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Conserved domains on  [gi|487749250|ref|WP_001831241|]
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MULTISPECIES: YozE family protein [Staphylococcus]

Protein Classification

YozE family protein( domain architecture ID 10014320)

uncharacterized protein similar to Bacillus subtilis YozE, containing a four-helix motif that is similar to the sterile alpha motif (SAM) domain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13672 PRK13672
hypothetical protein; Provisional
 3-71 3.15e-28

hypothetical protein; Provisional


:

Pssm-ID: 184229  Cd Length: 71  Bit Score: 96.10  E-value: 3.15e-28
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 487749250  3 KNYSFYQFIMTVRGRK--DDKGVFAEQIFEDLAFPKHEDDFNTLSEYIETHSEFTLPMSVFDDLYDDYTEW 71
Cdd:PRK13672  1 MRKSFYHYLMTQRNPKsnDPKAILANNAFDDLSFPKQSDDFDELSRYLELNASYLFSMSIFDEAWEEYLEH 71
 
Name Accession Description Interval E-value
PRK13672 PRK13672
hypothetical protein; Provisional
 3-71 3.15e-28

hypothetical protein; Provisional


Pssm-ID: 184229  Cd Length: 71  Bit Score: 96.10  E-value: 3.15e-28
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 487749250  3 KNYSFYQFIMTVRGRK--DDKGVFAEQIFEDLAFPKHEDDFNTLSEYIETHSEFTLPMSVFDDLYDDYTEW 71
Cdd:PRK13672  1 MRKSFYHYLMTQRNPKsnDPKAILANNAFDDLSFPKQSDDFDELSRYLELNASYLFSMSIFDEAWEEYLEH 71
YozE COG4479
Uncharacterized conserved protein YozE, UPF0346 family [Function unknown];
4-71 6.44e-28

Uncharacterized conserved protein YozE, UPF0346 family [Function unknown];


Pssm-ID: 443576  Cd Length: 70  Bit Score: 95.35  E-value: 6.44e-28
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487749250  4 NYSFYQFIMTVRG--RKDDKGVFAEQIFEDLAFPKHEDDFNTLSEYIETHSEFTLPMSVFDDLYDDYTEW 71
Cdd:COG4479   1 RRSFYQYLMTYRGpkKKDPKSDFANDAFLDHSFPKQSDDYDELSDYLELNGDYLGALSVFDELWEEYLER 70
YozE_SAM_like pfam06855
YozE SAM-like fold; YozE-like is a family of Firmicute proteins that carries a four-helix ...
 7-70 4.74e-19

YozE SAM-like fold; YozE-like is a family of Firmicute proteins that carries a four-helix motif similar to sterile alpha motif (SAM) domains. The family is suggested to fall into two subfamilies, possibly with differing functions based on the different surface charges on the three structural representatives, YozE MW0776 and MW1311. What this function is is not yet known although it is likely to involve binding to DNA.


Pssm-ID: 429156  Cd Length: 65  Bit Score: 72.63  E-value: 4.74e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 487749250   7 FYQFIMTVRG-RKDDKGVFAEQIFEDLAFPKHEDDFNTLSEYIETHSEFTLPMSVFDDLYDDYTE 70
Cdd:pfam06855  1 FYQFLMTFRGpDNDPVGDFANNAFKDHSFPKQSTDYDEISDYLELNGPYLSSMEIFDEAWDLYLE 65
 
Name Accession Description Interval E-value
PRK13672 PRK13672
hypothetical protein; Provisional
 3-71 3.15e-28

hypothetical protein; Provisional


Pssm-ID: 184229  Cd Length: 71  Bit Score: 96.10  E-value: 3.15e-28
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 487749250  3 KNYSFYQFIMTVRGRK--DDKGVFAEQIFEDLAFPKHEDDFNTLSEYIETHSEFTLPMSVFDDLYDDYTEW 71
Cdd:PRK13672  1 MRKSFYHYLMTQRNPKsnDPKAILANNAFDDLSFPKQSDDFDELSRYLELNASYLFSMSIFDEAWEEYLEH 71
YozE COG4479
Uncharacterized conserved protein YozE, UPF0346 family [Function unknown];
4-71 6.44e-28

Uncharacterized conserved protein YozE, UPF0346 family [Function unknown];


Pssm-ID: 443576  Cd Length: 70  Bit Score: 95.35  E-value: 6.44e-28
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487749250  4 NYSFYQFIMTVRG--RKDDKGVFAEQIFEDLAFPKHEDDFNTLSEYIETHSEFTLPMSVFDDLYDDYTEW 71
Cdd:COG4479   1 RRSFYQYLMTYRGpkKKDPKSDFANDAFLDHSFPKQSDDYDELSDYLELNGDYLGALSVFDELWEEYLER 70
YozE_SAM_like pfam06855
YozE SAM-like fold; YozE-like is a family of Firmicute proteins that carries a four-helix ...
 7-70 4.74e-19

YozE SAM-like fold; YozE-like is a family of Firmicute proteins that carries a four-helix motif similar to sterile alpha motif (SAM) domains. The family is suggested to fall into two subfamilies, possibly with differing functions based on the different surface charges on the three structural representatives, YozE MW0776 and MW1311. What this function is is not yet known although it is likely to involve binding to DNA.


Pssm-ID: 429156  Cd Length: 65  Bit Score: 72.63  E-value: 4.74e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 487749250   7 FYQFIMTVRG-RKDDKGVFAEQIFEDLAFPKHEDDFNTLSEYIETHSEFTLPMSVFDDLYDDYTE 70
Cdd:pfam06855  1 FYQFLMTFRGpDNDPVGDFANNAFKDHSFPKQSTDYDEISDYLELNGPYLSSMEIFDEAWDLYLE 65
MAT1 pfam06391
CDK-activating kinase assembly factor MAT1; MAT1 is an assembly/targeting factor for ...
 21-47 7.80e-03

CDK-activating kinase assembly factor MAT1; MAT1 is an assembly/targeting factor for cyclin-dependent kinase-activating kinase (CAK), which interacts with the transcription factor TFIIH. The domain found to the N-terminal side of this domain is a C3HC4 RING finger.


Pssm-ID: 461894 [Multi-domain]  Cd Length: 202  Bit Score: 32.98  E-value: 7.80e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 487749250   21 KGVFAEQIFEDLA--------------FPKHEDDFNTLSEY 47
Cdd:pfam06391   3 KNKFRVQIFEDPGvekevdirkrvlkiFNKTEEDFPSLREY 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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