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Conserved domains on  [gi|488138388|ref|WP_002209596|]
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MULTISPECIES: molecular chaperone [Yersinia pseudotuberculosis complex]

Protein Classification

molecular chaperone( domain architecture ID 11459711)

molecular chaperone belonging to the periplasmic pilus chaperone family may be involved in fimbrial biogenesis; similar to Escherichia coli fimbrial chaperones, YraI, YqiH, YbgP and ElfD

CATH:  2.60.40.10
Gene Ontology:  GO:0061077|GO:0030288|GO:0043711
PubMed:  1683764|8670884
SCOP:  4002248|4007561

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
13-235 1.86e-73

P pilus assembly protein, chaperone PapD [Extracellular structures];


:

Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 223.71  E-value: 1.86e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  13 RLWAKTALFGIALWLTALTSQAAINLDRTRIIFNSTDKSASVILQNQSpSSPYLAQSWLENTKGQ----KIESPLVALPP 88
Cdd:COG3121    2 KRLLRLLLLALLLLLASAAAAAGISISPTRVIYPAGDKEASLTLTNTG-DTPYLVQSWVDDWDQDagpdKATAPFVVTPP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  89 MQRIDAGQKSQVRIMKLPDadKLPTDRETLFYFNVREIPPQSEMN---NVVQIAIQNRIKLFYRPMAIKANySDIWQEKL 165
Cdd:COG3121   81 LFRLEPGKSQTVRIIRTGP--PLPQDRESLFRLNVDEIPPKDASEegkNTLQIALRTRIKLFYRPAGLKGS-PEDAAEKL 157
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488138388 166 QISKLVGGLKINNPTPYYITLAYLSQNEQGNFPGFDSVMIAPFGTEFVKTP----GYSGSRYNVGYMDDFGGIV 235
Cdd:COG3121  158 TWSLVGNGLTVTNPGPYYVTLSDLSLGAGGKKLKKGLGMVLPGSTRRWPLPagasLAAGGKVTWATINDYGGAV 231
 
Name Accession Description Interval E-value
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
13-235 1.86e-73

P pilus assembly protein, chaperone PapD [Extracellular structures];


Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 223.71  E-value: 1.86e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  13 RLWAKTALFGIALWLTALTSQAAINLDRTRIIFNSTDKSASVILQNQSpSSPYLAQSWLENTKGQ----KIESPLVALPP 88
Cdd:COG3121    2 KRLLRLLLLALLLLLASAAAAAGISISPTRVIYPAGDKEASLTLTNTG-DTPYLVQSWVDDWDQDagpdKATAPFVVTPP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  89 MQRIDAGQKSQVRIMKLPDadKLPTDRETLFYFNVREIPPQSEMN---NVVQIAIQNRIKLFYRPMAIKANySDIWQEKL 165
Cdd:COG3121   81 LFRLEPGKSQTVRIIRTGP--PLPQDRESLFRLNVDEIPPKDASEegkNTLQIALRTRIKLFYRPAGLKGS-PEDAAEKL 157
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488138388 166 QISKLVGGLKINNPTPYYITLAYLSQNEQGNFPGFDSVMIAPFGTEFVKTP----GYSGSRYNVGYMDDFGGIV 235
Cdd:COG3121  158 TWSLVGNGLTVTNPGPYYVTLSDLSLGAGGKKLKKGLGMVLPGSTRRWPLPagasLAAGGKVTWATINDYGGAV 231
PRK15254 PRK15254
fimbrial chaperone protein StdC; Provisional
23-251 8.51e-66

fimbrial chaperone protein StdC; Provisional


Pssm-ID: 185166 [Multi-domain]  Cd Length: 239  Bit Score: 204.62  E-value: 8.51e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  23 IALWLTALTSQ---AAINLDRTRIIFNSTDKSASVILQNQSPSSPYLAQSWLENTKGQKIESpLVALPPMQRIDAGQKSQ 99
Cdd:PRK15254   2 ILLALAAAWSQyspAAVNVDRTRIIMDAPQKTVAITLNNDDKTTPFLAQSWVTDADGVRTDA-LMALPPLQRIDAGQKSQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388 100 VRIMKLPD-ADKLPTDRETLFYFNVREIPPQSEMNNVVQIAIQNRIKLFYRPMAIKANYSDIWQEKLQISKLVGGLKINN 178
Cdd:PRK15254  81 VRITQVRGlTDKLPQDRETLFWFNVRGVPPKPEDDNVLQLAMQSQLKLFYRPKAIIRSSSDQPERKLTAERNAGHLTLRN 160
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488138388 179 PTPYYITLAYLSQNEQGNFPGF-DSVMIAPFGTEFVKT--PGYSGSRYnVGYMDDFGGIVIRTFNCLSAECQIQPA 251
Cdd:PRK15254 161 PTPYYITVAWLGADRSHRLSGFrEGVMVPPLGSLPLKAvlPAETRTLW-VGYIDDYGGLQMNRYACDALNCAFKDA 235
PapD_N pfam00345
Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich ...
36-154 6.02e-46

Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich fold. This domain is the n-terminal part of the PapD chaperone protein for pilus and flagellar assembly.


Pssm-ID: 425623  Cd Length: 123  Bit Score: 149.66  E-value: 6.02e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388   36 INLDRTRIIFNSTDKSASVILQNQSPSsPYLAQSWLENTKGQ----KIESPLVALPPMQRIDAGQKSQVRIMKlpDADKL 111
Cdd:pfam00345   1 VVLGGTRVIYPAGEKEASVTVSNTGDN-PYLVQSWVDDGNEEgtdeKAKAPFIVTPPLFRLEPGQEQVLRIYT--TGPPL 77
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 488138388  112 PTDRETLFYFNVREIPP---QSEMNNVVQIAIQNRIKLFYRPMAIK 154
Cdd:pfam00345  78 PTDRESLFWLNVLEIPPkdkPKGGQNGLQLALRSRIKLFYRPAGLA 123
 
Name Accession Description Interval E-value
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
13-235 1.86e-73

P pilus assembly protein, chaperone PapD [Extracellular structures];


Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 223.71  E-value: 1.86e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  13 RLWAKTALFGIALWLTALTSQAAINLDRTRIIFNSTDKSASVILQNQSpSSPYLAQSWLENTKGQ----KIESPLVALPP 88
Cdd:COG3121    2 KRLLRLLLLALLLLLASAAAAAGISISPTRVIYPAGDKEASLTLTNTG-DTPYLVQSWVDDWDQDagpdKATAPFVVTPP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  89 MQRIDAGQKSQVRIMKLPDadKLPTDRETLFYFNVREIPPQSEMN---NVVQIAIQNRIKLFYRPMAIKANySDIWQEKL 165
Cdd:COG3121   81 LFRLEPGKSQTVRIIRTGP--PLPQDRESLFRLNVDEIPPKDASEegkNTLQIALRTRIKLFYRPAGLKGS-PEDAAEKL 157
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488138388 166 QISKLVGGLKINNPTPYYITLAYLSQNEQGNFPGFDSVMIAPFGTEFVKTP----GYSGSRYNVGYMDDFGGIV 235
Cdd:COG3121  158 TWSLVGNGLTVTNPGPYYVTLSDLSLGAGGKKLKKGLGMVLPGSTRRWPLPagasLAAGGKVTWATINDYGGAV 231
PRK15254 PRK15254
fimbrial chaperone protein StdC; Provisional
23-251 8.51e-66

fimbrial chaperone protein StdC; Provisional


Pssm-ID: 185166 [Multi-domain]  Cd Length: 239  Bit Score: 204.62  E-value: 8.51e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  23 IALWLTALTSQ---AAINLDRTRIIFNSTDKSASVILQNQSPSSPYLAQSWLENTKGQKIESpLVALPPMQRIDAGQKSQ 99
Cdd:PRK15254   2 ILLALAAAWSQyspAAVNVDRTRIIMDAPQKTVAITLNNDDKTTPFLAQSWVTDADGVRTDA-LMALPPLQRIDAGQKSQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388 100 VRIMKLPD-ADKLPTDRETLFYFNVREIPPQSEMNNVVQIAIQNRIKLFYRPMAIKANYSDIWQEKLQISKLVGGLKINN 178
Cdd:PRK15254  81 VRITQVRGlTDKLPQDRETLFWFNVRGVPPKPEDDNVLQLAMQSQLKLFYRPKAIIRSSSDQPERKLTAERNAGHLTLRN 160
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488138388 179 PTPYYITLAYLSQNEQGNFPGF-DSVMIAPFGTEFVKT--PGYSGSRYnVGYMDDFGGIVIRTFNCLSAECQIQPA 251
Cdd:PRK15254 161 PTPYYITVAWLGADRSHRLSGFrEGVMVPPLGSLPLKAvlPAETRTLW-VGYIDDYGGLQMNRYACDALNCAFKDA 235
PRK15274 PRK15274
putative periplasmic fimbrial chaperone protein SteC; Provisional
17-254 6.18e-64

putative periplasmic fimbrial chaperone protein SteC; Provisional


Pssm-ID: 185177 [Multi-domain]  Cd Length: 257  Bit Score: 200.39  E-value: 6.18e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  17 KTALFGIALWLTALTSQAAINLDRTRIIFNSTDKSASVILQNQSPSSPYLAQSWLENTKGQKIESPLVALPPMQRIDAGQ 96
Cdd:PRK15274   9 RQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKS 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  97 KSQVRIMKLPDADKLPTDRETLFYFNVREIPPQSEMNNVVQIAIQNRIKLFYRPMAI--KANYSDIWQEKLQISKLVGGL 174
Cdd:PRK15274  89 DGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVarQVDKTHPWQTKLTLTYQGDGV 168
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388 175 KINNPTPYYITLAYLSQNEQGNFPGFDSVMIAPfgTEFVKTP--GYS-GSRYNVGYMDDFGGIVIRTFNCLSAECQIQPA 251
Cdd:PRK15274 169 IFDNPTPFYLVISNAGSKENETASGFKNLLIAP--REKVTSPikGASlGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEE 246

                 ...
gi 488138388 252 EKR 254
Cdd:PRK15274 247 KTR 249
PRK15285 PRK15285
fimbrial chaperone StfD;
31-255 2.21e-60

fimbrial chaperone StfD;


Pssm-ID: 185185 [Multi-domain]  Cd Length: 250  Bit Score: 191.15  E-value: 2.21e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  31 TSQAAINLDRTRIIFNSTDKSASVILQNQSPSSPYLAQSWLENTKGQKIESPLVALPPMQRIDAGQKSQVRIMKLPDADK 110
Cdd:PRK15285  22 SAQAAIAPDRTRLVFRGEDKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALAS 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388 111 LPTDRETLFYFNVREIPPQSEMNNVVQIAIQNRIKLFYRPMAI-KANYSDIWQEKLQISKLVGGLKINNPTPYYITLAYL 189
Cdd:PRK15285 102 LPQDRETLFYYNVREIPPQSDKPNTLQIALQTRIKVFYRPQALsKIDMQHPWQYKITLQRQGNGYQVSNPTGYYVVLSNA 181
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488138388 190 SQNEQGN-FPGFDSVMIAPFGTefvKTPGYSGSRYN----VGYMDDFGGIVIRTFNCLSAECQIQPAEKRR 255
Cdd:PRK15285 182 SNRMDGTpARGFSPLVIAPKSN---VTLGGDASELGhspvLTYVNDYGARLPLIFNCTDNSCAVDEAKSRK 249
PRK09926 PRK09926
fimbrial chaperone;
16-235 2.02e-48

fimbrial chaperone;


Pssm-ID: 236634 [Multi-domain]  Cd Length: 246  Bit Score: 160.27  E-value: 2.02e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  16 AKTALFGIALwLTALTSQAAINLDRTRIIFNSTDKSASVILQNQSpSSPYLAQSWLE----NTKGQKIESPLVALPPMQR 91
Cdd:PRK09926   8 TTALCFATCM-AFSSSSIADIVISGTRIIYKSDQKDVNVRLENKG-NNPLLVQSWLDtgddNAEPGSIKVPFTATPPVSR 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  92 IDAGQKSQVRIMKLpDADKLPTDRETLFYFNVREIPP-----QSEMNNVVQIAIQNRIKLFYRPMAIKANYSDI-----W 161
Cdd:PRK09926  86 IDPKRGQTIKLMYT-ASTALPKDRESVFWFNVLEVPPkpdaeKVANQSLLQLAFRTRIKLFYRPDGLKGNPSEAplalkW 164
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488138388 162 QEKLQISKLVggLKINNPTPYYITLAYLSQNEQGNFPGFDSVMIAPFGTEFVKTPGYSGSRYN--VGY--MDDFGGIV 235
Cdd:PRK09926 165 SWAGSEGKAS--LRVTNPTPYYVSFSSGDLEAGGKRYPVDSKMIAPFSDESMKVKGLSGKASSgkVHFyaINDFGGAI 240
PapD_N pfam00345
Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich ...
36-154 6.02e-46

Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich fold. This domain is the n-terminal part of the PapD chaperone protein for pilus and flagellar assembly.


Pssm-ID: 425623  Cd Length: 123  Bit Score: 149.66  E-value: 6.02e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388   36 INLDRTRIIFNSTDKSASVILQNQSPSsPYLAQSWLENTKGQ----KIESPLVALPPMQRIDAGQKSQVRIMKlpDADKL 111
Cdd:pfam00345   1 VVLGGTRVIYPAGEKEASVTVSNTGDN-PYLVQSWVDDGNEEgtdeKAKAPFIVTPPLFRLEPGQEQVLRIYT--TGPPL 77
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 488138388  112 PTDRETLFYFNVREIPP---QSEMNNVVQIAIQNRIKLFYRPMAIK 154
Cdd:pfam00345  78 PTDRESLFWLNVLEIPPkdkPKGGQNGLQLALRSRIKLFYRPAGLA 123
PRK15295 PRK15295
fimbrial assembly chaperone;
19-210 3.14e-36

fimbrial assembly chaperone;


Pssm-ID: 237936 [Multi-domain]  Cd Length: 226  Bit Score: 128.14  E-value: 3.14e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  19 ALFGIALWLTALTSQAAINLDRTRIIFNSTDKSASVILQNQSPSSPyLAQSWLENTKGQKI-ESPLVALPPMQRIDAGQK 97
Cdd:PRK15295   4 KKSVLVVLLTSHVAHASIVVGGTRLVFDGNNDESSINVENKDSKAN-LVQSWLSVVDPQVTnKQAFIITPPLFRLDAGQK 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  98 SQVRIMKlpDADKLPTDRETLFYFNVREIPPQSEM--NNVVQIAIQNRIKLFYRPMAIKANYSDIWQEKLQISKLVGGLK 175
Cdd:PRK15295  83 NSIRVIR--SGAPLPADRESMYWLNIKGIPSIDDNasANRVEISINTQIKLIYRPPALTKSTPDSQSQQLKWQTAGDVIT 160
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 488138388 176 INNPTPYYITLAYLSQNeqgNFPGFDSVMIAPFGT 210
Cdd:PRK15295 161 VNNPTPYYMNFASVTLN---SHEVKSATFVPPKSS 192
PRK15211 PRK15211
fimbrial chaperone;
16-194 7.33e-35

fimbrial chaperone;


Pssm-ID: 185133 [Multi-domain]  Cd Length: 229  Bit Score: 124.55  E-value: 7.33e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  16 AKTALFGIALWLTALTSQAAINLDRTRIIFNSTDKSASVILQNQSpSSPYLAQSWLENTKGQKIESPLVALPPMQRIDAG 95
Cdd:PRK15211   4 MKWGLVSLLSLAVCGQAMAAFVLNGTRFIYDEGRKNISFEVTNQA-DQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPK 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  96 QKSQVRIMKLPDAdkLPTDRETLFYFNVREIPPQSE--MNNVVQIAIQNRIKLFYRPMAIKANYSDIwQEKLQISKLVGG 173
Cdd:PRK15211  83 EKQIIRIMKTDSA--LPKDRESLFWLNVQEIPPKPKasEGNVLAVALNTQVKLIYRPKALKEGRENA-EKNLQIIHRGGE 159
                        170       180
                 ....*....|....*....|.
gi 488138388 174 LKINNPTPYYITLAYLSQNEQ 194
Cdd:PRK15211 160 TYLKNPTPYYFAVTGVKLNGQ 180
PRK15208 PRK15208
molecular chaperone LpfB;
23-232 1.33e-34

molecular chaperone LpfB;


Pssm-ID: 237925 [Multi-domain]  Cd Length: 228  Bit Score: 123.87  E-value: 1.33e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  23 IALWLTALTSQAA-INLDRTRIIFNSTDKSASVILQNQSPSSPYLAQSWLENTKGQKiESPLVALPPMQRIDAGQKSQVR 101
Cdd:PRK15208   9 LALALIAQNSFAGgVALSSTRVIYDGSKKEASLTVNNKSKTEEFLIQSWIDDANGNK-KTPFIITPPLFKLDPTKNNVLR 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388 102 IMKLPDAdkLPTDRETLFYFNVREIPPQSEMN---NVVQIAIQNRIKLFYRPMAIKANYSDIWQEkLQISKLVGGLKINN 178
Cdd:PRK15208  88 IVNITNT--LPQDRESVYWINVKAIPAKSEDAenkNVLQIAVRTRLKLFYRPAGLKGNSMDAWNK-LRFTRAGNQIKVEN 164
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 488138388 179 PTPYYITLAYLSQNEQgnfPGFDSVMIAPFGTEFVKTPGYSGSRYNVGY--MDDFG 232
Cdd:PRK15208 165 PSAFNLTFNQFYANGR---DIEKAGMVPAKGSLNIELPAGTGKVSEVKYniINDFG 217
PRK15218 PRK15218
fimbrial assembly chaperone;
23-232 8.72e-33

fimbrial assembly chaperone;


Pssm-ID: 185140 [Multi-domain]  Cd Length: 226  Bit Score: 119.32  E-value: 8.72e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  23 IALWLT--ALTSQAAINLDRTRIIFNSTDKSASVILQNQSPSSPyLAQSWLENTKG----QKIESPLVALPPMQRIDAGQ 96
Cdd:PRK15218   5 IALCLAcaAMPAWSGIYIYGTRIIYPAQKKDITVQLMNDGKRSS-LIQAWIDNGDTslppEKLQVPFIMTPPVIRVAANS 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  97 KSQVRIMKLpdADKLPTDRETLFYFNVREIPPQSEMN---NVVQIAIQNRIKLFYRPMAI----KANYSdiwqeKLQISK 169
Cdd:PRK15218  84 GQQLKIKKL--ANNLPGDRESLFYLNVLDIPPNSDENkdkNIIKFALQNRIKLIYRPPGVqkvdKATFS-----RLQLLR 156
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488138388 170 LVGGLKINNPTPYYITLAYLSQNEQGNfpgFDSVMIAPFGTEFVKTPgYSGSRYNVGYMDDFG 232
Cdd:PRK15218 157 APGSISVKNNSANWITIPEIKAKSKVN---KETLLLAPWSSQSITTT-VVVNSYTVTLIDDSG 215
PRK15195 PRK15195
molecular chaperone FimC;
17-234 2.55e-32

molecular chaperone FimC;


Pssm-ID: 185117 [Multi-domain]  Cd Length: 229  Bit Score: 118.04  E-value: 2.55e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  17 KTALFGIALWLTALTSQAA--INLDRTRIIFNSTDKSASVILQNQSPSSPYLAQSWLENTKGQKiESPLVALPPMQRIDA 94
Cdd:PRK15195   6 KLGMIIIFYLIISASVHAAggIALGATRVIYPADAKQTSLAIRNSHTNERYLVNSWIENSSGVK-EKSFIVTPPLFVSEP 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  95 GQKSQVRIMKLPDAdkLPTDRETLFYFNVREIPP----QSEMNNVVQIAIQNRIKLFYRPmaikANYSDIWQE---KLQI 167
Cdd:PRK15195  85 KSENTLRIIYAGPP--LAADRESLFWMNVKAIPSvdknALEGRNVLQLAILSRIKLFVRP----INLQELPEEapdTLKF 158
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488138388 168 SKLVGGLKINNPTPYYITLAYLSQNEQgnfpGFDSVMIAPFGTEFVKTPGYSGSRYNVGYMDDFGGI 234
Cdd:PRK15195 159 SRSGNHLKVHNPSPYYVTLVNLQVGSQ----KLGNAMIAPKVNSQIPLPSGVQGKLKFQTVNDYGAV 221
PRK15299 PRK15299
fimbrial chaperone protein StiB; Provisional
29-233 9.67e-32

fimbrial chaperone protein StiB; Provisional


Pssm-ID: 185199 [Multi-domain]  Cd Length: 227  Bit Score: 116.42  E-value: 9.67e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  29 ALTSQAAINLDRTRIIFNSTDKSASVILQNQSpSSPYLAQSWLENTK--GQKIESPLVALPPMQRIDAGQKSQVRIMKlp 106
Cdd:PRK15299  17 SLAHAAGINIGTTRVIFHGDAKDASISISNSD-NVPYLIQSWAQSISetGASGDAPFMVTPPLFRLNGGQKNVLRIIR-- 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388 107 DADKLPTDRETLFYFNVREIPPQSEMN--NVVQIAIQNRIKLFYRPMAIKANYSDIwQEKLQISKLVGGLKINNPTPYYI 184
Cdd:PRK15299  94 TGGNLPEDRESLYWLDIKSIPSSNPDNkhNTLMLAVKAEFKLIYRPKALTQKPEEV-ADRLTWSRQGRTLTVKNPTPYYM 172
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 488138388 185 TLAYLSQNEQG-NFPGFdsvmIAPFGTEFVKTPGYSGSRYNVGYMDDFGG 233
Cdd:PRK15299 173 NFATLSVGSQKvKAPRY----VAPFGNAQYTLPAAASGPIAWSIINDFGG 218
PRK15253 PRK15253
putative fimbrial assembly chaperone protein StcB; Provisional
9-240 3.33e-31

putative fimbrial assembly chaperone protein StcB; Provisional


Pssm-ID: 185165 [Multi-domain]  Cd Length: 242  Bit Score: 115.53  E-value: 3.33e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388   9 WRQQRLWAKTaLFGIALWLTALTSQAAINLDRTRIIFNSTDKSASVILQNQSPSSPyLAQSWLE--NTK--GQKIESPLV 84
Cdd:PRK15253   9 YKQGRVNMKI-LSAVLLSAIILPAHAGIVIYGTRVIYPAEKKEVVVQLVNQGEQAS-LVQSWIDdgNTSlpPEKIQVPFM 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  85 ALPPMQRIDAGQKSQVRIMKLPDAdkLPTDRETLFYFNVREIPPQSEMN---NVVQIAIQNRIKLFYRPMAIKANYSDIW 161
Cdd:PRK15253  87 LTPPVARVAAESGQQIKIKKMPNS--LPDNKESLFYLNVLDIPPNSQENagkNVLKFAMQNRIKLIWRPSRIAAVTKDSF 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388 162 QeKLQISKLVGGLKINNPTPYYITlayLSQNEQGNFPGFD-SVMIAPFGTEFVKTPGYSGSRYNVGYMDDFGGIVIRTFN 240
Cdd:PRK15253 165 Q-RIGLFRSNKTVIMKNDTANWIT---VTDVKAGNTKINDqTIMLPPLSTQNINMKYASTSQYEVTIIDDNGNYISSKIN 240
PRK15249 PRK15249
fimbrial chaperone;
7-217 1.44e-30

fimbrial chaperone;


Pssm-ID: 237930 [Multi-domain]  Cd Length: 253  Bit Score: 114.13  E-value: 1.44e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388   7 MIWRQQRLWAKTALFGIALWLTAltSQAAINLDRTRIIFNSTDKSASVILQNQSpSSPYLAQSWLEN-----TKGQKIES 81
Cdd:PRK15249   3 MDTRHSALYYLIVFLFLALPATA--SWASVTILGSRIIYPSTASSVDVQLKNND-AIPYIVQTWFDDgdmntSPENSSAM 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  82 PLVALPPMQRIDAGQKSQVRIMkLPDADKLPTDRETLFYFNVREIPP----QSEMNNVVQIAIQNRIKLFYRPMAIkANY 157
Cdd:PRK15249  80 PFIATPPVFRIQPKAGQVVRVI-YNNTKKLPQDRESVFWFNVLQVPPtnigSDSGQNKMLVMLRSRIKLFYRPDGL-GKP 157
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488138388 158 SDIwQEKLQISKLVG-----GLKINNPTPYYITLAYLSQNEQGNFPGFDSVMIAPFGTEFVKTPG 217
Cdd:PRK15249 158 DNL-AKKLQIKTVNKgsgksGIVIVNPQPWFASLSNLNVKVNGASYNLDADMIAPFSSQTWWLPG 221
PRK15246 PRK15246
fimbrial assembly chaperone;
33-232 1.19e-29

fimbrial assembly chaperone;


Pssm-ID: 185158 [Multi-domain]  Cd Length: 233  Bit Score: 111.21  E-value: 1.19e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  33 QAAINLDRTRIIFNSTDKSASVILQNQSpSSPYLAQSWLE----NTKGQKIESPLVALPPMQRIDAGQKSQVRIMkLPDA 108
Cdd:PRK15246   9 QAAVNIDRTRIIFASDDVAQSLTLSNDN-TTPMLLQVWTDagniDASPDNSKTPLVALPPVFKMQPGELRTLRLL-LSSR 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388 109 DKLPTDRETLFYFNVREIPP-QSEMNNV---VQIAIQNRIKLFYRPMAIKANYSDIwQEKLQISKLVGGLKINNPTPYYI 184
Cdd:PRK15246  87 QQLATDRESLFWLNIYQIPPvTQDIKNHprkLVLPLRLRLKILIRPTGLKAPTEAE-EKKLRFIAKENTIRIVNPTSWYM 165
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 488138388 185 TLAYLSQNEQgnfpGFDSVMIAPFG--TEFVKTPGYSGSRYNVGYMDDFG 232
Cdd:PRK15246 166 SLTLTMDNKK----SIGDIMVAPKTalDVPLTRSPTPGASINYAVINDSG 211
lfpB PRK15290
fimbrial chaperone;
34-234 3.99e-26

fimbrial chaperone;


Pssm-ID: 237934 [Multi-domain]  Cd Length: 243  Bit Score: 101.99  E-value: 3.99e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  34 AAINLDRTRIIFNSTDKSASVILQNQSPSSPYLAQSWLEN-TKGQKIESPLVALPPMQRIDAGQKSQVRIMKLPDADkLP 112
Cdd:PRK15290  37 AGVVIGGTRVVYLSNNPDKSISVFSKEEKIPYLIQAWVDPfNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKGVS-LP 115
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388 113 TDRETLFYFNVREIPPQS--EMNNVVQIAIQNRIKLFYRPMAI-----KANYSDIWQEklQISKLVgglkINNPTPYYIT 185
Cdd:PRK15290 116 DDRESVFWLNIKNIPPSAsnKATNSLEIAVKTRIKLFWRPASIrlipeDAAPKVKWRR--EGRNLI----AENPNPIHIS 189
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 488138388 186 LAYLSQNeqgnfpGFDSV--MIAPFGTEFVKTP-GYSGSRYNVGYMDDFGGI 234
Cdd:PRK15290 190 VMDVIVD------GHDVPlnMIRPFETLTLPLPaNSAGGQMTWRFINDYGAV 235
PRK11385 PRK11385
fimbrial chaperone;
15-192 8.95e-23

fimbrial chaperone;


Pssm-ID: 183112 [Multi-domain]  Cd Length: 236  Bit Score: 93.27  E-value: 8.95e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  15 WAKTAL--FGIALWLTALTSQAAINLDRTRIIFNSTDKSASVILQNQSpsspylAQSWLENTK-----------GQKIES 81
Cdd:PRK11385   5 WNRLALliFAVLSLLVAGELQAGVVVGGTRFIFPADRESISILLTNTS------QESWLINSKinrptrwaggeASTVPA 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  82 PLVALPPMQRIDAGQKSQVRIMKlPDADKLPTDRETLFYFNVREIPPQSEMNNVVQIAIQNRIKLFYRPMAIKANYSDIW 161
Cdd:PRK11385  79 PLLAAPPLILLKPGTTGTLRLLR-TESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAY 157
                        170       180       190
                 ....*....|....*....|....*....|.
gi 488138388 162 QEkLQISKLVGGLKINNPTPYYITLAYLSQN 192
Cdd:PRK11385 158 QQ-LRWTRNSQGVQLTNPTPYYINLIQVSVN 187
PRK15224 PRK15224
pili assembly chaperone PapD;
18-233 1.28e-22

pili assembly chaperone PapD;


Pssm-ID: 185146 [Multi-domain]  Cd Length: 237  Bit Score: 92.88  E-value: 1.28e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  18 TALFGIALWLTALTSQAAINLDRTRIIFNSTDKSASVILQNQSpSSPYLAQSWLEnTKGQKIESPLVALPPMQRIDAGQK 97
Cdd:PRK15224  12 TPVYAAEQKLNLNTKSFSVKLGATRVIYHAGTAGATLSVSNPQ-NYPILVQSSVK-AADKSSPAPFLVMPPLFRLEANQQ 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  98 SQVRIMKlpDADKLPTDRETLFYFNVREIPPQSEMNNV--------VQIAIQNRIKLFYRPMAIKANYSDIwQEKLQISK 169
Cdd:PRK15224  90 SQLRIVR--TGGDMPTDRETLQWVCIKAVPPENEPSDTqakgatldLNLSINVCDKLIFRPDAVKGTPEDV-AGNLRWVE 166
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488138388 170 LVGGLKINNPTPYYITLAYLSqneQGNFPGFDSVMIAPFGTEFVKTPGysGSRYNVGY--MDDFGG 233
Cdd:PRK15224 167 TGNKLKVENPTPFYMNLASVT---VGGKPITGLEYIPPFADKTLNMPG--SAHGDIEWrvITDFGG 227
PRK15188 PRK15188
fimbrial chaperone protein BcfB; Provisional
27-233 2.28e-20

fimbrial chaperone protein BcfB; Provisional


Pssm-ID: 185110 [Multi-domain]  Cd Length: 228  Bit Score: 86.36  E-value: 2.28e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  27 LTALTSQAAINLDRTRIIFNSTDKSASVILQNQSPSSPYLAQSWLENTKGQKiESPLVALPPMQRIDAGQKSQVRIMKLp 106
Cdd:PRK15188  20 LSFAAQAGGIALGATRVIYPQGSKQTSLPIINSSASNVFLIQSWVANADGSR-STDFIITPPLFVIQPKKENILRIMYV- 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388 107 dADKLPTDRETLFYFNVREIPPQSE---MNNVVQIAIQNRIKLFYRPMAIkANYSDIWQEKLQISKLVGGLKINNPTPYY 183
Cdd:PRK15188  98 -GPSLPTDRESVFYLNSKAIPSVDKnklTGNSLQIATQSVIKLFIRPKNL-AEAPAHAPSTLRCRNERGQLTITNPSPYY 175
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 488138388 184 ITLAYLSQNEQgnfpGFDSVMIAPFGT-EFVKTPGYSGSRynvgYMDDFGG 233
Cdd:PRK15188 176 VSMVELYSAGK----KLPNTMVPPKGAiTLPATPGQVSLR----TVNDFGA 218
PRK15192 PRK15192
pili/flagellar-assembly chaperone;
32-210 1.50e-18

pili/flagellar-assembly chaperone;


Pssm-ID: 185114 [Multi-domain]  Cd Length: 234  Bit Score: 81.67  E-value: 1.50e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  32 SQAAINLDRTRIIFNSTDKSASVILQNQSPSSPYLAQSWL-----ENTKGQKIESPLVALPPMQRIDAGQKSQVRIMKlp 106
Cdd:PRK15192  20 AQAGVVIGGTRFIYHAGAPALSVPVSNHSEASWLIDTHILpggrwPGTKNEGNITPFVVTPPLFMLSARQENSMRVVY-- 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388 107 DADKLPTDRETLFYFNVREIPPQSEMNNVVQIAIQNRIKLFYRPMAIKANYSDIWQEkLQISKLVGGLKINNPTPYYITL 186
Cdd:PRK15192  98 TGAPLPADRESLFTLSIAAIPSGKPEANRVQMAFRSALKLLYRPEGLAGNPQQAYRH-LIWSLTPDGATVRNPTPYYVTL 176
                        170       180
                 ....*....|....*....|....
gi 488138388 187 AYLSQNEQGNfpgFDSVMIAPFGT 210
Cdd:PRK15192 177 FLLRANERAQ---DNAGVVAPFAT 197
PapD_C pfam02753
Pili assembly chaperone PapD, C-terminal domain; Ig-like beta-sandwich fold. This domain is ...
176-235 1.46e-16

Pili assembly chaperone PapD, C-terminal domain; Ig-like beta-sandwich fold. This domain is the C-terminal part of the pilus and flagellar-assembly chaperone protein PapD.


Pssm-ID: 426960 [Multi-domain]  Cd Length: 63  Bit Score: 71.91  E-value: 1.46e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488138388  176 INNPTPYYITLAYLSQNEQGNFPGFDSVMIAPFGTEFV--KTPGYSGSRYNVGYMDDFGGIV 235
Cdd:pfam02753   1 VKNPTPYYVTFSSLSLGGGGKELALDPGMVAPFSSQTFagLPAPAAGGTVSYTYINDYGGIV 62
PRK15233 PRK15233
fimbrial chaperone SefB;
35-239 4.08e-16

fimbrial chaperone SefB;


Pssm-ID: 185149 [Multi-domain]  Cd Length: 246  Bit Score: 75.15  E-value: 4.08e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  35 AINLDRTRIIFNSTDKSASVILQNQSpSSPYLAQSWLENTKgQKIESPLVALPPMQRIDAGQKSQVRImkLPDADKLPTD 114
Cdd:PRK15233  41 GLRLGTTRVIYKEDAPSTSFWIMNEK-EYPILVQTQVYNDD-KSSKAPFIVTPPILKVESNARTRLKV--IPTSNLFNKN 116
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388 115 RETLFYFNVREIPP-----QSEMNNV-----VQIAIQNRIKLFYRPMAIKANYSDIwQEKLQISKLVGGLKINNPTPYYI 184
Cdd:PRK15233 117 EESLYWLCVKGVPPlndneSNNKNNIttnlnVNVVTNSCIKLIYRPKTIDLTTMEI-ADKLKLERKGNSIVIKNPTSSYV 195
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 488138388 185 TLAYL-SQNEQGNFPgfdSVMIAPFGteFVKTPGYSGSRYNVGYMDDFGGIVIRTF 239
Cdd:PRK15233 196 NIANIkSGNLSFNIP---NGYIEPFG--YAQLPGGVHSKITLTILDDNGAEIIRDY 246
PRK09918 PRK09918
putative fimbrial chaperone protein; Provisional
24-187 1.02e-13

putative fimbrial chaperone protein; Provisional


Pssm-ID: 236632 [Multi-domain]  Cd Length: 230  Bit Score: 68.14  E-value: 1.02e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388  24 ALWLTALTSQAA-INLDRTRIIFNSTDKSASVILQNQSpSSPYLAQSWLENTKGQKIESPLVAlPPMQRIDAGQKSQVR- 101
Cdd:PRK09918  13 VLLSSSSAVHAAgMVPETSVVIVEESDGEGSINVKNTD-SNPILLYTTLVDLPEDKSKLLLVT-PPVARVEPGQSQQVRf 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488138388 102 IMKlpdaDKLPTDRETLFYFNVREIPPQSEMNNVVQIAIQNRIKLFYRPMAIKANySDIWQeKLQISKLVGGLKINNPTP 181
Cdd:PRK09918  91 ILK----SGSPLNTEHLLRVSFEGVPPKPGGKNKVVMPIRQDLPVLIQPAALPVV-RDPWK-LLVWSISGNNLVVSNPSP 164

                 ....*.
gi 488138388 182 YYITLA 187
Cdd:PRK09918 165 YVVRLG 170
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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