MULTISPECIES: sigma-70 family RNA polymerase sigma factor [Salmonella]
List of domain hits
Name | Accession | Description | Interval | E-value | ||
RpoE super family | cl34313 | DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ... |
67-94 | 8.63e-04 | ||
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase The actual alignment was detected with superfamily member COG1595: Pssm-ID: 441203 [Multi-domain] Cd Length: 181 Bit Score: 36.13 E-value: 8.63e-04
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Name | Accession | Description | Interval | E-value | ||
RpoE | COG1595 | DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ... |
67-94 | 8.63e-04 | ||
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase Pssm-ID: 441203 [Multi-domain] Cd Length: 181 Bit Score: 36.13 E-value: 8.63e-04
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sigma70-ECF | TIGR02937 | RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the ... |
67-94 | 1.57e-03 | ||
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs. Pssm-ID: 274357 [Multi-domain] Cd Length: 158 Bit Score: 35.40 E-value: 1.57e-03
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Sigma70_r4_2 | pfam08281 | Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
67-94 | 2.05e-03 | ||
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Pssm-ID: 400535 [Multi-domain] Cd Length: 54 Bit Score: 33.20 E-value: 2.05e-03
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HTH_LUXR | smart00421 | helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon |
63-94 | 2.40e-03 | ||
helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon Pssm-ID: 197715 [Multi-domain] Cd Length: 58 Bit Score: 33.27 E-value: 2.40e-03
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Name | Accession | Description | Interval | E-value | ||
RpoE | COG1595 | DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ... |
67-94 | 8.63e-04 | ||
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase Pssm-ID: 441203 [Multi-domain] Cd Length: 181 Bit Score: 36.13 E-value: 8.63e-04
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sigma70-ECF | TIGR02937 | RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the ... |
67-94 | 1.57e-03 | ||
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs. Pssm-ID: 274357 [Multi-domain] Cd Length: 158 Bit Score: 35.40 E-value: 1.57e-03
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CsgD | COG2771 | DNA-binding transcriptional regulator, CsgD family [Transcription]; |
63-94 | 2.03e-03 | ||
DNA-binding transcriptional regulator, CsgD family [Transcription]; Pssm-ID: 442052 [Multi-domain] Cd Length: 188 Bit Score: 35.50 E-value: 2.03e-03
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Sigma70_r4_2 | pfam08281 | Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
67-94 | 2.05e-03 | ||
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Pssm-ID: 400535 [Multi-domain] Cd Length: 54 Bit Score: 33.20 E-value: 2.05e-03
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HTH_LUXR | smart00421 | helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon |
63-94 | 2.40e-03 | ||
helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon Pssm-ID: 197715 [Multi-domain] Cd Length: 58 Bit Score: 33.27 E-value: 2.40e-03
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CitB | COG2197 | DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal ... |
63-94 | 2.90e-03 | ||
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription]; Pssm-ID: 441799 [Multi-domain] Cd Length: 131 Bit Score: 34.48 E-value: 2.90e-03
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Blast search parameters | ||||
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