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Conserved domains on  [gi|488138691|ref|WP_002209899|]
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MULTISPECIES: sugar ABC transporter permease [Yersinia pseudotuberculosis complex]

Protein Classification

sugar ABC transporter permease( domain architecture ID 10790449)

sugar ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of sugar substrates including oligosaccharides and maltodextrin

Gene Ontology:  GO:0043190|GO:0140359|GO:0042626|GO:0016020|GO:0008643
PubMed:  25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 1-283 5.67e-132

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


:

Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 375.26  E-value: 5.67e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691   1 MAKSQSIKQEKWIRLSLSWLVIILVSVIIIYPLIWTVGASLNAGNSLLSTSIIPENLSFQHYADLFnGEVNYMTWYWNSM 80
Cdd:COG3833    1 MSRRKSRKRRRRLKLGLRHLVLIILAIIALFPILWVVSASFNPGGSLYSSSLIPENFTLENYKKLF-TETPFLRWFLNSL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691  81 KISFLTMVLTLISVSFTAYAFSRFRFKGRQNGLMLFLLLQMIPQFSALIAIFVLSQLLGLINSHMALVLIYVAGMIPMNT 160
Cdd:COG3833   80 IVAVVTAIISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLLSALGLLNTLLGLILVYLGGAIPFNT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691 161 YLMKGYLDAIPKDLDESARMDGASNFRIFIEIIMPLSKPIVAVVALFSFTGPLGDFILSSTILRTPDKYTLPIGLYNLVA 240
Cdd:COG3833  160 WLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPENYTLAVGLYSFVS 239

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 488138691 241 QKMGASYTTYAAGAVLIAVPVAILYLALQKYFVSGLTSGSTKG 283
Cdd:COG3833  240 DQRNTNWGVFAAGAVLVAIPIVILFLFLQRYLVSGLTAGGVKG 282
 
Name Accession Description Interval E-value
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 1-283 5.67e-132

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 375.26  E-value: 5.67e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691   1 MAKSQSIKQEKWIRLSLSWLVIILVSVIIIYPLIWTVGASLNAGNSLLSTSIIPENLSFQHYADLFnGEVNYMTWYWNSM 80
Cdd:COG3833    1 MSRRKSRKRRRRLKLGLRHLVLIILAIIALFPILWVVSASFNPGGSLYSSSLIPENFTLENYKKLF-TETPFLRWFLNSL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691  81 KISFLTMVLTLISVSFTAYAFSRFRFKGRQNGLMLFLLLQMIPQFSALIAIFVLSQLLGLINSHMALVLIYVAGMIPMNT 160
Cdd:COG3833   80 IVAVVTAIISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLLSALGLLNTLLGLILVYLGGAIPFNT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691 161 YLMKGYLDAIPKDLDESARMDGASNFRIFIEIIMPLSKPIVAVVALFSFTGPLGDFILSSTILRTPDKYTLPIGLYNLVA 240
Cdd:COG3833  160 WLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPENYTLAVGLYSFVS 239

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 488138691 241 QKMGASYTTYAAGAVLIAVPVAILYLALQKYFVSGLTSGSTKG 283
Cdd:COG3833  240 DQRNTNWGVFAAGAVLVAIPIVILFLFLQRYLVSGLTAGGVKG 282
malG PRK10998
maltose ABC transporter permease MalG;
1-283 1.31e-49

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 165.65  E-value: 1.31e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691   1 MAKSQSiKQEKWiRLSLSWLVIILVSVIIIYPLIWTVGASLNAGNsLLSTSIIPENLSFQHYADLFNGEVNY-------- 72
Cdd:PRK10998   1 MAMVQP-KSQKL-RLFATHLLLLGFIALIMFPLLMVIAISLREGN-FATGSLIPEQISWEHWKLALGFSVEHadgrvtpp 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691  73 ----MTWYWNSMKISFLTMVLTLISVSFTAYAFSRFRFKGRQNGLMLFLLLQMIPQFSALIAIFVLSQLLGL------IN 142
Cdd:PRK10998  78 pfpvLLWLWNSVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQyipfigLN 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691 143 SHMALVLIYVAGmIPMNTYLMKGYLDAIPKDLDESARMDGASNFRIFIEIIMPLSKPIVAVVALFSFTGPLGDFILSSTI 222
Cdd:PRK10998 158 THGGVIFAYLGG-IALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLL 236

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488138691 223 LRTPDKYTLPIGLYNLVAQKmGASYTTYAAGAVLIAVPVAILYLALQKYFVSGLTSGSTKG 283
Cdd:PRK10998 237 LRDVNSYTLAVGMQQYLNPQ-NYLWGDFAAAAVLSAIPITVVFLLAQRWLVGGLTAGGVKG 296
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 76-261 1.32e-16

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 75.78  E-value: 1.32e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691  76 YWNSMKISFLTMVLTLISVSFTAYAFSRFRFKGRQNGLMLFLLLQMIPQFSALIAIFVLSQLLG----LINSHMALVLIY 151
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLgwgiLPGLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691 152 VAGMIPMNTYLMKGYLDAIPKDLDESARMDGASNFRIFIEIIMPLSKPIVAVVALFSFTGPLGDFILSSTILrTPDKYTL 231
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLG-GGEAPGP 159

                        170       180       190
                 ....*....|....*....|....*....|
gi 488138691 232 PIGLYNLVAQKMGASYTTYAAGAVLIAVPV 261
Cdd:cd06261  160 GTGLLLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 93-276 1.34e-12

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 64.63  E-value: 1.34e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691   93 SVSFTAYAFSRFRFKGRQNGLMLFLLLQMIPQFSALIAIFVLSQLLGLINSHMALVLIYVAGMIPMNTYLMKGYLDAIPK 172
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691  173 DLDESARMDGASNFRIFIEIIMPLSKPIVAVVALFSFTGPLGDFILSSTILRTPDKYTLPIGLYNlvaQKMGASYTTYAA 252
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAIL---GYDYPEIQGPVL 157

                         170       180
                  ....*....|....*....|....
gi 488138691  253 GAVLIAVPVAILYLALQKYFVSGL 276
Cdd:pfam00528 158 AAALILLLLNLLVDILQRLLDPRV 181
 
Name Accession Description Interval E-value
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 1-283 5.67e-132

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 375.26  E-value: 5.67e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691   1 MAKSQSIKQEKWIRLSLSWLVIILVSVIIIYPLIWTVGASLNAGNSLLSTSIIPENLSFQHYADLFnGEVNYMTWYWNSM 80
Cdd:COG3833    1 MSRRKSRKRRRRLKLGLRHLVLIILAIIALFPILWVVSASFNPGGSLYSSSLIPENFTLENYKKLF-TETPFLRWFLNSL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691  81 KISFLTMVLTLISVSFTAYAFSRFRFKGRQNGLMLFLLLQMIPQFSALIAIFVLSQLLGLINSHMALVLIYVAGMIPMNT 160
Cdd:COG3833   80 IVAVVTAIISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLLSALGLLNTLLGLILVYLGGAIPFNT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691 161 YLMKGYLDAIPKDLDESARMDGASNFRIFIEIIMPLSKPIVAVVALFSFTGPLGDFILSSTILRTPDKYTLPIGLYNLVA 240
Cdd:COG3833  160 WLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPENYTLAVGLYSFVS 239

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 488138691 241 QKMGASYTTYAAGAVLIAVPVAILYLALQKYFVSGLTSGSTKG 283
Cdd:COG3833  240 DQRNTNWGVFAAGAVLVAIPIVILFLFLQRYLVSGLTAGGVKG 282
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 31-283 3.02e-80

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 243.85  E-value: 3.02e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691  31 YPLIWTVGASLNAGNSLLST--SIIPENLSFQHYADLFNgEVNYMTWYWNSMKISFLTMVLTLISVSFTAYAFSRFRFKG 108
Cdd:COG0395   30 FPLYWMVVTSFKPPAEIFSGppSLLPSEFTLENYRAAFT-DGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRG 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691 109 RQNGLMLFLLLQMIPQFSALIAIFVLSQLLGLINSHMALVLIYVAGMIPMNTYLMKGYLDAIPKDLDESARMDGASNFRI 188
Cdd:COG0395  109 RKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRI 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691 189 FIEIIMPLSKPIVAVVALFSFTGPLGDFILSSTILRTPDKYTLPIGLYNLVAQkMGASYTTYAAGAVLIAVPVAILYLAL 268
Cdd:COG0395  189 FWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQ-YGTDWGLLMAAAVIATLPVLILFLFL 267

                        250
                 ....*....|....*
gi 488138691 269 QKYFVSGLTSGSTKG 283
Cdd:COG0395  268 QRYFVRGLTAGAVKG 282
malG PRK10998
maltose ABC transporter permease MalG;
1-283 1.31e-49

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 165.65  E-value: 1.31e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691   1 MAKSQSiKQEKWiRLSLSWLVIILVSVIIIYPLIWTVGASLNAGNsLLSTSIIPENLSFQHYADLFNGEVNY-------- 72
Cdd:PRK10998   1 MAMVQP-KSQKL-RLFATHLLLLGFIALIMFPLLMVIAISLREGN-FATGSLIPEQISWEHWKLALGFSVEHadgrvtpp 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691  73 ----MTWYWNSMKISFLTMVLTLISVSFTAYAFSRFRFKGRQNGLMLFLLLQMIPQFSALIAIFVLSQLLGL------IN 142
Cdd:PRK10998  78 pfpvLLWLWNSVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQyipfigLN 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691 143 SHMALVLIYVAGmIPMNTYLMKGYLDAIPKDLDESARMDGASNFRIFIEIIMPLSKPIVAVVALFSFTGPLGDFILSSTI 222
Cdd:PRK10998 158 THGGVIFAYLGG-IALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLL 236

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488138691 223 LRTPDKYTLPIGLYNLVAQKmGASYTTYAAGAVLIAVPVAILYLALQKYFVSGLTSGSTKG 283
Cdd:PRK10998 237 LRDVNSYTLAVGMQQYLNPQ-NYLWGDFAAAAVLSAIPITVVFLLAQRWLVGGLTAGGVKG 296
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 32-268 3.80e-32

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 119.06  E-value: 3.80e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691  32 PLIWTVGASLNAGNSLlstSIIPENLSFQHYADLFNGEvNYMTWYWNSMKISFLTMVLTLISVSFTAYAFSRFRFKGRQN 111
Cdd:COG1177   23 PILVLVLYSFNDSWFL---TFPPEGFTLRWYAELFSDP-RLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRL 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691 112 GLMLFLLLQMIPQFSALIAIFVLSQLLGLINSHMALVLIYVAGMIPMNTYLMKGYLDAIPKDLDESARMDGASNFRIFIE 191
Cdd:COG1177   99 LLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRR 178

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488138691 192 IIMPLSKPIVAVVALFSFTGPLGDFILSStILRTPDKYTLPIGLYNLVAQkmGASYTTYAAGAVLIAVPVAILYLAL 268
Cdd:COG1177  179 VTLPLIAPGILAGALLAFTLSFDEFVITL-FLAGPGVTTLPVYIYSMIRR--GISPEINALSTLLILLSLLLLLLAE 252
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
50-268 2.16e-17

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 81.75  E-value: 2.16e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691  50 TSIIPENLSFQHYADLFnGEVNYMTWYWNSMKISFLTMVLTLISVSFTAYAFSRFRFKGRQNGLMLFLLLQMIPQFS--- 126
Cdd:COG1178  315 TKALDDNLTLDNYRFVL-LDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVlgl 393

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691 127 ALIAIFVLSQLLGLINSHMALVLIYVAGMIPMNTYLMKGYLDAIPKDLDESARMDGASNFRIFIEIIMPLSKPIVAVVAL 206
Cdd:COG1178  394 GLLLLFNRPLPLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAAL 473

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488138691 207 FSFTGPLGDFILSStILRTPDKYTLPIGLYNLvaqkMGASYTTYAAGAVLIAVPVAILYLAL 268
Cdd:COG1178  474 LVFVTSMKELSATL-LLRPPGFETLAVLIYQL----ASSGRYGEAAALALLLVLVSLLPVLL 530
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 76-261 1.32e-16

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 75.78  E-value: 1.32e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691  76 YWNSMKISFLTMVLTLISVSFTAYAFSRFRFKGRQNGLMLFLLLQMIPQFSALIAIFVLSQLLG----LINSHMALVLIY 151
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLgwgiLPGLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691 152 VAGMIPMNTYLMKGYLDAIPKDLDESARMDGASNFRIFIEIIMPLSKPIVAVVALFSFTGPLGDFILSSTILrTPDKYTL 231
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLG-GGEAPGP 159

                        170       180       190
                 ....*....|....*....|....*....|
gi 488138691 232 PIGLYNLVAQKMGASYTTYAAGAVLIAVPV 261
Cdd:cd06261  160 GTGLLLIFAILFPGDLGVAAAVALILLLLS 189
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 31-272 5.70e-16

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 75.95  E-value: 5.70e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691  31 YPLIWTVGASLNAGNSllsTSIIPENLSFQHYADLFNGEVNYMTwYWNSMKISFLTMVLTLIsVSF-TAYAFSRFRFKGR 109
Cdd:COG1176   28 LPLLLLLVYSFTTRDP---YGGVVPGFTLENYARLFTDPLYLKV-LLRTLWIALLTTLICLL-LGYpIAYFLARAPPRWR 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691 110 QnglmLFLLLQMIPQF---------------------SALIAIFVLSQLLGLINSHMALVLIYVAGMIPMNTYLMKGYLD 168
Cdd:COG1176  103 N----LLLLLVILPFWtsflvrtyawivllgrngllnSLLLALGLIDEPLRLLYTEFAVVIGLVYVYLPFMVLPLYAALE 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691 169 AIPKDLDESARMDGASNFRIFIEIIMPLSKPIVAVVALFSFTGPLGDFILSStILRTPDKYTLPiglyNLVAQKMGAS-- 246
Cdd:COG1176  179 KIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPA-LLGGGKVLMIG----NLIYQQFLSAln 253

                        250       260
                 ....*....|....*....|....*.
gi 488138691 247 YTTYAAGAVLIAVPVAILYLALQKYF 272
Cdd:COG1176  254 WPLAAALAVVLLLIVLLVLLLYLRLL 279
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 57-267 3.21e-14

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 70.78  E-value: 3.21e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691  57 LSFQHYADLFNGEvNYMTWYWNSMKISFLTMVLTLISVSFTAYAFSRFRFKGRQ--NGlMLFLLLqMIPQFSALIAIFVL 134
Cdd:PRK09500  41 FTTKWYELLFNND-SLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKfvSG-MLFVVM-MSPDIVMAISLLVL 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691 135 SQLLGLINSHMALVLIYVAGMIPMNTYLMKGYLDAIPKDLDESARMDGASNFRIFIEIIMPLSKPIVAVVALFSFTGPLG 214
Cdd:PRK09500 118 FMLLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLD 197

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 488138691 215 DFILSStILRTPDKYTLPIGLYNLVaqKMGASYTTYAAGAVLIAVPVAILYLA 267
Cdd:PRK09500 198 DVVVSS-FVTGPSYEILPLKIYSMV--KVGVSPEVNALATILLVLSLVLVILS 247
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
51-276 1.25e-12

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 66.30  E-value: 1.25e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691  51 SIIPENLSFQHYADLFNGEVNYMTWYWNSMKISFLTMVLTL----ISVS-FTAYAFSRFRFKGRQNGLMLFLLLQMIPqf 125
Cdd:PRK10973  47 TLIPGTHLLENIANIWVNGVGNNSAPFGRMLLNSFVMAFSItvgkITVSmLSAFAIVWFRFPLRNLFFWMIFITLMLP-- 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691 126 sALIAIFVLSQL---LGLINSHMALVLIYVAGMIPmnTYLMKGYLDAIPKDLDESARMDGASNFRIFIEIIMPLSKPIVA 202
Cdd:PRK10973 125 -VEVRIFPTVEVianLKMLDSYAGLTLPLMASATA--TFLFRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLA 201

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488138691 203 VVALFSFTGPLGDFILSSTILRTPDKYTLPIGLYNLVAQKMGASYTTYAAGAVLIA-VPVAILYLALQKYFVSGL 276
Cdd:PRK10973 202 ALFVITFIYGWNQYLWPLLIITDVSLGTAVAGIKGMIATGEGTTEWNQVMAAMLLTlIPPVVIVLAMQRAFVRGL 276
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 93-276 1.34e-12

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 64.63  E-value: 1.34e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691   93 SVSFTAYAFSRFRFKGRQNGLMLFLLLQMIPQFSALIAIFVLSQLLGLINSHMALVLIYVAGMIPMNTYLMKGYLDAIPK 172
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691  173 DLDESARMDGASNFRIFIEIIMPLSKPIVAVVALFSFTGPLGDFILSSTILRTPDKYTLPIGLYNlvaQKMGASYTTYAA 252
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAIL---GYDYPEIQGPVL 157

                         170       180
                  ....*....|....*....|....
gi 488138691  253 GAVLIAVPVAILYLALQKYFVSGL 276
Cdd:pfam00528 158 AAALILLLLNLLVDILQRLLDPRV 181
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
31-270 4.80e-12

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 64.77  E-value: 4.80e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691  31 YPLIWTVGASLNAGNSLLSTsiiPENLSFQHYADLFNGEVnymtwYWNSMKIsflTMVLTLISVSFT-------AYAFSR 103
Cdd:COG1175   37 YPLLYTLYLSFTDWNLLGPP---PEFVGLDNYARLFTDPR-----FWNALGN---TLLFTVVSVPLQlvlglllALLLNR 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691 104 fRFKGRQNGLMLFLLLQMIPQF-SALIAIFVLSQLLGLIN-------------------SHMALVLIYVAGMIPMNTYLM 163
Cdd:COG1175  106 -KLRGRGFFRTLFFLPWVISPVvVALIWKWLFNPDYGLLNallgalglepinwlgdpslALPAVIIVTVWKGTGFNMLIF 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691 164 KGYLDAIPKDLDESARMDGASNFRIFIEIIMPLSKPIVAVVALFSFTGPLGDFILSSTILR-TPDK--YTLPIGLYNL-- 238
Cdd:COG1175  185 LAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGgGPGNstTTLVLYIYQTaf 264

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 488138691 239 VAQKMGASyttyAAGAV---LIAVPVAILYLALQK 270
Cdd:COG1175  265 QQFDFGYA----SAIAVvlfLIILVLTLLQLRLLR 295
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
77-283 2.14e-11

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 63.64  E-value: 2.14e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691  77 WNSMKISFLTMVLTLISVSFTAYAFSRFRFKGRQNGLMLFLLLQMIPQF---SALIAIF--------VLSQLLGL----I 141
Cdd:COG1178   57 GNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYvvaLAWIALFgpngllntLLRALFGLeppdI 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691 142 NSHMALVLIYVAGMIPMNTYLMKGYLDAIPKDLDESARMDGASNFRIFIEIIMPLSKPIVAVVALFSFTGPLGDFILSSt 221
Cdd:COG1178  137 YGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPL- 215

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488138691 222 ILRTpDKYTLPIGLYNLVAQkmGASYTTYAAGAVLIAVPVAILyLALQKYFVSGLTSGSTKG 283
Cdd:COG1178  216 VLGG-GYTTLTTAIYQAWLG--DFDLGAAAALALVLLLLVLLL-LLLERRLRRRRRYATVGG 273
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
72-200 1.24e-04

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 42.51  E-value: 1.24e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691  72 YMTWYWNSMKISFLTMVLTLISVSFTAyAFSRFRFKGRQNGLMLFLL-LQMIPQFSALIAIFVLSQLLGLI--------- 141
Cdd:PRK10561  53 YLDSFWTTIKFSTLVTVSGLLVSLFFA-ALVDYVVRGSRFYQTLMLLpYAVAPAVAAVLWIFLFNPGRGLIthflaefgy 131

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488138691 142 ------NSHMALVLIYVAGM---IPMNTYLMKGYLDAIPKDLDESARMDGASNFRIFIEIIMPLSKPI 200
Cdd:PRK10561 132 dwnhaqNSGQAMFLVVFASVwkqISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPV 199
modB PRK09421
molybdate ABC transporter permease subunit;
79-268 1.71e-04

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 41.83  E-value: 1.71e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691  79 SMKISFLTMVLTLISVSFTAYAFSRFRFKGRQ--NGLM------------LFLLLQMIPQfsALIAIFvLSQLLGLINSH 144
Cdd:PRK09421  14 SLKVSSVAVLFSLPFGILVAWLLARCRFPGKSllDSLLhlplvlppvvtgYLLLISMGRR--GFIGQW-LYEWFGISFAF 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138691 145 ----MALVLIYVAgmIPMNTYLMKGYLDAIPKDLDESARMDGASNFRIFIEIIMPLSKPIVAVVALFSFTGPLGDFilSS 220
Cdd:PRK09421  91 swrgAALAAAVMA--FPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEF--GA 166

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 488138691 221 TIL---RTPDK-YTLPIGLYNLVaQKMGASyttyAAGAVLIAVPVAILYLAL 268
Cdd:PRK09421 167 TITfvsNIPGEtQTIPSAMYTLI-QTPGGE----SAAARLCIISIAIALASL 213
malF PRK10999
maltose ABC transporter permease MalF;
161-209 5.46e-03

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 38.02  E-value: 5.46e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 488138691 161 YLM---KGYLDAIPKDLDESARMDGASNFRIFIEIIMPLS-KPIVA-VVALFSF 209
Cdd:PRK10999 389 YMMilcMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLiKPLTPlMIASFAF 442
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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