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Conserved domains on  [gi|488138706|ref|WP_002209914|]
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hypothetical protein [Yersinia pestis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4700 super family cl27810
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
398-457 7.76e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


The actual alignment was detected with superfamily member COG4700:

Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 38.71  E-value: 7.76e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488138706 398 LQTAWLYYHEQDYAGVVATVSAVDSLPATdiVTFSQ-QILYGDALVAQQQWSQAEAHWRKL 457
Cdd:COG4700  128 LGLAQALFELGRYAEALETLEKLIAKNPD--FKSSDaHLLYARALEALGDLEAAEAELEAL 186
 
Name Accession Description Interval E-value
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
398-457 7.76e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 38.71  E-value: 7.76e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488138706 398 LQTAWLYYHEQDYAGVVATVSAVDSLPATdiVTFSQ-QILYGDALVAQQQWSQAEAHWRKL 457
Cdd:COG4700  128 LGLAQALFELGRYAEALETLEKLIAKNPD--FKSSDaHLLYARALEALGDLEAAEAELEAL 186
 
Name Accession Description Interval E-value
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
398-457 7.76e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 38.71  E-value: 7.76e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488138706 398 LQTAWLYYHEQDYAGVVATVSAVDSLPATdiVTFSQ-QILYGDALVAQQQWSQAEAHWRKL 457
Cdd:COG4700  128 LGLAQALFELGRYAEALETLEKLIAKNPD--FKSSDaHLLYARALEALGDLEAAEAELEAL 186
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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