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Concise Results
Standard Results
Full Results
exodeoxyribonuclease V subunit gamma [Yersinia pestis]
Protein Classification
exodeoxyribonuclease V subunit gamma ( domain architecture ID 11485181 )
exodeoxyribonuclease V subunit gamma (RecC) is a component of the heterotrimeric RecBCD helicase/nuclease complex that is essential for double-strand DNA break repair and recombination
List of domain hits
Name
Accession
Description
Interval
E-value
recC
PRK11069 exodeoxyribonuclease V subunit gamma;
1-1123
0e+00
exodeoxyribonuclease V subunit gamma;
Pssm-ID: 236835 [Multi-domain]
Cd Length: 1122
Bit Score: 2259.05
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 1 MFTVYHSNQLD L LKAL TTA LIEREPLD N PF QQ E VV LVQSPGMAQWLQM Q LAQ Q F S IAANI V FPLPATFIWDMFTRVLPDI 80
Cdd:PRK11069 1 MFTVYHSNQLD V LKAL MVF LIEREPLD D PF EP E MI LVQSPGMAQWLQM E LAQ K F G IAANI D FPLPATFIWDMFTRVLPDI 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 81 PKESAF S KEAMTWKLM W LLP D LLE N P L F S P MKR YL S DD G D R RK IH QLAAR V ADLFDQYLVYRPEWL E SWE R GQL I EGL D D 160
Cdd:PRK11069 81 PKESAF N KEAMTWKLM T LLP Q LLE R P E F T P LRH YL T DD E D K RK LF QLAAR I ADLFDQYLVYRPEWL A SWE A GQL V EGL G D 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 161 AQ Q WQA L LW VE L TR YT R QL E QP E WHRANLYQRFI HQ L LKSDV CP Q GLPKRVFICGISALPP I YLQALQALGKHIDIHL M F 240
Cdd:PRK11069 161 AQ P WQA P LW KA L VE YT H QL G QP R WHRANLYQRFI ET L ESATT CP P GLPKRVFICGISALPP V YLQALQALGKHIDIHL L F 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 241 TNPCRY F WGDIQD YT FLAKL QS R K RRH YR E SI EL S LFR HPQQ AEQLFN T DGEQ NLS NPLLASWG R LGRD HM YLLSQ IDEI 320
Cdd:PRK11069 241 TNPCRY Y WGDIQD PA FLAKL LA R Q RRH SF E DR EL P LFR DSEN AEQLFN S DGEQ DVG NPLLASWG K LGRD NL YLLSQ LESS 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 321 QE VH AFVDIEPDNLLH G IQ H D M LELEDHAVIG TTP E TLA RSD Q KR R LD L DDRSLSFHVCHSPQREVEVL Q D H LL GL L A AD 400
Cdd:PRK11069 321 QE LD AFVDIEPDNLLH N IQ A D I LELEDHAVIG VND E EFS RSD H KR P LD P DDRSLSFHVCHSPQREVEVL H D R LL AM L E AD 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 401 P E LTPRDIIVMV V DIDSY T P Y IQA A FGNAP S ERYLPFAISDR K A S QAHP A L H AFI T LL D LP Q SRFTAE Q VLALLEVPALA 480
Cdd:PRK11069 401 P T LTPRDIIVMV A DIDSY S P F IQA V FGNAP A ERYLPFAISDR R A R QAHP V L Q AFI S LL S LP D SRFTAE D VLALLEVPALA 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 481 TK F G ITE D GLR R LRQWV G ESGIRWGLDDDNVREL S LPATGQHTWRFGLTRMLLGYAM D S T AG D WQG I LPYDESSGL A AEL 560
Cdd:PRK11069 481 AR F A ITE E GLR Y LRQWV E ESGIRWGLDDDNVREL E LPATGQHTWRFGLTRMLLGYAM E S A AG E WQG V LPYDESSGL I AEL 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 561 AG Q LA DM LM H L SQ WR QQ L G QPR E L S EWLP I CRQLLD T FF DQ D ND TEAAL V LIEQQWQ KV I GY G IA AQY P D V VPL N LLRDE 640
Cdd:PRK11069 561 AG H LA SL LM Q L NI WR RG L A QPR P L E EWLP V CRQLLD D FF LP D AE TEAAL A LIEQQWQ AI I EE G LD AQY G D A VPL S LLRDE 640
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 641 LA A RLD N ERISQRFLAGP I NFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPP Q GFDLM AK K VR RGDRSRRDDDRYLFLEAL 720
Cdd:PRK11069 641 LA Q RLD Q ERISQRFLAGP V NFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPP L GFDLM SQ K PK RGDRSRRDDDRYLFLEAL 720
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 721 LSAQQQLYISYIGRSIQDNS K R Y PSVLVSEL I EY VA QSY H LPGDE K L SA D D SA Q RV TQ HL L C W H A RMPF SAE NF IKN s E L 800
Cdd:PRK11069 721 LSAQQQLYISYIGRSIQDNS E R F PSVLVSEL L EY IG QSY C LPGDE A L NC D E SA A RV KA HL T C L H T RMPF DPQ NF QPG - E Q 799
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 801 QSYA A EWLP S A ESK G H AHP N F N QPL QA EP LA E I TLDEL V RF Y RHPVRAFFQ L RL G VNF VI EE T ELPDEEPFTLD N LSRYQ 880
Cdd:PRK11069 800 QSYA R EWLP A A SQQ G K AHP D F V QPL PF EP PE E L TLDEL Q RF W RHPVRAFFQ R RL K VNF RT EE S ELPDEEPFTLD G LSRYQ 879
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 881 F N T QLLNALI NE DD INSV F A R A RAAG V LPYG S FGE LY WE S Q QD EM VP LA EQI R SE R KENH S I E LNIEFADITV TGW IH QV 960
Cdd:PRK11069 880 L N Q QLLNALI EQ DD AERL F R R Q RAAG K LPYG A FGE IF WE T Q CQ EM QQ LA DRV R AC R QPGQ S L E IDLTLNGVQL TGW LP QV 959
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 961 Q D DGL V RWRP SI L TAV DGL L LWLEHLVYC SA GG E GESR IY GRK GTA WR YA P M AA DE A RP YL Q QLI K GY QQ G LCE PL M LL S 1040
Cdd:PRK11069 960 Q P DGL L RWRP GL L SVA DGL Q LWLEHLVYC AS GG N GESR LF GRK EGE WR FP P L AA EQ A KQ YL S QLI E GY RE G MSA PL L LL P 1039
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 1041 KSG W AWL SQ C F DRE SGQ IL W DEETQ G KAR M KLLQ V W Q G DQR V T GEG E D H YIQR VC R RM D NQH L DI I LHETE RYLLP IA R H 1120
Cdd:PRK11069 1040 KSG G AWL KA C Y DRE NDA IL D DEETQ Q KAR K KLLQ A W E G NMM V R GEG D D I YIQR LW R QL D DET L EA I IEQAQ RYLLP LF R F 1119
...
gi 488140419 1121 N KA 1123
Cdd:PRK11069 1120 N QS 1122
Name
Accession
Description
Interval
E-value
recC
PRK11069 exodeoxyribonuclease V subunit gamma;
1-1123
0e+00
exodeoxyribonuclease V subunit gamma;
Pssm-ID: 236835 [Multi-domain]
Cd Length: 1122
Bit Score: 2259.05
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 1 MFTVYHSNQLD L LKAL TTA LIEREPLD N PF QQ E VV LVQSPGMAQWLQM Q LAQ Q F S IAANI V FPLPATFIWDMFTRVLPDI 80
Cdd:PRK11069 1 MFTVYHSNQLD V LKAL MVF LIEREPLD D PF EP E MI LVQSPGMAQWLQM E LAQ K F G IAANI D FPLPATFIWDMFTRVLPDI 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 81 PKESAF S KEAMTWKLM W LLP D LLE N P L F S P MKR YL S DD G D R RK IH QLAAR V ADLFDQYLVYRPEWL E SWE R GQL I EGL D D 160
Cdd:PRK11069 81 PKESAF N KEAMTWKLM T LLP Q LLE R P E F T P LRH YL T DD E D K RK LF QLAAR I ADLFDQYLVYRPEWL A SWE A GQL V EGL G D 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 161 AQ Q WQA L LW VE L TR YT R QL E QP E WHRANLYQRFI HQ L LKSDV CP Q GLPKRVFICGISALPP I YLQALQALGKHIDIHL M F 240
Cdd:PRK11069 161 AQ P WQA P LW KA L VE YT H QL G QP R WHRANLYQRFI ET L ESATT CP P GLPKRVFICGISALPP V YLQALQALGKHIDIHL L F 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 241 TNPCRY F WGDIQD YT FLAKL QS R K RRH YR E SI EL S LFR HPQQ AEQLFN T DGEQ NLS NPLLASWG R LGRD HM YLLSQ IDEI 320
Cdd:PRK11069 241 TNPCRY Y WGDIQD PA FLAKL LA R Q RRH SF E DR EL P LFR DSEN AEQLFN S DGEQ DVG NPLLASWG K LGRD NL YLLSQ LESS 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 321 QE VH AFVDIEPDNLLH G IQ H D M LELEDHAVIG TTP E TLA RSD Q KR R LD L DDRSLSFHVCHSPQREVEVL Q D H LL GL L A AD 400
Cdd:PRK11069 321 QE LD AFVDIEPDNLLH N IQ A D I LELEDHAVIG VND E EFS RSD H KR P LD P DDRSLSFHVCHSPQREVEVL H D R LL AM L E AD 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 401 P E LTPRDIIVMV V DIDSY T P Y IQA A FGNAP S ERYLPFAISDR K A S QAHP A L H AFI T LL D LP Q SRFTAE Q VLALLEVPALA 480
Cdd:PRK11069 401 P T LTPRDIIVMV A DIDSY S P F IQA V FGNAP A ERYLPFAISDR R A R QAHP V L Q AFI S LL S LP D SRFTAE D VLALLEVPALA 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 481 TK F G ITE D GLR R LRQWV G ESGIRWGLDDDNVREL S LPATGQHTWRFGLTRMLLGYAM D S T AG D WQG I LPYDESSGL A AEL 560
Cdd:PRK11069 481 AR F A ITE E GLR Y LRQWV E ESGIRWGLDDDNVREL E LPATGQHTWRFGLTRMLLGYAM E S A AG E WQG V LPYDESSGL I AEL 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 561 AG Q LA DM LM H L SQ WR QQ L G QPR E L S EWLP I CRQLLD T FF DQ D ND TEAAL V LIEQQWQ KV I GY G IA AQY P D V VPL N LLRDE 640
Cdd:PRK11069 561 AG H LA SL LM Q L NI WR RG L A QPR P L E EWLP V CRQLLD D FF LP D AE TEAAL A LIEQQWQ AI I EE G LD AQY G D A VPL S LLRDE 640
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 641 LA A RLD N ERISQRFLAGP I NFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPP Q GFDLM AK K VR RGDRSRRDDDRYLFLEAL 720
Cdd:PRK11069 641 LA Q RLD Q ERISQRFLAGP V NFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPP L GFDLM SQ K PK RGDRSRRDDDRYLFLEAL 720
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 721 LSAQQQLYISYIGRSIQDNS K R Y PSVLVSEL I EY VA QSY H LPGDE K L SA D D SA Q RV TQ HL L C W H A RMPF SAE NF IKN s E L 800
Cdd:PRK11069 721 LSAQQQLYISYIGRSIQDNS E R F PSVLVSEL L EY IG QSY C LPGDE A L NC D E SA A RV KA HL T C L H T RMPF DPQ NF QPG - E Q 799
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 801 QSYA A EWLP S A ESK G H AHP N F N QPL QA EP LA E I TLDEL V RF Y RHPVRAFFQ L RL G VNF VI EE T ELPDEEPFTLD N LSRYQ 880
Cdd:PRK11069 800 QSYA R EWLP A A SQQ G K AHP D F V QPL PF EP PE E L TLDEL Q RF W RHPVRAFFQ R RL K VNF RT EE S ELPDEEPFTLD G LSRYQ 879
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 881 F N T QLLNALI NE DD INSV F A R A RAAG V LPYG S FGE LY WE S Q QD EM VP LA EQI R SE R KENH S I E LNIEFADITV TGW IH QV 960
Cdd:PRK11069 880 L N Q QLLNALI EQ DD AERL F R R Q RAAG K LPYG A FGE IF WE T Q CQ EM QQ LA DRV R AC R QPGQ S L E IDLTLNGVQL TGW LP QV 959
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 961 Q D DGL V RWRP SI L TAV DGL L LWLEHLVYC SA GG E GESR IY GRK GTA WR YA P M AA DE A RP YL Q QLI K GY QQ G LCE PL M LL S 1040
Cdd:PRK11069 960 Q P DGL L RWRP GL L SVA DGL Q LWLEHLVYC AS GG N GESR LF GRK EGE WR FP P L AA EQ A KQ YL S QLI E GY RE G MSA PL L LL P 1039
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 1041 KSG W AWL SQ C F DRE SGQ IL W DEETQ G KAR M KLLQ V W Q G DQR V T GEG E D H YIQR VC R RM D NQH L DI I LHETE RYLLP IA R H 1120
Cdd:PRK11069 1040 KSG G AWL KA C Y DRE NDA IL D DEETQ Q KAR K KLLQ A W E G NMM V R GEG D D I YIQR LW R QL D DET L EA I IEQAQ RYLLP LF R F 1119
...
gi 488140419 1121 N KA 1123
Cdd:PRK11069 1120 N QS 1122
RecC
COG1330 Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V) [Replication, ...
1-1123
0e+00
Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440941 [Multi-domain]
Cd Length: 1087
Bit Score: 1590.25
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 1 M FTV YHSN Q L DL L KA L TT AL IERE PL DN PF QQ EV V LVQSPGMA Q WLQ MQ LA QQ F S IAANI V FPLPA T FIW DM F TR VLPD I 80
Cdd:COG1330 1 M LHL YHSN R L EV L AD L LA AL LAAQ PL AD PF AP EV I LVQSPGMA R WLQ LE LA ER F G IAANI E FPLPA S FIW QL F RA VLPD V 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 81 P K ES A FSKEA M TW K LM W LLP D LL EN P L F S P MK RYL S DD G D R RK IH QLA A R V ADLFDQYLVYRP E WL ES WE R G QLIE - G L D 159
Cdd:COG1330 81 P E ES P FSKEA L TW R LM R LLP E LL DE P E F A P LA RYL G DD E D Q RK RY QLA G R L ADLFDQYLVYRP D WL AA WE A G EDVD g P L P 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 160 D A Q Q WQA L LW VE L TRY T RQ L e Q PE WHRANLYQRFI HQ L LKSDVC P Q GLP K RVF IC GISALPP I YL QA LQAL GK HID I HL M 239
Cdd:COG1330 161 D D Q A WQA A LW RA L VAE T GA L - Q SA WHRANLYQRFI AA L RSGEPR P A GLP E RVF VF GISALPP V YL EV LQAL AR HID V HL F 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 240 FT NPCR YF WGDI Q D YTF LA K L QS R K rrhyresielslfrhpqqaeqlf NT D GEQNLS NPLLASWG RL GRD HMY LL SQIDE 319
Cdd:COG1330 240 LL NPCR EY WGDI V D ARE LA R L AA R S ----------------------- DD D DLLEVG NPLLASWG KQ GRD FLD LL AELED 296
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 320 - I QE VH AFVD IE PD N LLH GI Q H D M LEL EDH A VIG ttpetlarsd Q KR R L DL DDRSL SF H V CHSP Q REVEVL Q D H LL G L L A 398
Cdd:COG1330 297 e S QE ID AFVD PP PD T LLH QL Q A D I LEL RPP A EGA ---------- S KR P L AP DDRSL QV H A CHSP L REVEVL H D Q LL A L F A 366
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 399 A DP E LTPRDI I VMV V DI DS Y T PYIQA A FG N AP S - E R YL PF A I S DR K A S Q AH P A L H AF IT LLDLPQSRFTA EQ VL A LLEVP 477
Cdd:COG1330 367 D DP T LTPRDI L VMV P DI EA Y A PYIQA V FG Q AP P d P R RI PF S I A DR S A R Q EN P L L A AF LQ LLDLPQSRFTA SE VL D LLEVP 446
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 478 A L A TK FG IT ED G L R RLR Q WV G E S GIRWGLD DDNVRE L S LPAT G Q H TWRFGL T R M LLGYAM DST AG D WQGILPYDE SS GL A 557
Cdd:COG1330 447 A V A RR FG LD ED D L E RLR R WV A E A GIRWGLD AAHRAR L G LPAT E Q N TWRFGL D R L LLGYAM GEE AG L WQGILPYDE VE GL D 526
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 558 AEL A G Q LA DM L MH L SQ WRQ Q L GQ PR E L S EWL PIC R Q LLD T FF DQ D NDT E A AL VLIEQQWQKVIGYGIA A Q Y PDVV PL NLL 637
Cdd:COG1330 527 AEL L G R LA EF L DR L AA WRQ R L AE PR T L A EWL ERL R A LLD D FF AP D EED E W AL AQLRRALAELAEQAAE A G Y DEPL PL AVV 606
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 638 RD E LAARLD NERIS QRFLAG PIN FCTLMPMRSIPF K VVCLLGMNDG VY PR TL PP Q GFDLMA KKV RRGDRSRRDDDRYLFL 717
Cdd:COG1330 607 RD A LAARLD GRPTR QRFLAG GVT FCTLMPMRSIPF R VVCLLGMNDG DF PR QQ PP L GFDLMA RHP RRGDRSRRDDDRYLFL 686
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 718 EALLSA QQQ LYISY I GRSI Q DNS K R Y PSVLVSEL IE Y V AQ SYH LPG deklsad DS AQ R VTQ HL LCW H ARM PFS AEN F IKN 797
Cdd:COG1330 687 EALLSA RER LYISY V GRSI R DNS E R P PSVLVSEL LD Y L AQ GFA LPG ------- DS GE R LRA HL VVR H PLQ PFS PRY F EPG 759
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 798 S - E L Q SY A AEWL PS A ESK G HAHPN ---- FN QPL Q - A EP LA E I TLD E L V RF Y RHPVRAF FQL RLGV NFVI EE T EL P D E EPF 871
Cdd:COG1330 760 S p R L F SY D AEWL AA A RAL G QPRAP appf LA QPL P p P EP EE E V TLD D L L RF L RHPVRAF LRQ RLGV RLPE EE E EL E D A EPF 839
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 872 T LD N L S RYQ FNTQ LL N AL INE DD INSV FAR A RA A G V LP Y G S FGEL YW E SQQD E MVP LA EQI R SERKEN -- H S IELNIEFA 949
Cdd:COG1330 840 E LD G L E RYQ LRQR LL E AL LAG DD PAEL FAR L RA R G L LP P G A FGEL LL E RLLE E VAA LA AAL R PLLAGP pl E S LDVDLDLG 919
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 950 DITV TGW IHQ V QD DGLVRWRP SI L T A V D G L L LWLEHL VY C S AG GE G - ES RIY GR K G T a WR Y AP MAAD EAR PY L QQ L IKG Y 1028
Cdd:COG1330 920 GVRL TGW LDG V RG DGLVRWRP GK L K A K D L L R LWLEHL AL C A AG PP G g ES VLV GR D G V - WR L AP LPPE EAR AL L AE L LAL Y 998
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 1029 Q QGL CE PL M L LS K SG WAW LSQ C F dresgqilw D EE TQ G KA RMKLL Q V W Q G DQR V T GEG E D H Y I QRV C R RM D NQH LD - IIL 1107
Cdd:COG1330 999 R QGL RQ PL P L FP K TA WAW AEA C Y --------- D GK TQ E KA LEAAR Q A W E G GDF V P GEG D D P Y L QRV F R GL D PLE LD e RFA 1069
1130
....*....|....*.
gi 488140419 1108 HET ER Y LLP IAR H NK A 1123
Cdd:COG1330 1070 ALA ER L LLP LLA H LE A 1085
recC
TIGR01450 exodeoxyribonuclease V, gamma subunit; This model describes the gamma subunit of ...
2-1088
0e+00
exodeoxyribonuclease V, gamma subunit; This model describes the gamma subunit of exodeoxyribonuclease V. Species containing this protein should also have the alpha (TIGR01447) and beta (TIGR00609) subunits. Candidates from Borrelia and from the Chlamydias differ dramatically and score between trusted and noise cutoffs. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273633 [Multi-domain]
Cd Length: 1060
Bit Score: 1228.83
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 2 F TV YHSN Q LD L L K AL TT AL IERE PLD N PF QQ E VV LVQSPGMAQWLQM Q LA QQFSI AAN IV FPLPA T FIW D MF TR VLP D IP 81
Cdd:TIGR01450 1 F RL YHSN R LD V L A AL LA AL LRDP PLD D PF EP E LI LVQSPGMAQWLQM T LA EDLGV AAN LE FPLPA S FIW Q MF VA VLP E IP 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 82 K ESAF S KE A M T W K LM W LLP D LLE N P L F SPMKR YL S DD G D R RK IH QLA A R V ADLFDQYLVYRP E WL ES WE R G QLI EG LD D A 161
Cdd:TIGR01450 81 E ESAF N KE V M S W R LM A LLP A LLE R P E F RTLRH YL A DD S D L RK RY QLA E R L ADLFDQYLVYRP D WL AA WE A G DDV EG PG D L 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 162 Q Q WQA L LW VE L TRYTRQLE QP E w HRANL Y QRFI HQ L LKSDVC P Q GLP K R V FI C GISALPP I YLQAL Q AL GK H I D I HL MF T 241
Cdd:TIGR01450 161 Q A WQA I LW RA L VAGVGADG QP T - HRANL H QRFI ER L RSGTTH P P GLP A R L FI F GISALPP T YLQAL A AL AQ H C D V HL FL T 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 242 NPCR YF WGDI Q D YTF LA K L QS R K R RHYRESI elslfrhpqqaeq L FNTDG E QNLSN PLLASWG R LGRD HM YLL SQIDEI Q 321
Cdd:TIGR01450 240 NPCR EY WGDI I D FKY LA R L LT R H R GADPLLP ------------- L RQDLE E HAAGH PLLASWG K LGRD FI YLL PELEQS Q 306
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 322 E VH AF VDIE PD N LLH GI Q H D M L E LE DHA V igttpetlars D Q K RRLDLD DRS LS FH V CHSP Q REVEVL Q D H LL G LL AA DP 401
Cdd:TIGR01450 307 E ID AF LEAT PD T LLH QL Q A D I L H LE PRP V ----------- D A K LPSAPL DRS IQ FH A CHSP L REVEVL H D R LL A LL EE DP 375
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 402 E L T PRDIIVMV V DIDSY T PYI Q A A FG N AP - SE R Y LP FAI SDR KAS Q AH P A L H AFI T LLDLP Q SRFTA EQV LALL EV P ALA 480
Cdd:TIGR01450 376 T L Q PRDIIVMV P DIDSY A PYI E A V FG Q AP v DA R F LP YSL SDR RLR Q RE P L L E AFI H LLDLP E SRFTA SEI LALL DI P PVR 455
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 481 TK FGI T ED G L RR LR Q WV G E S GIRWGLD DDNV REL S LPAT G QH - TWRFGL T RMLLGYAM DST AG D WQG I LPYD ESS GL A AE 559
Cdd:TIGR01450 456 AR FGI D ED D L ET LR R WV A E A GIRWGLD AEHR REL G LPAT D QH n TWRFGL E RMLLGYAM GED AG I WQG V LPYD DVG GL Q AE 535
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 560 LAG Q LA DM L MH LS Q WR QQ L G QPR E L SE WL PIC R Q LLD TF F DQ D ND TE A AL VLI E QQ W QKVIGYGIA AQ YPDVV PL NLL RD 639
Cdd:TIGR01450 536 LAG R LA EF L ER LS H WR RG L A QPR P L EQ WL ERL R D LLD AL F AV D DT TE L AL TQL E RE W VDWQAEAAG AQ FAQPL PL EVV RD 615
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 640 E LAA R LD N E RI S Q RFLAG PI NFCTL M PMRSIPF K VVCLLGMNDG V YPR TLP P Q GFDLMA KKV R R GDRSRRDDDRYLFLEA 719
Cdd:TIGR01450 616 H LAA L LD D E PT S A RFLAG GV NFCTL V PMRSIPF R VVCLLGMNDG D YPR QQH P A GFDLMA REP R K GDRSRRDDDRYLFLEA 695
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 720 LLSAQ Q QLYISY I GRSI Q DNS K R Y PSVL VS ELI E Y VA Q SYH L P GD E klsaddsa Q R VTQH L LCW H ARM PFS AE NF I -- KN 797
Cdd:TIGR01450 696 LLSAQ E QLYISY V GRSI R DNS E R P PSVL LG ELI D Y LV Q THY L D GD S -------- A R LAAR L TEQ H PLQ PFS PQ NF Q pg GR 767
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 798 SELQ SYA A EWL PS A ESKGHAH P N F N QPL --- Q AEP L AE IT L DE L V RF YR HPV R AFFQ L RLGV N F VI E ETELP D E EPF T LD 874
Cdd:TIGR01450 768 LKPF SYA R EWL AA A QAAEGKR P D F D QPL pgr P AEP P AE LP L AD L I RF WA HPV K AFFQ Q RLGV S F PW E VETIE D S EPF E LD 847
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 875 N LSRYQ F N T QLL NALINE D --- D INSVF AR A RA A G V LP Y G S FG ELYWES QQ DEMVP LA EQIRSE RK --- ENHS I E L NIE f 948
Cdd:TIGR01450 848 G LSRYQ I N E QLL RFALQD D eer D LAQLA AR L RA R G L LP S G A FG RIFAKE QQ QRARQ LA TAVLAH RK qpp QSVE I D L DLQ - 926
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 949 AD I TVT GW IH Q VQD DGLVRWR PSI L TAVDG L LL WLEHL VY C SA G GEG ES RIYG RK GTAWRY A --- PMA A DE A RP YL QQ L I 1025
Cdd:TIGR01450 927 DG I RLS GW LG Q LYP DGLVRWR YGK L NSPQL L RA WLEHL IL C AS G PPV ES VLFC RK VGRLHI A lpp LVP A EQ A LA YL SE L V 1006
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488140419 1026 KG Y Q QG LCE PL MLLS K SGW AW LSQCF D RE sgqilw DE etqg KA RM K LLQVWQ G DQRVT GEG ED 1088
Cdd:TIGR01450 1007 EL Y R QG MRQ PL PFPP K TAL AW AEARY D AQ ------ DE ---- KA LK K AREAYE G NFFRK GEG DA 1059
RecC_C-like
cd22353 C-terminal nuclease-like domain of exodeoxyribonuclease V subunit RecC and similar proteins; ...
834-1117
2.02e-146
C-terminal nuclease-like domain of exodeoxyribonuclease V subunit RecC and similar proteins; Exodeoxyribonuclease V subunit beta (RecC) is part of the RecBCD complex that processes DNA ends resulting from a double-strand break. Its C-terminal domain contacts the two separate strands of the DNA substrate and may be responsible for stabilizing RecD interactions with the complex. It belongs to a superfamily of PDDEXK nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Pssm-ID: 411757 [Multi-domain]
Cd Length: 283
Bit Score: 440.05
E-value: 2.02e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 834 T LDEL V RF Y RHPVR A FFQ L RL G V N F VI EETELPDEEPF T LD N L S RYQ F N T QLLNALI NED DI NSVFA R A RA A G V LPYG S F 913
Cdd:cd22353 1 E LDEL L RF W RHPVR Y FFQ R RL K V F F EQ EETELPDEEPF S LD G L E RYQ L N Q QLLNALI EGK DI DQLYQ R Y RA S G K LPYG A F 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 914 GELYWE S Q QD EM VP LAE Q IR SE R K E NHSI E L N IEFAD I TV TGW IH QVQ D DGL V RWRP SI L T A V DGL L LWLEHL V YC SA GG 993
Cdd:cd22353 81 GELYWE K Q LK EM QE LAE K IR PL R T E LKDL E I N LKING I RL TGW LK QVQ Q DGL L RWRP GK L N A K DGL S LWLEHL I YC AL GG 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 994 E GESR IY GR KGTA WR YA P MA AD E A RP YL QQ LI K GY Q QG LCE PL M LL S KSG W AWL SQ C F D RES g QI L WDE E TQ G KAR M KLL 1073
Cdd:cd22353 161 K GESR LI GR NNSI WR FP P LS AD Q A KK YL EK LI E GY L QG MNQ PL L LL P KSG G AWL EA C Y D KKN - QI K WDE N TQ E KAR K KLL 239
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 488140419 1074 Q V W Q G DQRVT GEG E D H YIQR VCRRMDNQHLDI I LHET ER Y LLP I 1117
Cdd:cd22353 240 Q A W N G NYYIS GEG D D P YIQR LIPQLNEELIEQ I IKLA ER W LLP L 283
Exonuc_V_gamma
pfam04257 Exodeoxyribonuclease V, gamma subunit; The Exodeoxyribonuclease V enzyme is a multi-subunit ...
2-342
8.69e-123
Exodeoxyribonuclease V, gamma subunit; The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This subunit recognizes and binds DNA forks containing Chi sequences in a sequence specific manner while Chi interactions with the phosphodiester backbone (mainly arginine side chains) stabilize the twisted conformation of the DNA. These interactions induce conformational changes that switch RecBCD from bacteriophage destruction and CRISPR spacer acquisition, to constructive host DNA repair.
Pssm-ID: 461240 [Multi-domain]
Cd Length: 308
Bit Score: 379.35
E-value: 8.69e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 2 F T V Y H SN Q L DL L KA L TT AL I e R E PL DN PF QQ E VV LVQS P GMA Q WL QMQ LA QQ F S IAANI V FP L PA T F I W DM F TR VL PDI P 81
Cdd:pfam04257 1 L T I Y Q SN R L EV L AE L LA AL L - R R PL AD PF EP E II LVQS K GMA R WL TLE LA EK F G IAANI E FP F PA S F L W KL F RA VL GKL P 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 82 K ES A F S KE AM TW K LM W LLP D LLE N P L F S P MKR YL S DDGD RR K IH QLA A R V ADLFDQYL V YRP E WL ES WE R G QLI E G L DDA 161
Cdd:pfam04257 80 E ES P F A KE VL TW R LM R LLP E LLE Q P E F A P LRH YL A DDGD QL K LF QLA E R I ADLFDQYL L YRP D WL AA WE A G KSP E A L PAD 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 162 QQ WQA L LW VE L TRYTRQL eqpew HRA N LY QR F IHQ L L K S - D VC P QG LPKR V F IC GIS A LPP I YL QA LQAL GK HID I HL MF 240
Cdd:pfam04257 160 EA WQA I LW RA L VAEIKLR ----- HRA R LY ED F LQA L Q K E g D KA P KD LPKR L F VF GIS S LPP L YL DI LQAL AR HID V HL FL 234
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 241 T NPCR YF WGDI Q D YTF L AK L QS R K R RHYR E S ielslfrhpqqaeqlfntdgeqnl S NPLLASWG RL GRD HMY LL SQID E I 320
Cdd:pfam04257 235 L NPCR EY WGDI V D RRE L LR L AE R E R QRRG E E ------------------------ G NPLLASWG KQ GRD FFD LL EELE E D 290
330 340
....*....|....*....|..
gi 488140419 321 qevh A FV DI E P D N LL HGI Q H D M 342
Cdd:pfam04257 291 ---- L FV EP E G D S LL SQL Q N D I 308
Name
Accession
Description
Interval
E-value
recC
PRK11069 exodeoxyribonuclease V subunit gamma;
1-1123
0e+00
exodeoxyribonuclease V subunit gamma;
Pssm-ID: 236835 [Multi-domain]
Cd Length: 1122
Bit Score: 2259.05
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 1 MFTVYHSNQLD L LKAL TTA LIEREPLD N PF QQ E VV LVQSPGMAQWLQM Q LAQ Q F S IAANI V FPLPATFIWDMFTRVLPDI 80
Cdd:PRK11069 1 MFTVYHSNQLD V LKAL MVF LIEREPLD D PF EP E MI LVQSPGMAQWLQM E LAQ K F G IAANI D FPLPATFIWDMFTRVLPDI 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 81 PKESAF S KEAMTWKLM W LLP D LLE N P L F S P MKR YL S DD G D R RK IH QLAAR V ADLFDQYLVYRPEWL E SWE R GQL I EGL D D 160
Cdd:PRK11069 81 PKESAF N KEAMTWKLM T LLP Q LLE R P E F T P LRH YL T DD E D K RK LF QLAAR I ADLFDQYLVYRPEWL A SWE A GQL V EGL G D 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 161 AQ Q WQA L LW VE L TR YT R QL E QP E WHRANLYQRFI HQ L LKSDV CP Q GLPKRVFICGISALPP I YLQALQALGKHIDIHL M F 240
Cdd:PRK11069 161 AQ P WQA P LW KA L VE YT H QL G QP R WHRANLYQRFI ET L ESATT CP P GLPKRVFICGISALPP V YLQALQALGKHIDIHL L F 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 241 TNPCRY F WGDIQD YT FLAKL QS R K RRH YR E SI EL S LFR HPQQ AEQLFN T DGEQ NLS NPLLASWG R LGRD HM YLLSQ IDEI 320
Cdd:PRK11069 241 TNPCRY Y WGDIQD PA FLAKL LA R Q RRH SF E DR EL P LFR DSEN AEQLFN S DGEQ DVG NPLLASWG K LGRD NL YLLSQ LESS 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 321 QE VH AFVDIEPDNLLH G IQ H D M LELEDHAVIG TTP E TLA RSD Q KR R LD L DDRSLSFHVCHSPQREVEVL Q D H LL GL L A AD 400
Cdd:PRK11069 321 QE LD AFVDIEPDNLLH N IQ A D I LELEDHAVIG VND E EFS RSD H KR P LD P DDRSLSFHVCHSPQREVEVL H D R LL AM L E AD 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 401 P E LTPRDIIVMV V DIDSY T P Y IQA A FGNAP S ERYLPFAISDR K A S QAHP A L H AFI T LL D LP Q SRFTAE Q VLALLEVPALA 480
Cdd:PRK11069 401 P T LTPRDIIVMV A DIDSY S P F IQA V FGNAP A ERYLPFAISDR R A R QAHP V L Q AFI S LL S LP D SRFTAE D VLALLEVPALA 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 481 TK F G ITE D GLR R LRQWV G ESGIRWGLDDDNVREL S LPATGQHTWRFGLTRMLLGYAM D S T AG D WQG I LPYDESSGL A AEL 560
Cdd:PRK11069 481 AR F A ITE E GLR Y LRQWV E ESGIRWGLDDDNVREL E LPATGQHTWRFGLTRMLLGYAM E S A AG E WQG V LPYDESSGL I AEL 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 561 AG Q LA DM LM H L SQ WR QQ L G QPR E L S EWLP I CRQLLD T FF DQ D ND TEAAL V LIEQQWQ KV I GY G IA AQY P D V VPL N LLRDE 640
Cdd:PRK11069 561 AG H LA SL LM Q L NI WR RG L A QPR P L E EWLP V CRQLLD D FF LP D AE TEAAL A LIEQQWQ AI I EE G LD AQY G D A VPL S LLRDE 640
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 641 LA A RLD N ERISQRFLAGP I NFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPP Q GFDLM AK K VR RGDRSRRDDDRYLFLEAL 720
Cdd:PRK11069 641 LA Q RLD Q ERISQRFLAGP V NFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPP L GFDLM SQ K PK RGDRSRRDDDRYLFLEAL 720
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 721 LSAQQQLYISYIGRSIQDNS K R Y PSVLVSEL I EY VA QSY H LPGDE K L SA D D SA Q RV TQ HL L C W H A RMPF SAE NF IKN s E L 800
Cdd:PRK11069 721 LSAQQQLYISYIGRSIQDNS E R F PSVLVSEL L EY IG QSY C LPGDE A L NC D E SA A RV KA HL T C L H T RMPF DPQ NF QPG - E Q 799
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 801 QSYA A EWLP S A ESK G H AHP N F N QPL QA EP LA E I TLDEL V RF Y RHPVRAFFQ L RL G VNF VI EE T ELPDEEPFTLD N LSRYQ 880
Cdd:PRK11069 800 QSYA R EWLP A A SQQ G K AHP D F V QPL PF EP PE E L TLDEL Q RF W RHPVRAFFQ R RL K VNF RT EE S ELPDEEPFTLD G LSRYQ 879
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 881 F N T QLLNALI NE DD INSV F A R A RAAG V LPYG S FGE LY WE S Q QD EM VP LA EQI R SE R KENH S I E LNIEFADITV TGW IH QV 960
Cdd:PRK11069 880 L N Q QLLNALI EQ DD AERL F R R Q RAAG K LPYG A FGE IF WE T Q CQ EM QQ LA DRV R AC R QPGQ S L E IDLTLNGVQL TGW LP QV 959
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 961 Q D DGL V RWRP SI L TAV DGL L LWLEHLVYC SA GG E GESR IY GRK GTA WR YA P M AA DE A RP YL Q QLI K GY QQ G LCE PL M LL S 1040
Cdd:PRK11069 960 Q P DGL L RWRP GL L SVA DGL Q LWLEHLVYC AS GG N GESR LF GRK EGE WR FP P L AA EQ A KQ YL S QLI E GY RE G MSA PL L LL P 1039
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 1041 KSG W AWL SQ C F DRE SGQ IL W DEETQ G KAR M KLLQ V W Q G DQR V T GEG E D H YIQR VC R RM D NQH L DI I LHETE RYLLP IA R H 1120
Cdd:PRK11069 1040 KSG G AWL KA C Y DRE NDA IL D DEETQ Q KAR K KLLQ A W E G NMM V R GEG D D I YIQR LW R QL D DET L EA I IEQAQ RYLLP LF R F 1119
...
gi 488140419 1121 N KA 1123
Cdd:PRK11069 1120 N QS 1122
RecC
COG1330 Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V) [Replication, ...
1-1123
0e+00
Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440941 [Multi-domain]
Cd Length: 1087
Bit Score: 1590.25
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 1 M FTV YHSN Q L DL L KA L TT AL IERE PL DN PF QQ EV V LVQSPGMA Q WLQ MQ LA QQ F S IAANI V FPLPA T FIW DM F TR VLPD I 80
Cdd:COG1330 1 M LHL YHSN R L EV L AD L LA AL LAAQ PL AD PF AP EV I LVQSPGMA R WLQ LE LA ER F G IAANI E FPLPA S FIW QL F RA VLPD V 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 81 P K ES A FSKEA M TW K LM W LLP D LL EN P L F S P MK RYL S DD G D R RK IH QLA A R V ADLFDQYLVYRP E WL ES WE R G QLIE - G L D 159
Cdd:COG1330 81 P E ES P FSKEA L TW R LM R LLP E LL DE P E F A P LA RYL G DD E D Q RK RY QLA G R L ADLFDQYLVYRP D WL AA WE A G EDVD g P L P 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 160 D A Q Q WQA L LW VE L TRY T RQ L e Q PE WHRANLYQRFI HQ L LKSDVC P Q GLP K RVF IC GISALPP I YL QA LQAL GK HID I HL M 239
Cdd:COG1330 161 D D Q A WQA A LW RA L VAE T GA L - Q SA WHRANLYQRFI AA L RSGEPR P A GLP E RVF VF GISALPP V YL EV LQAL AR HID V HL F 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 240 FT NPCR YF WGDI Q D YTF LA K L QS R K rrhyresielslfrhpqqaeqlf NT D GEQNLS NPLLASWG RL GRD HMY LL SQIDE 319
Cdd:COG1330 240 LL NPCR EY WGDI V D ARE LA R L AA R S ----------------------- DD D DLLEVG NPLLASWG KQ GRD FLD LL AELED 296
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 320 - I QE VH AFVD IE PD N LLH GI Q H D M LEL EDH A VIG ttpetlarsd Q KR R L DL DDRSL SF H V CHSP Q REVEVL Q D H LL G L L A 398
Cdd:COG1330 297 e S QE ID AFVD PP PD T LLH QL Q A D I LEL RPP A EGA ---------- S KR P L AP DDRSL QV H A CHSP L REVEVL H D Q LL A L F A 366
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 399 A DP E LTPRDI I VMV V DI DS Y T PYIQA A FG N AP S - E R YL PF A I S DR K A S Q AH P A L H AF IT LLDLPQSRFTA EQ VL A LLEVP 477
Cdd:COG1330 367 D DP T LTPRDI L VMV P DI EA Y A PYIQA V FG Q AP P d P R RI PF S I A DR S A R Q EN P L L A AF LQ LLDLPQSRFTA SE VL D LLEVP 446
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 478 A L A TK FG IT ED G L R RLR Q WV G E S GIRWGLD DDNVRE L S LPAT G Q H TWRFGL T R M LLGYAM DST AG D WQGILPYDE SS GL A 557
Cdd:COG1330 447 A V A RR FG LD ED D L E RLR R WV A E A GIRWGLD AAHRAR L G LPAT E Q N TWRFGL D R L LLGYAM GEE AG L WQGILPYDE VE GL D 526
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 558 AEL A G Q LA DM L MH L SQ WRQ Q L GQ PR E L S EWL PIC R Q LLD T FF DQ D NDT E A AL VLIEQQWQKVIGYGIA A Q Y PDVV PL NLL 637
Cdd:COG1330 527 AEL L G R LA EF L DR L AA WRQ R L AE PR T L A EWL ERL R A LLD D FF AP D EED E W AL AQLRRALAELAEQAAE A G Y DEPL PL AVV 606
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 638 RD E LAARLD NERIS QRFLAG PIN FCTLMPMRSIPF K VVCLLGMNDG VY PR TL PP Q GFDLMA KKV RRGDRSRRDDDRYLFL 717
Cdd:COG1330 607 RD A LAARLD GRPTR QRFLAG GVT FCTLMPMRSIPF R VVCLLGMNDG DF PR QQ PP L GFDLMA RHP RRGDRSRRDDDRYLFL 686
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 718 EALLSA QQQ LYISY I GRSI Q DNS K R Y PSVLVSEL IE Y V AQ SYH LPG deklsad DS AQ R VTQ HL LCW H ARM PFS AEN F IKN 797
Cdd:COG1330 687 EALLSA RER LYISY V GRSI R DNS E R P PSVLVSEL LD Y L AQ GFA LPG ------- DS GE R LRA HL VVR H PLQ PFS PRY F EPG 759
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 798 S - E L Q SY A AEWL PS A ESK G HAHPN ---- FN QPL Q - A EP LA E I TLD E L V RF Y RHPVRAF FQL RLGV NFVI EE T EL P D E EPF 871
Cdd:COG1330 760 S p R L F SY D AEWL AA A RAL G QPRAP appf LA QPL P p P EP EE E V TLD D L L RF L RHPVRAF LRQ RLGV RLPE EE E EL E D A EPF 839
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 872 T LD N L S RYQ FNTQ LL N AL INE DD INSV FAR A RA A G V LP Y G S FGEL YW E SQQD E MVP LA EQI R SERKEN -- H S IELNIEFA 949
Cdd:COG1330 840 E LD G L E RYQ LRQR LL E AL LAG DD PAEL FAR L RA R G L LP P G A FGEL LL E RLLE E VAA LA AAL R PLLAGP pl E S LDVDLDLG 919
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 950 DITV TGW IHQ V QD DGLVRWRP SI L T A V D G L L LWLEHL VY C S AG GE G - ES RIY GR K G T a WR Y AP MAAD EAR PY L QQ L IKG Y 1028
Cdd:COG1330 920 GVRL TGW LDG V RG DGLVRWRP GK L K A K D L L R LWLEHL AL C A AG PP G g ES VLV GR D G V - WR L AP LPPE EAR AL L AE L LAL Y 998
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 1029 Q QGL CE PL M L LS K SG WAW LSQ C F dresgqilw D EE TQ G KA RMKLL Q V W Q G DQR V T GEG E D H Y I QRV C R RM D NQH LD - IIL 1107
Cdd:COG1330 999 R QGL RQ PL P L FP K TA WAW AEA C Y --------- D GK TQ E KA LEAAR Q A W E G GDF V P GEG D D P Y L QRV F R GL D PLE LD e RFA 1069
1130
....*....|....*.
gi 488140419 1108 HET ER Y LLP IAR H NK A 1123
Cdd:COG1330 1070 ALA ER L LLP LLA H LE A 1085
recC
TIGR01450 exodeoxyribonuclease V, gamma subunit; This model describes the gamma subunit of ...
2-1088
0e+00
exodeoxyribonuclease V, gamma subunit; This model describes the gamma subunit of exodeoxyribonuclease V. Species containing this protein should also have the alpha (TIGR01447) and beta (TIGR00609) subunits. Candidates from Borrelia and from the Chlamydias differ dramatically and score between trusted and noise cutoffs. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273633 [Multi-domain]
Cd Length: 1060
Bit Score: 1228.83
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 2 F TV YHSN Q LD L L K AL TT AL IERE PLD N PF QQ E VV LVQSPGMAQWLQM Q LA QQFSI AAN IV FPLPA T FIW D MF TR VLP D IP 81
Cdd:TIGR01450 1 F RL YHSN R LD V L A AL LA AL LRDP PLD D PF EP E LI LVQSPGMAQWLQM T LA EDLGV AAN LE FPLPA S FIW Q MF VA VLP E IP 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 82 K ESAF S KE A M T W K LM W LLP D LLE N P L F SPMKR YL S DD G D R RK IH QLA A R V ADLFDQYLVYRP E WL ES WE R G QLI EG LD D A 161
Cdd:TIGR01450 81 E ESAF N KE V M S W R LM A LLP A LLE R P E F RTLRH YL A DD S D L RK RY QLA E R L ADLFDQYLVYRP D WL AA WE A G DDV EG PG D L 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 162 Q Q WQA L LW VE L TRYTRQLE QP E w HRANL Y QRFI HQ L LKSDVC P Q GLP K R V FI C GISALPP I YLQAL Q AL GK H I D I HL MF T 241
Cdd:TIGR01450 161 Q A WQA I LW RA L VAGVGADG QP T - HRANL H QRFI ER L RSGTTH P P GLP A R L FI F GISALPP T YLQAL A AL AQ H C D V HL FL T 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 242 NPCR YF WGDI Q D YTF LA K L QS R K R RHYRESI elslfrhpqqaeq L FNTDG E QNLSN PLLASWG R LGRD HM YLL SQIDEI Q 321
Cdd:TIGR01450 240 NPCR EY WGDI I D FKY LA R L LT R H R GADPLLP ------------- L RQDLE E HAAGH PLLASWG K LGRD FI YLL PELEQS Q 306
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 322 E VH AF VDIE PD N LLH GI Q H D M L E LE DHA V igttpetlars D Q K RRLDLD DRS LS FH V CHSP Q REVEVL Q D H LL G LL AA DP 401
Cdd:TIGR01450 307 E ID AF LEAT PD T LLH QL Q A D I L H LE PRP V ----------- D A K LPSAPL DRS IQ FH A CHSP L REVEVL H D R LL A LL EE DP 375
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 402 E L T PRDIIVMV V DIDSY T PYI Q A A FG N AP - SE R Y LP FAI SDR KAS Q AH P A L H AFI T LLDLP Q SRFTA EQV LALL EV P ALA 480
Cdd:TIGR01450 376 T L Q PRDIIVMV P DIDSY A PYI E A V FG Q AP v DA R F LP YSL SDR RLR Q RE P L L E AFI H LLDLP E SRFTA SEI LALL DI P PVR 455
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 481 TK FGI T ED G L RR LR Q WV G E S GIRWGLD DDNV REL S LPAT G QH - TWRFGL T RMLLGYAM DST AG D WQG I LPYD ESS GL A AE 559
Cdd:TIGR01450 456 AR FGI D ED D L ET LR R WV A E A GIRWGLD AEHR REL G LPAT D QH n TWRFGL E RMLLGYAM GED AG I WQG V LPYD DVG GL Q AE 535
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 560 LAG Q LA DM L MH LS Q WR QQ L G QPR E L SE WL PIC R Q LLD TF F DQ D ND TE A AL VLI E QQ W QKVIGYGIA AQ YPDVV PL NLL RD 639
Cdd:TIGR01450 536 LAG R LA EF L ER LS H WR RG L A QPR P L EQ WL ERL R D LLD AL F AV D DT TE L AL TQL E RE W VDWQAEAAG AQ FAQPL PL EVV RD 615
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 640 E LAA R LD N E RI S Q RFLAG PI NFCTL M PMRSIPF K VVCLLGMNDG V YPR TLP P Q GFDLMA KKV R R GDRSRRDDDRYLFLEA 719
Cdd:TIGR01450 616 H LAA L LD D E PT S A RFLAG GV NFCTL V PMRSIPF R VVCLLGMNDG D YPR QQH P A GFDLMA REP R K GDRSRRDDDRYLFLEA 695
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 720 LLSAQ Q QLYISY I GRSI Q DNS K R Y PSVL VS ELI E Y VA Q SYH L P GD E klsaddsa Q R VTQH L LCW H ARM PFS AE NF I -- KN 797
Cdd:TIGR01450 696 LLSAQ E QLYISY V GRSI R DNS E R P PSVL LG ELI D Y LV Q THY L D GD S -------- A R LAAR L TEQ H PLQ PFS PQ NF Q pg GR 767
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 798 SELQ SYA A EWL PS A ESKGHAH P N F N QPL --- Q AEP L AE IT L DE L V RF YR HPV R AFFQ L RLGV N F VI E ETELP D E EPF T LD 874
Cdd:TIGR01450 768 LKPF SYA R EWL AA A QAAEGKR P D F D QPL pgr P AEP P AE LP L AD L I RF WA HPV K AFFQ Q RLGV S F PW E VETIE D S EPF E LD 847
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 875 N LSRYQ F N T QLL NALINE D --- D INSVF AR A RA A G V LP Y G S FG ELYWES QQ DEMVP LA EQIRSE RK --- ENHS I E L NIE f 948
Cdd:TIGR01450 848 G LSRYQ I N E QLL RFALQD D eer D LAQLA AR L RA R G L LP S G A FG RIFAKE QQ QRARQ LA TAVLAH RK qpp QSVE I D L DLQ - 926
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 949 AD I TVT GW IH Q VQD DGLVRWR PSI L TAVDG L LL WLEHL VY C SA G GEG ES RIYG RK GTAWRY A --- PMA A DE A RP YL QQ L I 1025
Cdd:TIGR01450 927 DG I RLS GW LG Q LYP DGLVRWR YGK L NSPQL L RA WLEHL IL C AS G PPV ES VLFC RK VGRLHI A lpp LVP A EQ A LA YL SE L V 1006
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488140419 1026 KG Y Q QG LCE PL MLLS K SGW AW LSQCF D RE sgqilw DE etqg KA RM K LLQVWQ G DQRVT GEG ED 1088
Cdd:TIGR01450 1007 EL Y R QG MRQ PL PFPP K TAL AW AEARY D AQ ------ DE ---- KA LK K AREAYE G NFFRK GEG DA 1059
RecC_C-like
cd22353 C-terminal nuclease-like domain of exodeoxyribonuclease V subunit RecC and similar proteins; ...
834-1117
2.02e-146
C-terminal nuclease-like domain of exodeoxyribonuclease V subunit RecC and similar proteins; Exodeoxyribonuclease V subunit beta (RecC) is part of the RecBCD complex that processes DNA ends resulting from a double-strand break. Its C-terminal domain contacts the two separate strands of the DNA substrate and may be responsible for stabilizing RecD interactions with the complex. It belongs to a superfamily of PDDEXK nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Pssm-ID: 411757 [Multi-domain]
Cd Length: 283
Bit Score: 440.05
E-value: 2.02e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 834 T LDEL V RF Y RHPVR A FFQ L RL G V N F VI EETELPDEEPF T LD N L S RYQ F N T QLLNALI NED DI NSVFA R A RA A G V LPYG S F 913
Cdd:cd22353 1 E LDEL L RF W RHPVR Y FFQ R RL K V F F EQ EETELPDEEPF S LD G L E RYQ L N Q QLLNALI EGK DI DQLYQ R Y RA S G K LPYG A F 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 914 GELYWE S Q QD EM VP LAE Q IR SE R K E NHSI E L N IEFAD I TV TGW IH QVQ D DGL V RWRP SI L T A V DGL L LWLEHL V YC SA GG 993
Cdd:cd22353 81 GELYWE K Q LK EM QE LAE K IR PL R T E LKDL E I N LKING I RL TGW LK QVQ Q DGL L RWRP GK L N A K DGL S LWLEHL I YC AL GG 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 994 E GESR IY GR KGTA WR YA P MA AD E A RP YL QQ LI K GY Q QG LCE PL M LL S KSG W AWL SQ C F D RES g QI L WDE E TQ G KAR M KLL 1073
Cdd:cd22353 161 K GESR LI GR NNSI WR FP P LS AD Q A KK YL EK LI E GY L QG MNQ PL L LL P KSG G AWL EA C Y D KKN - QI K WDE N TQ E KAR K KLL 239
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 488140419 1074 Q V W Q G DQRVT GEG E D H YIQR VCRRMDNQHLDI I LHET ER Y LLP I 1117
Cdd:cd22353 240 Q A W N G NYYIS GEG D D P YIQR LIPQLNEELIEQ I IKLA ER W LLP L 283
Exonuc_V_gamma
pfam04257 Exodeoxyribonuclease V, gamma subunit; The Exodeoxyribonuclease V enzyme is a multi-subunit ...
2-342
8.69e-123
Exodeoxyribonuclease V, gamma subunit; The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This subunit recognizes and binds DNA forks containing Chi sequences in a sequence specific manner while Chi interactions with the phosphodiester backbone (mainly arginine side chains) stabilize the twisted conformation of the DNA. These interactions induce conformational changes that switch RecBCD from bacteriophage destruction and CRISPR spacer acquisition, to constructive host DNA repair.
Pssm-ID: 461240 [Multi-domain]
Cd Length: 308
Bit Score: 379.35
E-value: 8.69e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 2 F T V Y H SN Q L DL L KA L TT AL I e R E PL DN PF QQ E VV LVQS P GMA Q WL QMQ LA QQ F S IAANI V FP L PA T F I W DM F TR VL PDI P 81
Cdd:pfam04257 1 L T I Y Q SN R L EV L AE L LA AL L - R R PL AD PF EP E II LVQS K GMA R WL TLE LA EK F G IAANI E FP F PA S F L W KL F RA VL GKL P 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 82 K ES A F S KE AM TW K LM W LLP D LLE N P L F S P MKR YL S DDGD RR K IH QLA A R V ADLFDQYL V YRP E WL ES WE R G QLI E G L DDA 161
Cdd:pfam04257 80 E ES P F A KE VL TW R LM R LLP E LLE Q P E F A P LRH YL A DDGD QL K LF QLA E R I ADLFDQYL L YRP D WL AA WE A G KSP E A L PAD 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 162 QQ WQA L LW VE L TRYTRQL eqpew HRA N LY QR F IHQ L L K S - D VC P QG LPKR V F IC GIS A LPP I YL QA LQAL GK HID I HL MF 240
Cdd:pfam04257 160 EA WQA I LW RA L VAEIKLR ----- HRA R LY ED F LQA L Q K E g D KA P KD LPKR L F VF GIS S LPP L YL DI LQAL AR HID V HL FL 234
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 241 T NPCR YF WGDI Q D YTF L AK L QS R K R RHYR E S ielslfrhpqqaeqlfntdgeqnl S NPLLASWG RL GRD HMY LL SQID E I 320
Cdd:pfam04257 235 L NPCR EY WGDI V D RRE L LR L AE R E R QRRG E E ------------------------ G NPLLASWG KQ GRD FFD LL EELE E D 290
330 340
....*....|....*....|..
gi 488140419 321 qevh A FV DI E P D N LL HGI Q H D M 342
Cdd:pfam04257 291 ---- L FV EP E G D S LL SQL Q N D I 308
RecC_C
pfam17946 RecC C-terminal domain; This entry corresponds to the C-terminal domain of the RecC protein. ...
831-1051
2.16e-72
RecC C-terminal domain; This entry corresponds to the C-terminal domain of the RecC protein. This domain has a PD(D/E)XK like fold. Deleting this domain eliminates RecD assembly within the RecBCD complex.
Pssm-ID: 436165 [Multi-domain]
Cd Length: 223
Bit Score: 239.87
E-value: 2.16e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 831 AE I TLD E L V RF Y R H P V RAF FQL RLGV NFVI EE TE L P D E EPF T LD N L S R Y Q FNTQ LL N AL INED D INSVF AR A RA A G V LP Y 910
Cdd:pfam17946 2 AE V TLD D L I RF L R N P A RAF LRQ RLGV RLPE EE EA L E D A EPF A LD G L E R W Q LGDR LL E AL LAGA D LEALL AR L RA R G L LP P 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 911 G S FGEL YW E SQQD E MVP LAE QI R SERKEN -- HSIELNIEFADITV TGW IHQVQDD GL V RWR P S I L T A V D G L LL WLEHL VY 988
Cdd:pfam17946 82 G A FGEL LL E ELLA E VQA LAE RL R ALLGGG pl RPLDVDLDLGGGRL TGW LGGLRRR GL L RWR Y S R L K A K D L L RA WLEHL AL 161
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488140419 989 C S AG G EG ESRI y GR K G TAW R Y AP MA AD E AR PY L Q QL IKG Y Q QGL CE PL MLLS K SG WA WLSQCF 1051
Cdd:pfam17946 162 C A AG P EG TTLL - GR D G SDL R L AP LP AD D AR EL L A QL LAL Y R QGL RR PL PFFP K TA WA YAEALA 223
AddB
COG3857 ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
358-753
5.26e-22
ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
Pssm-ID: 443066 [Multi-domain]
Cd Length: 1019
Bit Score: 102.90
E-value: 5.26e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 358 L A R SDQKRRLDLDDRSLSFHVCHSPQR EVE VLQDHLLG L LAAD p ELTP RDI I V M V V D IDS Y T P Y I QAA F gnaps ER Y - L P 436
Cdd:COG3857 260 L E R NLFAYPPEEEPEGIEIIEAANRRA EVE AVAREIRR L VREE - GYRY RDI A V V V R D LEA Y A P L I ERV F ----- AE Y g I P 333
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 437 FA I SDRKASQA HP ALHAFIT LL D L PQ S R F TA E Q V LA LL EVPA L atk FGITEDGLR RL RQW V GES GIR WGLDDDNVR E LSL 516
Cdd:COG3857 334 YF I DEKRPLSH HP LVELILS LL E L VR S N F RY E D V FR LL KTGL L --- RPLSREEID RL ENY V LAY GIR GRRWLERYL E EEE 410
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 517 PA T GQHTWRFGLTRM L LGYAMD stagdwq GI LP YD E --- SSGLAA E L A GQ L ADM L mhlsqwr QQ LG Q P RE L S EW lpicrq 593
Cdd:COG3857 411 EL T DEEEEDLERLNE L RDRLLE ------- PL LP LR E rlk KAKTVR E W A EA L YEF L ------- EE LG V P EK L E EW ------ 470
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 594 lld TFFDQDN D T E A A LV l I EQ Q W QKV I GY -- GIAAQYP D - VVP L NLLRDE L AAR L DNERISQRFLA - GPINFCT L MPM R S 669
Cdd:COG3857 471 --- REAEEAG D L E E A RE - H EQ A W NAL I EL ld ELVEVLG D e KLS L EEFLRI L ESG L EELTFGLIPPS l DQVQVGG L DRA R G 546
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488140419 670 IP FK V V CL LG M N D GV Y P RTLPPQ G F ------ DLMAKK --- VRRGD R S R RDDD R Y LF LE AL LS A QQQ LY I SY IGRSIQDNS 740
Cdd:COG3857 547 LD FK A V FV LG L N E GV F P ARPRED G L lsdeer ERLNEL gle LPPTS R E R LLEE R F LF YR AL TR A SER LY L SY PLADEEGKA 626
410
....*....|...
gi 488140419 741 KR y PS V L VSE L I E 753
Cdd:COG3857 627 LL - PS P L IDR L R E 638
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
