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Conserved domains on  [gi|447205891|ref|WP_001283147|]
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MULTISPECIES: DNA breaking-rejoining protein [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_attach super family cl05094
Phage Head-Tail Attachment; The phage head-tail attachment protein is required for the joining ...
 2-88 1.82e-14

Phage Head-Tail Attachment; The phage head-tail attachment protein is required for the joining of phage heads and tails at the last step of morphogenesis.


The actual alignment was detected with superfamily member pfam13856:

Pssm-ID: 446606  Cd Length: 98  Bit Score: 62.74  E-value: 1.82e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447205891   2 SDPFSRLAARMDAITVRKMGKTASINDVDMAVIPGETLAEL--------NALSGPAVSLVVF-SSGYRPRRGDRVVYDGQ 72
Cdd:pfam13856  1 ADLFDGAFAKADALIAERFGSEVLINGKDCIATEDDALAELeglhvsdeQALEGNGKNLTLFrGNGIKPRLDDKVVLGEK 80

                         90
                 ....*....|....*.
gi 447205891  73 QWTVTRHERFNGKPMI 88
Cdd:pfam13856 81 EFLVKRIHRFDGKIQL 96
 
Name Accession Description Interval E-value
Gifsy-2 pfam13856
ATP-binding sugar transporter from pro-phage; Members of this short family are putative ...
 2-88 1.82e-14

ATP-binding sugar transporter from pro-phage; Members of this short family are putative ATP-binding sugar transporter-like protein.


Pssm-ID: 433529  Cd Length: 98  Bit Score: 62.74  E-value: 1.82e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447205891   2 SDPFSRLAARMDAITVRKMGKTASINDVDMAVIPGETLAEL--------NALSGPAVSLVVF-SSGYRPRRGDRVVYDGQ 72
Cdd:pfam13856  1 ADLFDGAFAKADALIAERFGSEVLINGKDCIATEDDALAELeglhvsdeQALEGNGKNLTLFrGNGIKPRLDDKVVLGEK 80

                         90
                 ....*....|....*.
gi 447205891  73 QWTVTRHERFNGKPMI 88
Cdd:pfam13856 81 EFLVKRIHRFDGKIQL 96
 
Name Accession Description Interval E-value
Gifsy-2 pfam13856
ATP-binding sugar transporter from pro-phage; Members of this short family are putative ...
 2-88 1.82e-14

ATP-binding sugar transporter from pro-phage; Members of this short family are putative ATP-binding sugar transporter-like protein.


Pssm-ID: 433529  Cd Length: 98  Bit Score: 62.74  E-value: 1.82e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447205891   2 SDPFSRLAARMDAITVRKMGKTASINDVDMAVIPGETLAEL--------NALSGPAVSLVVF-SSGYRPRRGDRVVYDGQ 72
Cdd:pfam13856  1 ADLFDGAFAKADALIAERFGSEVLINGKDCIATEDDALAELeglhvsdeQALEGNGKNLTLFrGNGIKPRLDDKVVLGEK 80

                         90
                 ....*....|....*.
gi 447205891  73 QWTVTRHERFNGKPMI 88
Cdd:pfam13856 81 EFLVKRIHRFDGKIQL 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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