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Conserved domains on  [gi|447177000|ref|WP_001254256|]
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MULTISPECIES: NinE family protein [Gammaproteobacteria]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NinE super family cl29974
NINE Protein; This family consists of NINE proteins from several bacteriophages and from E. ...
 1-58 1.62e-23

NINE Protein; This family consists of NINE proteins from several bacteriophages and from E. coli.


The actual alignment was detected with superfamily member pfam05322:

Pssm-ID: 356850  Cd Length: 58  Bit Score: 83.27  E-value: 1.62e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 447177000   1 MRRQRRSITDIICENCKYLPTKRSRNKRKPIPKESDVKTFNYTAHLWDIRWLRHRARK 58
Cdd:pfam05322  1 MARQRRSITDIICENCKYLPTKRSRNKPKPIPKESDVKTFNYTAHLWDIRWLRHRARK 58
 
Name Accession Description Interval E-value
NinE pfam05322
NINE Protein; This family consists of NINE proteins from several bacteriophages and from E. ...
 1-58 1.62e-23

NINE Protein; This family consists of NINE proteins from several bacteriophages and from E. coli.


Pssm-ID: 283078  Cd Length: 58  Bit Score: 83.27  E-value: 1.62e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 447177000   1 MRRQRRSITDIICENCKYLPTKRSRNKRKPIPKESDVKTFNYTAHLWDIRWLRHRARK 58
Cdd:pfam05322  1 MARQRRSITDIICENCKYLPTKRSRNKPKPIPKESDVKTFNYTAHLWDIRWLRHRARK 58
PRK09689 PRK09689
prophage protein NinE; Provisional
 24-60 1.86e-05

prophage protein NinE; Provisional


Pssm-ID: 182029  Cd Length: 56  Bit Score: 37.65  E-value: 1.86e-05
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 447177000 24 SRNKRKPIPKESDVKTF-NYTAHLWDIRWLRHRARKTR 60
Cdd:PRK09689 18 NRRKRKPELKPSEIPTLlGYTASLVDKKWLRLAARRNH 55
 
Name Accession Description Interval E-value
NinE pfam05322
NINE Protein; This family consists of NINE proteins from several bacteriophages and from E. ...
 1-58 1.62e-23

NINE Protein; This family consists of NINE proteins from several bacteriophages and from E. coli.


Pssm-ID: 283078  Cd Length: 58  Bit Score: 83.27  E-value: 1.62e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 447177000   1 MRRQRRSITDIICENCKYLPTKRSRNKRKPIPKESDVKTFNYTAHLWDIRWLRHRARK 58
Cdd:pfam05322  1 MARQRRSITDIICENCKYLPTKRSRNKPKPIPKESDVKTFNYTAHLWDIRWLRHRARK 58
PRK09689 PRK09689
prophage protein NinE; Provisional
 24-60 1.86e-05

prophage protein NinE; Provisional


Pssm-ID: 182029  Cd Length: 56  Bit Score: 37.65  E-value: 1.86e-05
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 447177000 24 SRNKRKPIPKESDVKTF-NYTAHLWDIRWLRHRARKTR 60
Cdd:PRK09689 18 NRRKRKPELKPSEIPTLlGYTASLVDKKWLRLAARRNH 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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