam01547 |
Bacterial extracellular solute-binding protein; This family also includes the bacterial ... |
27-312 |
2.73e-06 |
|
Bacterial extracellular solute-binding protein; This family also includes the bacterial extracellular solute-binding protein family POTD/POTF.
Pssm-ID: 460248 [Multi-domain] Cd Length: 294 Bit Score: 48.18 E-value: 2.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 27 ASLTGAGATFPAPVyakwADSYQKETGNKINYQGIGSSGGVKQIianTVDFGASDAPL--------TDEKLATEGLfqfP 98
Cdd:pfam01547 1 AASLTEAAALQALV----KEFEKEHPGIKVEVESVGSGSLAQKL---TTAIAAGDGPAdvfasdndWIAELAKAGL---L 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 99 TVIGGVVLAVNIPG-IKSGELTLDGKTLGDIY---------LGTVKKWNDPAIVKLNPGVKLPdqNIAVVRRADGSGTSF 168
Cdd:pfam01547 71 LPLDDYVANYLVLGvPKLYGVPLAAETLGLIYnkdlfkkagLDPPKTWDELLEAAKKLKEKGK--SPGGAGGGDASGTLG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 169 VFTSYLAKVNAEwKEKVGAGSTVNWPTGLGGKGNDGIAAFVQRLPGSIGYVEYAYAKQNNLAytKLISADGKPVSPTEHS 248
Cdd:pfam01547 149 YFTLALLASLGG-PLFDKDGGGLDNPEAVDAITYYVDLYAKVLLLKKLKNPGVAGADGREAL--ALFEQGKAAMGIVGPW 225
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488144349 249 FSSAAKGVDWSKSFAQDLTNQKGDDVWPITSTTFILVHKEQ-----KNAANGTEVLKFFDWGYTHGAKQ 312
Cdd:pfam01547 226 AALAANKVKLKVAFAAPAPDPKGDVGYAPLPAGKGGKGGGYglaipKGSKNKEAAKKFLDFLTSPEAQA 294
|
|
| Periplasmic_Binding_Protein_Type_2 |
cd00648 |
Type 2 periplasmic binding fold superfamily; This evolutionary model and hierarchy represent ... |
29-234 |
8.03e-04 |
|
Type 2 periplasmic binding fold superfamily; This evolutionary model and hierarchy represent the ligand-binding domains found in solute binding proteins that serve as initial receptors in the transport, signal transduction and channel gating. The PBP2 proteins share the same architecture as periplasmic binding proteins type 1 (PBP1), but have a different topology. They are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The origin of PBP module can be traced across the distant phyla, including eukaryotes, archebacteria, and prokaryotes. The majority of PBP2 proteins are involved in the uptake of a variety of soluble substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the family includes ionotropic glutamate receptors and unorthodox sensor proteins involved in signal transduction. The substrate binding domain of the LysR transcriptional regulators and the oligopeptide-like transport systems also contain the type 2 periplasmic binding fold and thus they are significantly homologous to that of the PBP2; however, these two families are grouped into a separate hierarchy of the PBP2 superfamily due to the large number of protein sequences.
Pssm-ID: 270214 [Multi-domain] Cd Length: 196 Bit Score: 39.86 E-value: 8.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 29 LTGAGATFP--APVYAKWADSYQKETGNKINYQGIGSSGGV-KQIIANTVDFGASDAPLTDE----KLATEGLFQFPTV- 100
Cdd:cd00648 2 LTVASIGPPpyAGFAEDAAKQLAKETGIKVELVPGSSIGTLiEALAAGDADVAVGPIAPALEaaadKLAPGGLYIVPELy 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488144349 101 IGGVVLAVNIPGiksgeltldgktlgdiylgtvkkwndpaiVKLNPGVKLPDQNIAVVRRADGSGTSFVFTSYLAKVNAE 180
Cdd:cd00648 82 VGGYVLVVRKGS-----------------------------SIKGLLAVADLDGKRVGVGDPGSTAVRQARLALGAYGLK 132
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 488144349 181 WKEKVGAGStvnwptglggKGNDGIAAFVQRLPGSIGYVEYAYAKQNNLAYTKL 234
Cdd:cd00648 133 KKDPEVVPV----------PGTSGALAAVANGAVDAAIVWVPAAERAQLGNVQL 176
|
|
| |
