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Conserved domains on  [gi|486145610|ref|WP_001517193|]
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MULTISPECIES: DUF2556 family protein [Escherichia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2556 super family cl12419
Protein of unknown function (DUF2556); This family of proteins with unknown function appears ...
 1-53 8.07e-17

Protein of unknown function (DUF2556); This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.


The actual alignment was detected with superfamily member pfam10831:

Pssm-ID: 431515  Cd Length: 53  Bit Score: 66.18  E-value: 8.07e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 486145610   1 MIRKYWWLVVFAVSVFLFDTLLMQWIELLATETDKCRNMNSVNPLKLVNCDEL 53
Cdd:pfam10831  1 MLRKYGWLIAFALLMFLFEGIVMHLIEVLTTEYDKCRNMDSVNPLKLVKCSDL 53
 
Name Accession Description Interval E-value
DUF2556 pfam10831
Protein of unknown function (DUF2556); This family of proteins with unknown function appears ...
 1-53 8.07e-17

Protein of unknown function (DUF2556); This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.


Pssm-ID: 431515  Cd Length: 53  Bit Score: 66.18  E-value: 8.07e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 486145610   1 MIRKYWWLVVFAVSVFLFDTLLMQWIELLATETDKCRNMNSVNPLKLVNCDEL 53
Cdd:pfam10831  1 MLRKYGWLIAFALLMFLFEGIVMHLIEVLTTEYDKCRNMDSVNPLKLVKCSDL 53
 
Name Accession Description Interval E-value
DUF2556 pfam10831
Protein of unknown function (DUF2556); This family of proteins with unknown function appears ...
 1-53 8.07e-17

Protein of unknown function (DUF2556); This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.


Pssm-ID: 431515  Cd Length: 53  Bit Score: 66.18  E-value: 8.07e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 486145610   1 MIRKYWWLVVFAVSVFLFDTLLMQWIELLATETDKCRNMNSVNPLKLVNCDEL 53
Cdd:pfam10831  1 MLRKYGWLIAFALLMFLFEGIVMHLIEVLTTEYDKCRNMDSVNPLKLVKCSDL 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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