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Conserved domains on  [gi|485670982|ref|WP_001311867|]
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MULTISPECIES: type-F conjugative transfer system pilin assembly protein TrbC [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TrbC_Ftype super family cl09883
Type-F conjugative transfer system pilin assembly protein; This entry represents TrbC, a ...
 1-105 1.05e-79

Type-F conjugative transfer system pilin assembly protein; This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins is heterogeneous.


The actual alignment was detected with superfamily member PRK13730:

Pssm-ID: 447846  Cd Length: 212  Bit Score: 232.47  E-value: 1.05e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485670982   1 MLGETRHYGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRSVPALVVFCSQGYDIIRGNLRVGQAL 80
Cdd:PRK13730 108 MLGETRHYGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRSVPALVVFCSQGYDIIRGNLRVGQAL 187

                         90       100
                 ....*....|....*....|....*
gi 485670982  81 EKVAATGDCRQVAHDLLAGKGDSGK 105
Cdd:PRK13730 188 EKVAATGDCRQVAHDLLAGKGDSGK 212
 
Name Accession Description Interval E-value
PRK13730 PRK13730
conjugal transfer pilus assembly protein TrbC; Provisional
 1-105 1.05e-79

conjugal transfer pilus assembly protein TrbC; Provisional


Pssm-ID: 184282  Cd Length: 212  Bit Score: 232.47  E-value: 1.05e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485670982   1 MLGETRHYGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRSVPALVVFCSQGYDIIRGNLRVGQAL 80
Cdd:PRK13730 108 MLGETRHYGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRSVPALVVFCSQGYDIIRGNLRVGQAL 187

                         90       100
                 ....*....|....*....|....*
gi 485670982  81 EKVAATGDCRQVAHDLLAGKGDSGK 105
Cdd:PRK13730 188 EKVAATGDCRQVAHDLLAGKGDSGK 212
TrbC_Ftype TIGR02742
type-F conjugative transfer system pilin assembly protein TrbC; This protein is an essential ...
 1-99 6.08e-37

type-F conjugative transfer system pilin assembly protein TrbC; This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.


Pssm-ID: 131789  Cd Length: 130  Bit Score: 121.34  E-value: 6.08e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485670982    1 MLGETRHYGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRSVPALVVFCSQG------------YD 68
Cdd:TIGR02742  17 LLDQAEALGAPLVIRGLLDNGFKATATRIQSLIKDGGKSGVQIDPQWFKQFDITAVPAFVVVKDGLaclpeqpcpesdYD 96

                          90       100       110
                  ....*....|....*....|....*....|..
gi 485670982   69 IIRGNLRVGQALEKVAATGDCRQ-VAHDLLAG 99
Cdd:TIGR02742  97 VVYGNVSLKGALEKMAQDGDSPQiVAQQLLER 128
TrbC_Ftype pfam09673
Type-F conjugative transfer system pilin assembly protein; This entry represents TrbC, a ...
 14-82 1.60e-14

Type-F conjugative transfer system pilin assembly protein; This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins is heterogeneous.


Pssm-ID: 430744  Cd Length: 112  Bit Score: 63.81  E-value: 1.60e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485670982   14 LRGMVNNDLKTTAEAVLSLVKDGATD-GVQIDPTLFSQYGIRSVPALVV--------------FCSQGYDIIRGNLRVGQ 78
Cdd:pfam09673  28 FRGFPGGSLKPTAKALAALLREDMRGvGVIIDPLLFRQFGITRVPAFVLapgdpapcdcgndcAAPDPYDVVYGDVSLEY 107


                  ....
gi 485670982   79 ALEK 82
Cdd:pfam09673 108 ALEK 111
 
Name Accession Description Interval E-value
PRK13730 PRK13730
conjugal transfer pilus assembly protein TrbC; Provisional
 1-105 1.05e-79

conjugal transfer pilus assembly protein TrbC; Provisional


Pssm-ID: 184282  Cd Length: 212  Bit Score: 232.47  E-value: 1.05e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485670982   1 MLGETRHYGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRSVPALVVFCSQGYDIIRGNLRVGQAL 80
Cdd:PRK13730 108 MLGETRHYGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRSVPALVVFCSQGYDIIRGNLRVGQAL 187

                         90       100
                 ....*....|....*....|....*
gi 485670982  81 EKVAATGDCRQVAHDLLAGKGDSGK 105
Cdd:PRK13730 188 EKVAATGDCRQVAHDLLAGKGDSGK 212
TrbC_Ftype TIGR02742
type-F conjugative transfer system pilin assembly protein TrbC; This protein is an essential ...
 1-99 6.08e-37

type-F conjugative transfer system pilin assembly protein TrbC; This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.


Pssm-ID: 131789  Cd Length: 130  Bit Score: 121.34  E-value: 6.08e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485670982    1 MLGETRHYGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRSVPALVVFCSQG------------YD 68
Cdd:TIGR02742  17 LLDQAEALGAPLVIRGLLDNGFKATATRIQSLIKDGGKSGVQIDPQWFKQFDITAVPAFVVVKDGLaclpeqpcpesdYD 96

                          90       100       110
                  ....*....|....*....|....*....|..
gi 485670982   69 IIRGNLRVGQALEKVAATGDCRQ-VAHDLLAG 99
Cdd:TIGR02742  97 VVYGNVSLKGALEKMAQDGDSPQiVAQQLLER 128
TrbC_Ftype pfam09673
Type-F conjugative transfer system pilin assembly protein; This entry represents TrbC, a ...
 14-82 1.60e-14

Type-F conjugative transfer system pilin assembly protein; This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins is heterogeneous.


Pssm-ID: 430744  Cd Length: 112  Bit Score: 63.81  E-value: 1.60e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485670982   14 LRGMVNNDLKTTAEAVLSLVKDGATD-GVQIDPTLFSQYGIRSVPALVV--------------FCSQGYDIIRGNLRVGQ 78
Cdd:pfam09673  28 FRGFPGGSLKPTAKALAALLREDMRGvGVIIDPLLFRQFGITRVPAFVLapgdpapcdcgndcAAPDPYDVVYGDVSLEY 107


                  ....
gi 485670982   79 ALEK 82
Cdd:pfam09673 108 ALEK 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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