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Conserved domains on  [gi|447198860|ref|WP_001276116|]
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MULTISPECIES: single-stranded DNA-binding protein [Enterobacteriaceae]

Protein Classification

single-stranded DNA-binding protein( domain architecture ID 10793852)

single-stranded DNA (ssDNA)-binding protein plays a key role in DNA replication, recombination, and repair

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13732 PRK13732
single-stranded DNA-binding protein; Provisional
 1-175 2.70e-118

single-stranded DNA-binding protein; Provisional


:

Pssm-ID: 184284 [Multi-domain]  Cd Length: 175  Bit Score: 331.70  E-value: 2.70e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   1 MSARGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYI 80
Cdd:PRK13732   1 MAVRGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860  81 EGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGSAPQQNAQAQPKPQQNGQPQSADATKKGGVKTKGRGRKAAQPEPQPQ 160
Cdd:PRK13732  81 EGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGRAPQQNAQPQPGPQQNGQPQSADATKKGGAKTKGRGRKAAQPEPQPQ 160

                        170
                 ....*....|....*
gi 447198860 161 PPEGEDYGFSDDIPF 175
Cdd:PRK13732 161 PPEGEDYGFSDDIPF 175
 
Name Accession Description Interval E-value
PRK13732 PRK13732
single-stranded DNA-binding protein; Provisional
 1-175 2.70e-118

single-stranded DNA-binding protein; Provisional


Pssm-ID: 184284 [Multi-domain]  Cd Length: 175  Bit Score: 331.70  E-value: 2.70e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   1 MSARGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYI 80
Cdd:PRK13732   1 MAVRGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860  81 EGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGSAPQQNAQAQPKPQQNGQPQSADATKKGGVKTKGRGRKAAQPEPQPQ 160
Cdd:PRK13732  81 EGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGRAPQQNAQPQPGPQQNGQPQSADATKKGGAKTKGRGRKAAQPEPQPQ 160

                        170
                 ....*....|....*
gi 447198860 161 PPEGEDYGFSDDIPF 175
Cdd:PRK13732 161 PPEGEDYGFSDDIPF 175
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 3-175 1.15e-60

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 185.70  E-value: 1.15e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860    3 ARGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQtGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEG 82
Cdd:TIGR00621   1 MRMVNKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQD-GEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   83 QLRTRSWED-NGITRYVTEILVKTTGTMQMLGsAPQQNAQAQPKPQQNGQPQSADATKKGGvKTKGRGRKAAqpepqpqP 161
Cdd:TIGR00621  80 RLRTRKWEDqNGQKRSKTEIIADNVQLLDLLG-ARAQGGEFSGGGGSGNRPQGGQEQSATG-KDPAQSAPQS-------G 150

                         170
                  ....*....|....
gi 447198860  162 PEGEDYGFSDDIPF 175
Cdd:TIGR00621 151 SADPIDGDDDEIPF 164
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
6-122 1.02e-53

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 166.17  E-value: 1.02e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   6 INKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDkQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85
Cdd:COG0629    1 MNKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKD-QDGEWKDETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLR 79

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 447198860  86 TRSWED-NGITRYVTEILVKttgTMQMLGSAPQQNAQA 122
Cdd:COG0629   80 TRSWEDkDGQKRYTTEVVAD---EIQFLGSRPSGGGGG 114
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 6-112 8.99e-44

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 140.45  E-value: 8.99e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860    6 INKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEmrEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKDRGEGD--EETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQ 78

                          90       100
                  ....*....|....*....|....*...
gi 447198860   86 TRSWED-NGITRYVTEILVKttgTMQML 112
Cdd:pfam00436  79 TRKYEDqEGQKRYVTEIVAD---EVQFL 103
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 9-103 1.96e-39

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 129.27  E-value: 1.96e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   9 VILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKqtGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRTRS 88
Cdd:cd04496    1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDR--DEEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRS 78

                         90
                 ....*....|....*.
gi 447198860  89 WED-NGITRYVTEILV 103
Cdd:cd04496   79 WEDkDGQKRYGTEVVA 94
 
Name Accession Description Interval E-value
PRK13732 PRK13732
single-stranded DNA-binding protein; Provisional
 1-175 2.70e-118

single-stranded DNA-binding protein; Provisional


Pssm-ID: 184284 [Multi-domain]  Cd Length: 175  Bit Score: 331.70  E-value: 2.70e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   1 MSARGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYI 80
Cdd:PRK13732   1 MAVRGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860  81 EGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGSAPQQNAQAQPKPQQNGQPQSADATKKGGVKTKGRGRKAAQPEPQPQ 160
Cdd:PRK13732  81 EGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGRAPQQNAQPQPGPQQNGQPQSADATKKGGAKTKGRGRKAAQPEPQPQ 160

                        170
                 ....*....|....*
gi 447198860 161 PPEGEDYGFSDDIPF 175
Cdd:PRK13732 161 PPEGEDYGFSDDIPF 175
PRK09010 PRK09010
single-stranded DNA-binding protein; Provisional
 1-175 2.83e-74

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236362 [Multi-domain]  Cd Length: 177  Bit Score: 220.49  E-value: 2.83e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   1 MSARGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYI 80
Cdd:PRK09010   1 MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860  81 EGQLRTRSWED-NGITRYVTEILVKTTGTMQMLGSAPQQNAQAQPKPQQN-----GQPQSAdatkKGGVKTKGRGRKAAQ 154
Cdd:PRK09010  81 EGQLRTRKWTDqSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGQqqggwGQPQQP----QGGNQFSGGAQSRPQ 156

                        170       180
                 ....*....|....*....|.
gi 447198860 155 PEPQPQPPEGEDYGFSDDIPF 175
Cdd:PRK09010 157 QSAPAAPSNEPPMDFDDDIPF 177
PRK05733 PRK05733
single-stranded DNA-binding protein; Provisional
 3-175 2.98e-69

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235585 [Multi-domain]  Cd Length: 172  Bit Score: 207.47  E-value: 2.98e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   3 ARGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEG 82
Cdd:PRK05733   2 ARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQVYIEG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860  83 QLRTRSWEDNGITRYVTEILVKTTGTMQMLGSAPQ----------QNAQAQPKPQQNGQPQSADatkkggvktkgrgRKA 152
Cdd:PRK05733  82 KLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQgddqggqgggNYNQSAPRQQAQRPQQAAQ-------------QQS 148

                        170       180
                 ....*....|....*....|....
gi 447198860 153 AQPEPQPQPPEGEDY-GFSDDIPF 175
Cdd:PRK05733 149 RPAPQQPAPQPAADFdSFDDDIPF 172
PRK06863 PRK06863
single-stranded DNA-binding protein; Provisional
 5-175 1.13e-60

single-stranded DNA-binding protein; Provisional


Pssm-ID: 136097 [Multi-domain]  Cd Length: 168  Bit Score: 185.94  E-value: 1.13e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   5 GINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQL 84
Cdd:PRK06863   3 GINKVIIVGHLGNDPEIRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSQVYVEGRL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860  85 RTRSWED-NGITRYVTEIlvkTTGTMQMLGSAPQQNA----QAQPKPQQN-GQPQSADATKKGGVKTKGRGRKAAQPEPQ 158
Cdd:PRK06863  83 KTRKWQDqNGQDRYTTEI---QGDVLQMLGGRNQRNAggygNSGPAPQQSyQAGQTNNGNSQQASRPAPQQAAPQAEPPM 159

                        170
                 ....*....|....*..
gi 447198860 159 PqppegedyGFSDDIPF 175
Cdd:PRK06863 160 D--------GFDDDIPF 168
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 3-175 1.15e-60

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 185.70  E-value: 1.15e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860    3 ARGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQtGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEG 82
Cdd:TIGR00621   1 MRMVNKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQD-GEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   83 QLRTRSWED-NGITRYVTEILVKTTGTMQMLGsAPQQNAQAQPKPQQNGQPQSADATKKGGvKTKGRGRKAAqpepqpqP 161
Cdd:TIGR00621  80 RLRTRKWEDqNGQKRSKTEIIADNVQLLDLLG-ARAQGGEFSGGGGSGNRPQGGQEQSATG-KDPAQSAPQS-------G 150

                         170
                  ....*....|....
gi 447198860  162 PEGEDYGFSDDIPF 175
Cdd:TIGR00621 151 SADPIDGDDDEIPF 164
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
6-122 1.02e-53

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 166.17  E-value: 1.02e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   6 INKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDkQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85
Cdd:COG0629    1 MNKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKD-QDGEWKDETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLR 79

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 447198860  86 TRSWED-NGITRYVTEILVKttgTMQMLGSAPQQNAQA 122
Cdd:COG0629   80 TRSWEDkDGQKRYTTEVVAD---EIQFLGSRPSGGGGG 114
PRK06958 PRK06958
single-stranded DNA-binding protein; Provisional
 6-114 6.38e-47

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180777 [Multi-domain]  Cd Length: 182  Bit Score: 151.10  E-value: 6.38e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   6 INKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85
Cdd:PRK06958   4 VNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGEFKEATEWHRVAFFGRLAEIVGEYLKKGSSVYIEGRIR 83

                         90       100       110
                 ....*....|....*....|....*....|
gi 447198860  86 TRSWED-NGITRYVTEILVKttgTMQMLGS 114
Cdd:PRK06958  84 TRKWQGqDGQDRYSTEIVAD---QMQMLGG 110
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 6-112 8.99e-44

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 140.45  E-value: 8.99e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860    6 INKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEmrEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKDRGEGD--EETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQ 78

                          90       100
                  ....*....|....*....|....*...
gi 447198860   86 TRSWED-NGITRYVTEILVKttgTMQML 112
Cdd:pfam00436  79 TRKYEDqEGQKRYVTEIVAD---EVQFL 103
PRK06341 PRK06341
single-stranded DNA-binding protein; Provisional
 3-175 1.17e-41

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235782 [Multi-domain]  Cd Length: 166  Bit Score: 137.24  E-value: 1.17e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   3 ARGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGK-LAEVAGEYLRKGAQVYIE 81
Cdd:PRK06341   2 AGSVNKVILIGNLGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHRVVIFNEgLCKVAEQYLKKGAKVYIE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860  82 GQLRTRSWED-NGITRYVTEILVKT-TGTMQMLGSapqqnaqaqpKPQQNGQPQSADATKKGGVKTKGRGRkAAQPEPQP 159
Cdd:PRK06341  82 GQLQTRKWTDqSGVERYSTEVVLQGfNSTLTMLDG----------RGEGGGGGGGGDDGGGGDFGSSGPSR-GGPRPASS 150

                        170
                 ....*....|....*.
gi 447198860 160 QPPEGEDYGFSDDIPF 175
Cdd:PRK06341 151 GGGGNFSRDMDDDIPF 166
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 9-103 1.96e-39

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 129.27  E-value: 1.96e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   9 VILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKqtGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRTRS 88
Cdd:cd04496    1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDR--DEEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRS 78

                         90
                 ....*....|....*.
gi 447198860  89 WED-NGITRYVTEILV 103
Cdd:cd04496   79 WEDkDGQKRYGTEVVA 94
PRK08763 PRK08763
single-stranded DNA-binding protein; Provisional
 3-135 2.68e-38

single-stranded DNA-binding protein; Provisional


Pssm-ID: 181549 [Multi-domain]  Cd Length: 164  Bit Score: 128.90  E-value: 2.68e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   3 ARGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQtGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEG 82
Cdd:PRK08763   2 ARGINKVILVGNLGNDPDIKYTQSGMTITRISLATTSVRKDRE-GNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 447198860  83 QLRTRSWEDN-GITRYVTEILVKttgTMQMLGSAPQ--------QNAQAQPKPQQNGQPQSA 135
Cdd:PRK08763  81 SIRYDKFTGQdGQERYVTEIVAD---EMQMLGGRGEggggggggIRPQRQPAPRQNNGQDYA 139
PRK06642 PRK06642
single-stranded DNA-binding protein; Provisional
 3-123 1.22e-36

single-stranded DNA-binding protein; Provisional


Pssm-ID: 135984  Cd Length: 152  Bit Score: 124.06  E-value: 1.22e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   3 ARGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGK-LAEVAGEYLRKGAQVYIE 81
Cdd:PRK06642   2 AGSLNKVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSERKERTEWHRVVIFSEgLVSVVERYVTKGSKLYIE 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 447198860  82 GQLRTRSWEDN-GITRYVTEILVKTTGTMQMLGSAPQQNAQAQ 123
Cdd:PRK06642  82 GSLQTRKWNDNsGQEKYTTEVVLQNFNSQLILLDSKNSNNHNQ 124
PRK08486 PRK08486
single-stranded DNA-binding protein; Provisional
 7-131 3.20e-30

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236275 [Multi-domain]  Cd Length: 182  Bit Score: 108.78  E-value: 3.20e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   7 NKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRdKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRT 86
Cdd:PRK08486   3 NKVILVGNLTRDVELRYLPSGSAIATIGLATSRRFK-KQDGEKGEEVCFIDIRLFGRTAEIANQYLSKGSKVLIEGRLTF 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 447198860  87 RSWED-NGITRYVTEILVKttgTMQMLGSAPQQNAQAQPKPQQNGQ 131
Cdd:PRK08486  82 ESWMDqNGQKRSKHTITAE---SMQMLDSKSDNPQANAMQDNSFHE 124
PRK07274 PRK07274
single-stranded DNA-binding protein; Provisional
 7-117 5.00e-21

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180914  Cd Length: 131  Bit Score: 83.27  E-value: 5.00e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   7 NKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDkQTGEmrEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRT 86
Cdd:PRK07274   3 NKVILIGRLTATPELVKTANDKSVARVTLAVNRRFKN-QNGE--READFINVVLWGKLAETLASYASKGSLISIDGELRT 79

                         90       100       110
                 ....*....|....*....|....*....|.
gi 447198860  87 RSWEDNGITRYVTEILVKttgTMQMLGSAPQ 117
Cdd:PRK07274  80 RKYEKDGQTHYVTEVLCQ---SFQLLESRAQ 107
PRK07459 PRK07459
single-stranded DNA-binding protein; Provisional
 5-126 6.47e-20

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180986  Cd Length: 121  Bit Score: 80.12  E-value: 6.47e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   5 GINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDkqtgemrEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQL 84
Cdd:PRK07459   2 SLNSVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRRSRD-------DEPDWFNLEIWGKTAQVAADYVKKGSLIGITGSL 74

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 447198860  85 RTRSWED--NGITRYVTEILVKttgTMQMLGSAPQQNAQAQPKP 126
Cdd:PRK07459  75 KFDRWTDrnTGEDRSKPVIRVD---RLELLGSKRDSEGNANPSN 115
PRK06751 PRK06751
single-stranded DNA-binding protein; Provisional
 6-130 4.09e-17

single-stranded DNA-binding protein; Provisional


Pssm-ID: 168659 [Multi-domain]  Cd Length: 173  Bit Score: 74.45  E-value: 4.09e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   6 INKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQtGEmrEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85
Cdd:PRK06751   2 MNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQ-GE--READFINCVIWRKQAENVANYLKKGSLAGVDGRLQ 78

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 447198860  86 TRSWE-DNGITRYVTEILVKTTGTMQMLGSAPQQNAQAQPKPQQNG 130
Cdd:PRK06751  79 TRNYEgQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAG 124
PRK07275 PRK07275
single-stranded DNA-binding protein; Provisional
 6-138 4.68e-15

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180915 [Multi-domain]  Cd Length: 162  Bit Score: 68.76  E-value: 4.68e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   6 INKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDkQTGEmREqTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85
Cdd:PRK07275   2 INNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKS-QNGE-RE-ADFINCVIWRQQAENLANWAKKGALIGVTGRIQ 78

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 447198860  86 TRSWEDNGITR-YVTEILVKttgTMQML--------GSAPQQNAQAQPKPQQNGQPQSADAT 138
Cdd:PRK07275  79 TRNYENQQGQRvYVTEVVAD---NFQMLesratregGSGGSYNGGFNNAPSANSYSAPAQQT 137
PRK06752 PRK06752
single-stranded DNA-binding protein; Validated
 6-105 1.83e-14

single-stranded DNA-binding protein; Validated


Pssm-ID: 168660  Cd Length: 112  Bit Score: 65.83  E-value: 1.83e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   6 INKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDkQTGEmrEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85
Cdd:PRK06752   2 MNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRN-SLGE--QQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIH 78

                         90       100
                 ....*....|....*....|.
gi 447198860  86 TRSWEDNGITR-YVTEILVKT 105
Cdd:PRK06752  79 TRNYEDDQGKRiYITEVVIES 99
PRK07772 PRK07772
single-stranded DNA-binding protein; Provisional
 11-108 3.43e-13

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236092 [Multi-domain]  Cd Length: 186  Bit Score: 64.28  E-value: 3.43e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860  11 LVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEMRE-QTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRTRSW 89
Cdd:PRK07772   9 VVGNLTADPELRFTPSGAAVANFTVASTPRTFDRQTNEWKDgEALFLRCSIWRQAAENVAESLTKGMRVIVTGRLKQRSY 88

                         90       100
                 ....*....|....*....|
gi 447198860  90 ED-NGITRYVTEILVKTTGT 108
Cdd:PRK07772  89 ETrEGEKRTVVELEVDEIGP 108
PRK06293 PRK06293
single-stranded DNA-binding protein; Provisional
 9-175 3.40e-09

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180517 [Multi-domain]  Cd Length: 161  Bit Score: 52.98  E-value: 3.40e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860   9 VILVGRLGNDPEVRYIPNGGAVANLQVATseswrdKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRTRS 88
Cdd:PRK06293   4 GYIVGRLGADPEERMTSKGKRVVVLRLGV------KSRVGSKDETVWCRCNIWGNRYDKMLPYLKKGSGVIVAGEMSPES 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860  89 WED-NGITRYVTEIlvkttgTMQMLGSAPQQNAQA--QPKPQQNGQPQSADATKKGGVKTKGRGRKAAQPEPQPQPPEGE 165
Cdd:PRK06293  78 YVDkDGSPQSSLVV------SVDTIKFSPFGRNEGsrQPSAGEDEGQQRGYDNVSIGFEGESLDTESALDKDMYAGYGQD 151

                        170
                 ....*....|
gi 447198860 166 DYGFSDDIPF 175
Cdd:PRK06293 152 QQYASEDVPF 161
PRK08182 PRK08182
single-stranded DNA-binding protein; Provisional
 13-140 2.11e-08

single-stranded DNA-binding protein; Provisional


Pssm-ID: 169261  Cd Length: 148  Bit Score: 50.45  E-value: 2.11e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860  13 GRLGNDPEVRYIPNGG----AVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRTRS 88
Cdd:PRK08182   9 GNIGSAPEYREFPNGNdeprRLLRLNVYFDNPVPTKDGEYEDRGGFWAPVELWHRDAEHWARLYQKGMRVLVEGRMERDE 88

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 447198860  89 WEDNGITRYVT--------EILVKTTGTMQMLGSAPQQNAQAQPKPQQNGQPQSADATKK 140
Cdd:PRK08182  89 WTDNEDNERVTfkvearrvGILPYRIESVTLSPKPAATEPEAEPKPQAAQESTAPKEPKR 148
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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