|
Name |
Accession |
Description |
Interval |
E-value |
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
1-436 |
0e+00 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 831.63 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 1 MESTEKKEALMRIKAASKNELYRKLFDQYGTDYYYVVDESVKRNIPFFWKKNYEMLVAFPEDKQAENSEGTTQFHEQLMD 80
Cdd:PRK11889 1 MESTEKKEALMRIKAASKNELYRKLFDQYGTDYYYVVDESVKRNIPFFWKKNYEMLVAFPEDKQEEVNEGTAQFHEQLMD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 81 VVGEPSEEIVKVNGIQSVLHNLENVTTSMAYAAMQTGNSEEWARKKEKLLQLFEKGIVVVKRTEETKVAKKQPVVKQAIS 160
Cdd:PRK11889 81 VVNDPSEQIVKANGIQSVLHNLENVTTPMSYAAMQTGNSEEWARKKEKLLKLFEKGIVVVKQTEETKVTKKQKAVKKVVP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 161 VKKEEVVIKKEKQESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIGYILEDMRSHFNTENVFEKE 240
Cdd:PRK11889 161 VKKEEVVVKKEKQESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 241 VQTIALIGPTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRDEAAMTRALSYFKEEAR 320
Cdd:PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 321 VDYILIDTAGKNYRTSETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIP 400
Cdd:PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIP 400
|
410 420 430
....*....|....*....|....*....|....*.
gi 488114827 401 AVSSAPIVLMTDGQDVKQHIHIATAEHLAKQMLQTS 436
Cdd:PRK11889 401 AVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQTS 436
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
166-436 |
9.67e-166 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 466.53 E-value: 9.67e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 166 VVIKKEKQESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMITEEeVIGYILEDMRSHFNTENVFEKEVQTIA 245
Cdd:PRK06731 1 MVVKKEKQESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMITEE-VIEYILEDMSSHFNTENVFEKEVQTIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 246 LIGPTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRDEAAMTRALSYFKEEARVDYIL 325
Cdd:PRK06731 80 LIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYIL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 326 IDTAGKNYRTSETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSA 405
Cdd:PRK06731 160 IDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSA 239
|
250 260 270
....*....|....*....|....*....|.
gi 488114827 406 PIVLMTDGQDVKQHIHIATAEHLAKQMLQTS 436
Cdd:PRK06731 240 PIVLMTDGQDVKKNIHIATAEHLAKQMLQTS 270
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
242-432 |
2.37e-79 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 243.61 E-value: 2.37e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 242 QTIALIGPTGVGKTTTLAKMAWQFHAKR-KTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRDEAAMTRALSYFKEear 320
Cdd:cd17873 1 RVIALVGPTGVGKTTTLAKLAARYVLKKgKKVALITTDTYRIGAVEQLKTYAEIMGIPVEVAEDPEDLADALERLSD--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 321 VDYILIDTAGKNYRTSETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIP 400
Cdd:cd17873 78 RDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVLSATTKAKDLKEIIERFSPLGYRGLILTKLDETTSLGSVLSVL 157
|
170 180 190
....*....|....*....|....*....|..
gi 488114827 401 AVSSAPIVLMTDGQDVKQHIHIATAEHLAKQM 432
Cdd:cd17873 158 AESQLPVSYVTTGQRVPEDIEVASPLRLARLL 189
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
125-434 |
6.30e-75 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 238.23 E-value: 6.30e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 125 KKEKLLQLFEkgIVVV---KRTEETKVAKKQPVVKQAISVKKEEVVIKKE-----------------KQESVPFIIQKVI 184
Cdd:COG1419 35 KKGGFLKKVE--VTAAvdeDEAEKAPAAAAAPAAASAAAEEEELEELRRElaelkelleeqlsglagESARLPPELAELL 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 185 RMLEQNDVEQYFIHAYAEKLKVKFEnatmitEEEVIGYILEDMRSHFNT-ENVFEKEVQTIALIGPTGVGKTTTLAKMAW 263
Cdd:COG1419 113 ERLLEAGVSPELARELLEKLPEDLS------AEEAWRALLEALARRLPVaEDPLLDEGGVIALVGPTGVGKTTTIAKLAA 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 264 QFH-AKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRDEAAMTRALSYFKEearVDYILIDTAGKNYRTSETVEEM 342
Cdd:COG1419 187 RFVlRGKKKVALITTDTYRIGAVEQLKTYARILGVPVEVAYDPEELKEALERLRD---KDLVLIDTAGRSPRDPELIEEL 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 343 IETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQHIHI 422
Cdd:COG1419 264 KALLDAGPPIEVYLVLSATTKYEDLKEIVEAFSSLGLDGLILTKLDETASLGSILNLLIRTGLPLSYITNGQRVPEDIEV 343
|
330
....*....|..
gi 488114827 423 ATAEHLAKQMLQ 434
Cdd:COG1419 344 ADPERLARLLLG 355
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
10-330 |
2.02e-56 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 187.93 E-value: 2.02e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 10 LMRIKAASKNELYRKLFDQYGTDYYYVVDESVKRniPFFWKKNYEMLVAFPEDKQAENSEgttqfheqlmdvvgepsEEI 89
Cdd:TIGR03499 3 IKKFTAPTMREALKKVKEELGPDAVILSTRKVRK--GLFGKKFVEVTAAIDEEEAAAASA-----------------EEE 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 90 VKVNGIQSVLHNLENVTTSMAYAAMQTGNSEEWARKKEKLLQL--FEKGIVVVKRTEETKVAKKQPVVKqaisvkkeevv 167
Cdd:TIGR03499 64 ASKALEQADPKPLSATAEPLELPAPQEEPAAPAAQAAEPLLPEeeLRKELEALRELLERLLAGLAWLQR----------- 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 168 ikkekqesvPFIIQKVIRMLEQNDVEQYFIHAYAEKLKvKFENATMITEEEVigYILEDMRSHFNTENVFEKEVQTIALI 247
Cdd:TIGR03499 133 ---------PPERAKLYERLLEAGVSEELARELLEKLP-EDADAEDAWRWLR--EALEGMLPVKPEEDPILEQGGVIALV 200
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 248 GPTGVGKTTTLAKMAWQF--HAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRDEAAMTRALSYFKEearVDYIL 325
Cdd:TIGR03499 201 GPTGVGKTTTLAKLAARFalEHGKKKVALITTDTYRIGAVEQLKTYAEILGIPVKVARDPKELREALDRLRD---KDLIL 277
|
....*
gi 488114827 326 IDTAG 330
Cdd:TIGR03499 278 IDTAG 282
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
244-434 |
2.44e-48 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 170.46 E-value: 2.44e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 244 IALIGPTGVGKTTTLAKMAWQF--HAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRDEAAMTRALSYFKeeaRV 321
Cdd:PRK05703 224 VALVGPTGVGKTTTLAKLAARYalLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR---DC 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 322 DYILIDTAGKNYRTSETVEEMIETM-GQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIP 400
Cdd:PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIeFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLDETSSLGSILSLL 380
|
170 180 190
....*....|....*....|....*....|....
gi 488114827 401 AVSSAPIVLMTDGQDVKQHIHIATAEHLAKQMLQ 434
Cdd:PRK05703 381 IESGLPISYLTNGQRVPDDIKVANPEELVRLLLG 414
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
242-433 |
4.77e-47 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 160.27 E-value: 4.77e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 242 QTIALIGPTGVGKTTTLAKMAWQFHAK-RKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVR---DEAAM-TRALSYFK 316
Cdd:smart00962 2 GVILLVGPNGVGKTTTIAKLAARLKLKgGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGegaDPVAVaKDAVELAK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 317 EEaRVDYILIDTAGKNYRTSETVEEMIETMGQVEPDYIcLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGE 395
Cdd:smart00962 82 AR-GYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEV-LLVSDATTGQDAVEQAKAFNEaLGLTGIILTKLDGTAKGGA 159
|
170 180 190
....*....|....*....|....*....|....*...
gi 488114827 396 LLKIPAVSSAPIVLMTDGQDVKqHIHIATAEHLAKQML 433
Cdd:smart00962 160 ALSIAAETGLPIKFIGTGEKVP-DLEPFDPERFVSRLL 196
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
125-435 |
7.17e-44 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 158.36 E-value: 7.17e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 125 KKEKLLQLFEKGIVVVKRT---EETKVAKKQ-PVVKQAISVKKEEVVIK--KEKQESVPFIiqkviRMLEQNDVEQYFIH 198
Cdd:PRK12726 88 KKEKLLEMLAAGAELAQSTpllEERKTQEEElSAMRLELAALNRELAVKmrEEREQNSDFV-----KFLKGRGISDTYVA 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 199 AYAEKLKVKFENATMITEEEVIGYILEDMRSHFNTENVFE-KEVQTIALIGPTGVGKTTTLAKMAWQFHAKRKTVGFITT 277
Cdd:PRK12726 163 DFMQAGRKQFKQVETAHLDDITDWFVPYLSGKLAVEDSFDlSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITT 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 278 DHSRIGTVQQLQDYVKTIGSEVIAVRDEAAMTRALSYFKEEARVDYILIDTAGKNYRTSETVEEMIETMGQVEPDYICLT 357
Cdd:PRK12726 243 DTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFT 322
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488114827 358 LSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQHIHIATAEHLAKQMLQT 435
Cdd:PRK12726 323 FSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITENIFRPKSRWLAERFVGT 400
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
244-414 |
1.67e-35 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 129.58 E-value: 1.67e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 244 IALIGPTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVR---DEAAMT-RALSYFKEEa 319
Cdd:pfam00448 3 ILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKtgaDPAAVAfDAVEKAKAE- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 320 RVDYILIDTAGKNYRTSETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKI 399
Cdd:pfam00448 82 NYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALSI 161
|
170
....*....|....*
gi 488114827 400 PAVSSAPIVLMTDGQ 414
Cdd:pfam00448 162 VAETGKPIKFIGVGE 176
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
244-414 |
1.14e-29 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 114.01 E-value: 1.14e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 244 IALIGPTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRDEAA----MTRALSYFKEEA 319
Cdd:cd03115 3 ILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDpasiAQEAVEKAKLEG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 320 RvDYILIDTAGKNYRTSETVEEMIETMGQVEPDYICLTLSASMKSKDmIEIITNFKD-IHIDGIVFTKFDETASSGELLK 398
Cdd:cd03115 83 Y-DVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEA-LSQAKAFNEaVGLTGVILTKLDGTAKGGAALS 160
|
170
....*....|....*.
gi 488114827 399 IPAVSSAPIVLMTDGQ 414
Cdd:cd03115 161 IVAETKKPIKFIGVGE 176
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
244-428 |
2.31e-27 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 114.32 E-value: 2.31e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 244 IALIGPTGVGKTTTLAKMAWQF---HAKRKtVGFITTDHSRIGTVQQLQDYVKTIGsevIAVRdEAAMTRALSYFKEEAR 320
Cdd:PRK12727 353 IALVGPTGAGKTTTIAKLAQRFaaqHAPRD-VALVTTDTQRVGGREQLHSYGRQLG---IAVH-EADSAESLLDLLERLR 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 321 vDY--ILIDTAGKNYRTSETVEEM--IETMGQVEPdyiCLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGEL 396
Cdd:PRK12727 428 -DYklVLIDTAGMGQRDRALAAQLnwLRAARQVTS---LLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSA 503
|
170 180 190
....*....|....*....|....*....|..
gi 488114827 397 LKIPAVSSAPIVLMTDGQDVKQHIHIATAEHL 428
Cdd:PRK12727 504 LSVVVDHQMPITWVTDGQRVPDDLHRANAASL 535
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
222-436 |
2.56e-26 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 110.83 E-value: 2.56e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 222 YILEDMRSHFNTE-------NVFEKEVQTI-------------ALIGPTGVGKTTTLAKMAWQF---HAKRKtVGFITTD 278
Cdd:PRK06995 217 MLVDNLPEGDDAEaaldwvqSALAKNLPVLdsedalldrggvfALMGPTGVGKTTTTAKLAARCvmrHGASK-VALLTTD 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 279 HSRIGTVQQLQDYVKTIGSEVIAVRDEAAMTRALSYFKEEARVdyiLIDTAGKNYRtSETVEEMIETMGQVEPDyI--CL 356
Cdd:PRK06995 296 SYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKHIV---LIDTIGMSQR-DRMVSEQIAMLHGAGAP-VkrLL 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 357 TLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQHIHIATAEHLAKQMLQTS 436
Cdd:PRK06995 371 LLNATSHGDTLNEVVQAYRGPGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRVPEDLHLANKKFLLHRAFCAP 450
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
123-423 |
4.12e-26 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 108.84 E-value: 4.12e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 123 ARKKEKLLQlfekgivVVKRTEETKVakkQPVVKQAISVKKEevvIKKEKQESVPFIIQKVIRMLEQNDVEQYFIHAYAE 202
Cdd:PRK12723 67 EDEKRKILQ-------SIKKEENSSI---EDVLKEVKSLKNE---LAHKKEEINHPTILKIEDILRENDFSESYIKDINE 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 203 KLKVKFENATM----ITEEEVIGYILEDMRSHFNTENVFEKEVqtIALIGPTGVGKTTTLAKMAWQF----HAKRKTVGF 274
Cdd:PRK12723 134 FIKKEFSLSDLddydKVRDSVIIYIAKTIKCSGSIIDNLKKRV--FILVGPTGVGKTTTIAKLAAIYginsDDKSLNIKI 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 275 ITTDHSRIGTVQQLQDYVKTIGSEVIAVRDEAAMTRALSYFKEearVDYILIDTAGKNYRTSETVEEMIETMGQVEPDY- 353
Cdd:PRK12723 212 ITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKD---FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAe 288
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 354 ICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQHIHIA 423
Cdd:PRK12723 289 FHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIVPHNISIA 358
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
245-435 |
1.38e-22 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 100.65 E-value: 1.38e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 245 ALIGPTGVGKTTTLAKMAWQFHAK--RKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRDEAAMTRALSYFKEEarvD 322
Cdd:PRK14723 189 ALVGPTGVGKTTTTAKLAARCVARegADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK---H 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 323 YILIDTAGKNYRTSETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKdiH-----IDGIVFTKFDETASSGELL 397
Cdd:PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYR--HgagedVDGCIITKLDEATHLGPAL 343
|
170 180 190
....*....|....*....|....*....|....*...
gi 488114827 398 KIPAVSSAPIVLMTDGQDVKQHIHIATAEHLAKQMLQT 435
Cdd:PRK14723 344 DTVIRHRLPVHYVSTGQKVPEHLELAQADELVDRAFAT 381
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
245-436 |
2.27e-21 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 95.79 E-value: 2.27e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 245 ALIGPTGVGKTTTLAKMAWQF---HAKRKtVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRDEAAMTRALSYFKEEARV 321
Cdd:PRK14721 195 ALIGPTGVGKTTTTAKLAARAvirHGADK-VALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKHMV 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 322 dyiLIDTAGKNYRTSETVEE--MIETMGQVEPDYICLTLSASMKSKDmiEIITNFKDIHIDGIVFTKFDETASSGELLKi 399
Cdd:PRK14721 274 ---LIDTVGMSQRDQMLAEQiaMLSQCGTQVKHLLLLNATSSGDTLD--EVISAYQGHGIHGCIITKVDEAASLGIALD- 347
|
170 180 190
....*....|....*....|....*....|....*....
gi 488114827 400 pAVSSAPIVL--MTDGQDVKQHIHIATAEHLAKQMLQTS 436
Cdd:PRK14721 348 -AVIRRKLVLhyVTNGQKVPEDLHEANSRYLLHRIFKPS 385
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
236-416 |
1.05e-20 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 93.73 E-value: 1.05e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 236 VFEKEVQTIALIGPTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRDE----AAMTRA 311
Cdd:PRK00771 90 VLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNkdavEIAKEG 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 312 LSYFKEearVDYILIDTAGKNYRTSETVEEMIETMGQVEPDYICLTLSASMkSKDMIEIITNFKD-IHIDGIVFTKFDET 390
Cdd:PRK00771 170 LEKFKK---ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATI-GQQAKNQAKAFHEaVGIGGIIITKLDGT 245
|
170 180
....*....|....*....|....*.
gi 488114827 391 ASSGELLKIPAVSSAPIVLMTDGQDV 416
Cdd:PRK00771 246 AKGGGALSAVAETGAPIKFIGTGEKI 271
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
244-407 |
1.30e-19 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 86.11 E-value: 1.30e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 244 IALIGPTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRDEA----AMTRALSYFKEEA 319
Cdd:cd18539 3 ILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQspvdIAKRALEKAKEEG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 320 rVDYILIDTAGKNYRTSETVEEMIETMGQVEPDYICLTLSAsMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLK 398
Cdd:cd18539 83 -FDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDA-MTGQDAVNVAKAFNErLGLTGVVLTKLDGDARGGAALS 160
|
....*....
gi 488114827 399 IPAVSSAPI 407
Cdd:cd18539 161 IRHVTGKPI 169
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
231-430 |
1.36e-18 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 87.08 E-value: 1.36e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 231 FNTENVFEKEVQTIALIGPTGVGKTTTLAKMA----WQFHAKRktVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRDEA 306
Cdd:PRK14722 127 LDSEDALMERGGVFALMGPTGVGKTTTTAKLAarcvMRFGASK--VALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGG 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 307 AMTRALSYFKEEARVdyiLIDTAGKNYRTSETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDI--------- 377
Cdd:PRK14722 205 DLQLALAELRNKHMV---LIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAagqpkaalp 281
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 488114827 378 HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQHIHIATAEHLAK 430
Cdd:PRK14722 282 DLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKFLLK 334
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
162-430 |
6.16e-18 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 85.40 E-value: 6.16e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 162 KKEEVVIKKEKQESVPFIIQKVIRmleqndveQYFIHAYAEKLKVKFE----------NATMIteEEVIGYILEDMRSHF 231
Cdd:PRK12724 143 ESETTIVRKEKDSPLQRLGERLVR--------EGMSQSYVEEMASKLEerlspvdqgrNHNVT--ERAVTYLEERVSVDS 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 232 NT-ENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHAKR-KTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRDeaamt 309
Cdd:PRK12724 213 DLfSGTGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMgKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD----- 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 310 raLSYFKEEARVD---YILIDTAGKNYRTSETVEEM---IETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIV 383
Cdd:PRK12724 288 --IKKFKETLARDgseLILIDTAGYSHRNLEQLERMqsfYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRIL 365
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 488114827 384 FTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQHIHIATAEHLAK 430
Cdd:PRK12724 366 LTKLDEADFLGSFLELADTYSKSFTYLSVGQEVPFDILNATKNLMAE 412
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
126-415 |
9.16e-18 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 83.87 E-value: 9.16e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 126 KEKLLQLFEKGIVVVKRTEETKVAKKQPVVKQAISVKKEEVVIKKEKQESVPFI---IQKVIRMLE----QNDVEQYFIH 198
Cdd:PRK14974 6 KEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKekdIEDLLEELElellESDVALEVAE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 199 AYAEKLKVK--------FENATMITEEEVIGYILEDMRSHFNTENVFEKEVQ----TIALIGPTGVGKTTTLAKMAWQFH 266
Cdd:PRK14974 86 EILESLKEKlvgkkvkrGEDVEEIVKNALKEALLEVLSVGDLFDLIEEIKSKgkpvVIVFVGVNGTGKTTTIAKLAYYLK 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 267 AKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVR---DEAAMT-RALSYFKeeAR-VDYILIDTAGKNYRTSETVEE 341
Cdd:PRK14974 166 KNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKygaDPAAVAyDAIEHAK--ARgIDVVLIDTAGRMHTDANLMDE 243
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488114827 342 MIETMGQVEPDYICLTLSAsMKSKDMIEIITNF-KDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQD 415
Cdd:PRK14974 244 LKKIVRVTKPDLVIFVGDA-LAGNDAVEQAREFnEAVGIDGVILTKVDADAKGGAALSIAYVIGKPILFLGVGQG 317
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
244-414 |
1.30e-17 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 80.69 E-value: 1.30e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 244 IALIGPTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVR---DEAAMT-RALSYFKEEA 319
Cdd:cd17874 3 ILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNegaDPAAVAfDAIQAAKARG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 320 rVDYILIDTAGKNYRTSETVEEM------IETMGQVEPDYICLTLSASMkSKDMIEIITNFKD-IHIDGIVFTKFDETAS 392
Cdd:cd17874 83 -IDVVLIDTAGRLHTKKNLMEELkkikrvIKKKDPEAPHEVLLVLDATT-GQNALEQAKEFNEaVGLTGIILTKLDGTAK 160
|
170 180
....*....|....*....|..
gi 488114827 393 SGELLKIPAVSSAPIVLMTDGQ 414
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGE 182
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
242-428 |
1.31e-16 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 77.62 E-value: 1.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 242 QTIALIGPTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRDEA----AMTRALSYFKE 317
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKdpvkIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 318 EaRVDYILIDTAGKNYRTSETVEEMIETMGQVEPDYICLTLSASMKSKDMIEiITNFKD-IHIDGIVFTKFDETASSGEL 396
Cdd:cd17875 81 E-KFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQ-AKAFKEaVDIGSVIITKLDGHAKGGGA 158
|
170 180 190
....*....|....*....|....*....|..
gi 488114827 397 LKIPAVSSAPIvlmtdgqdvkqhIHIATAEHL 428
Cdd:cd17875 159 LSAVAATGAPI------------IFIGTGEHI 178
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
242-407 |
8.08e-15 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 75.83 E-value: 8.08e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 242 QTIALIGPTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRDE----AAMTRALSYFKE 317
Cdd:COG0541 101 TVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFPEEDGkdpvDIAKRALEYAKK 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 318 EARvDYILIDTAGknyRTSETvEEMIETMGQ----VEPDYICLTLSAsMKSKDMIEIITNFKD-IHIDGIVFTKFDETAS 392
Cdd:COG0541 181 NGY-DVVIVDTAG---RLHID-EELMDELKAikaaVNPDETLLVVDA-MTGQDAVNVAKAFNEaLGLTGVILTKLDGDAR 254
|
170
....*....|....*
gi 488114827 393 SGELLKIPAVSSAPI 407
Cdd:COG0541 255 GGAALSIRAVTGKPI 269
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
243-414 |
2.52e-12 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 65.71 E-value: 2.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 243 TIALIGPTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAV---RDEAAMTRALSYFKEEA 319
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKgygKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 320 RVDYILIDTAGKNYRTSETVEEMIETMGQVEPDYIcLTLSASMKSKDMIEIITNF----------KDIH-IDGIVFTKFD 388
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLV-LFVGEALVGNDAVDQLKKFnqaladyspsDNPRlIDGIVLTKFD 160
|
170 180
....*....|....*....|....*...
gi 488114827 389 eTASS--GELLKIPAVSSAPIVLMTDGQ 414
Cdd:cd17876 161 -TIDDkvGAALSMVYATGQPIVFVGTGQ 187
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
202-400 |
9.41e-10 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 59.27 E-value: 9.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 202 EKLKVKFENATMITEEEVIGYILEDMRSHFNTE----NVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHAKRKTVGFITT 277
Cdd:COG0552 57 EELRERVKRKKLKDPEELKEALKEELLEILDPVdkplAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAG 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 278 DHSRIGTVQQLQDYVKTIGSEVIAVR---DEAA-MTRALSYFKEEaRVDYILIDTAG-------------KNYRTSETVE 340
Cdd:COG0552 137 DTFRAAAIEQLEVWGERVGVPVIAQKegaDPAAvAFDAIQAAKAR-GADVVIIDTAGrlhnkknlmeelkKIKRVIKKLD 215
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488114827 341 EmietmgqVEPDYICLTLSASMkSKDMIEIITNFKD-IHIDGIVFTKFDETASSG------ELLKIP 400
Cdd:COG0552 216 P-------DAPHEVLLVLDATT-GQNALSQAKVFNEaVGVTGIVLTKLDGTAKGGvvlaiaDELGIP 274
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
244-416 |
1.37e-09 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 59.85 E-value: 1.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 244 IALIGPTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRDEA----AMTRALSYFKEEa 319
Cdd:TIGR01425 103 IMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYEESdpvkIASEGVEKFRKE- 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 320 RVDYILIDTAGKNYRTSETVEEMIETMGQVEPDYICLTLSASMKSKDMIEiITNFKD-IHIDGIVFTKFDETASSGELLK 398
Cdd:TIGR01425 182 KFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQ-AKAFKDsVEVGSVIITKLDGHAKGGGALS 260
|
170
....*....|....*...
gi 488114827 399 IPAVSSAPIVLMTDGQDV 416
Cdd:TIGR01425 261 AVAATKSPIIFIGTGEHV 278
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
205-400 |
3.81e-09 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 57.80 E-value: 3.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 205 KVKFENATmiTEEEVIGYILEDMRSHFNTE----NVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHAKRKTVGFITTDHS 280
Cdd:PRK10416 76 RVKRKNLK--DPEELKELLKEELAEILEPVekplNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 281 RIGTVQQLQDYVKTIGSEVIAVRDEA--------AMTRALSyfkeeARVDYILIDTAG-----KNYrtsetVEE---MIE 344
Cdd:PRK10416 154 RAAAIEQLQVWGERVGVPVIAQKEGAdpasvafdAIQAAKA-----RGIDVLIIDTAGrlhnkTNL-----MEElkkIKR 223
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488114827 345 TMGQV---EPDYICLTLSASmkskdmieiiT--N-------FKD-IHIDGIVFTKFDETASSG------ELLKIP 400
Cdd:PRK10416 224 VIKKAdpdAPHEVLLVLDAT----------TgqNalsqakaFHEaVGLTGIILTKLDGTAKGGvvfaiaDELGIP 288
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
242-389 |
6.88e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 54.30 E-value: 6.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 242 QTIALIGPTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRDEAAMTRALSyfkEEARV 321
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA---RKLKP 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488114827 322 DYILIDTAGKNYRTSETVEEMIETMGQVepdyicLTLSASMKSKDMIeIITNFKDIHIDGIVFTKFDE 389
Cdd:smart00382 80 DVLILDEITSLLDAEQEALLLLLEELRL------LLLLKSEKNLTVI-LTTNDEKDLGPALLRRRFDR 140
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
244-329 |
1.26e-04 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 41.56 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 244 IALIGPTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSriGTVQQL-QDYVKTIGSEVIAVRDEAAMTRAL-SYFKEEARV 321
Cdd:pfam13401 8 LVLTGESGTGKTTLLRRLLEQLPEVRDSVVFVDLPSG--TSPKDLlRALLRALGLPLSGRLSKEELLAALqQLLLALAVA 85
|
....*...
gi 488114827 322 DYILIDTA 329
Cdd:pfam13401 86 VVLIIDEA 93
|
|
| arsen_driv_ArsA |
TIGR04291 |
arsenical pump-driving ATPase; The broader family (TIGR00345) to which the current family ... |
239-356 |
1.30e-04 |
|
arsenical pump-driving ATPase; The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite).
Pssm-ID: 275109 [Multi-domain] Cd Length: 566 Bit Score: 44.31 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHAKRKTVGFITTD---H--------------SRIGTVQQLQDYVK----TIGS 297
Cdd:TIGR04291 319 SEKGLIMTMGKGGVGKTTVAAAIAVRLANKGLDVHLTTSDpaaHlsvtltgslnnlqvSRIDPKQETERYRQevlaTKGK 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 298 EVIA-------------VRDEAAMTRALSYFKEEARVDYILIDTAgknyRTSETV----------EEMIETMGQVEPDYI 354
Cdd:TIGR04291 399 ELDEdgkayleedlrspCTEEIAVFQAFSRIIREAGDRFVVMDTA----PTGHTLllldatgayhREVERKMGDTPEHVT 474
|
..
gi 488114827 355 CL 356
Cdd:TIGR04291 475 TP 476
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
244-346 |
5.37e-04 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 40.21 E-value: 5.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488114827 244 IALIGPTGVGKTTTLAKMAWQFHAKRKTvgFITTDHSRIgtvqqlqdYVKTIGSEVIAVRDEAAMTRAlsyfKEEARVDY 323
Cdd:cd00009 22 LLLYGPPGTGKTTLARAIANELFRPGAP--FLYLNASDL--------LEGLVVAELFGHFLVRLLFEL----AEKAKPGV 87
|
90 100
....*....|....*....|....
gi 488114827 324 ILIDTAGKNYR-TSETVEEMIETM 346
Cdd:cd00009 88 LFIDEIDSLSRgAQNALLRVLETL 111
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
242-285 |
3.83e-03 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 39.56 E-value: 3.83e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 488114827 242 QTIALIGPTGVGKTTTLAKMAWQFHAkrkTVGFITTDHSRIGTV 285
Cdd:PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVFDP---QSGRILIDGTDIRTV 402
|
|
| |
