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Conserved domains on  [gi|447157846|ref|WP_001235102|]
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MULTISPECIES: ATP-dependent chaperone ClpB [Enterobacteriaceae]

Protein Classification

ATP-dependent Clp protease ATP-binding subunit( domain architecture ID 11485014)

ClpA/ClpB family ATP-dependent Clp protease ATP-binding subunit is a component of the Clp chaperone-protease complex that is involved in protein degradation and disaggregation

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK10865 PRK10865
ATP-dependent chaperone ClpB;
1-857 0e+00

ATP-dependent chaperone ClpB;


:

Pssm-ID: 182791 [Multi-domain]  Cd Length: 857  Bit Score: 1735.09  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846   1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGD 80
Cdd:PRK10865   1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTDINQALSRLPQVEGTGGD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  81 VQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQA 160
Cdd:PRK10865  81 VQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 161 LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240
Cdd:PRK10865 161 LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR 320
Cdd:PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASS 400
Cdd:PRK10865 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASS 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 401 IRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELE 480
Cdd:PRK10865 401 IRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELE 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 481 QAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLL 560
Cdd:PRK10865 481 QAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLL 560
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 561 RMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEK 640
Cdd:PRK10865 561 RMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEK 640
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 641 HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720
Cdd:PRK10865 641 HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 721 GSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEAL 800
Cdd:PRK10865 721 GSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEAL 800
                        810       820       830       840       850
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 447157846 801 KLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ 857
Cdd:PRK10865 801 KLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNDDRIVAVQ 857
 
Name Accession Description Interval E-value
PRK10865 PRK10865
ATP-dependent chaperone ClpB;
1-857 0e+00

ATP-dependent chaperone ClpB;


Pssm-ID: 182791 [Multi-domain]  Cd Length: 857  Bit Score: 1735.09  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846   1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGD 80
Cdd:PRK10865   1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTDINQALSRLPQVEGTGGD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  81 VQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQA 160
Cdd:PRK10865  81 VQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 161 LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240
Cdd:PRK10865 161 LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR 320
Cdd:PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASS 400
Cdd:PRK10865 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASS 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 401 IRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELE 480
Cdd:PRK10865 401 IRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELE 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 481 QAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLL 560
Cdd:PRK10865 481 QAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLL 560
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 561 RMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEK 640
Cdd:PRK10865 561 RMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEK 640
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 641 HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720
Cdd:PRK10865 641 HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 721 GSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEAL 800
Cdd:PRK10865 721 GSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEAL 800
                        810       820       830       840       850
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 447157846 801 KLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ 857
Cdd:PRK10865 801 KLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNDDRIVAVQ 857
chaperone_ClpB TIGR03346
ATP-dependent chaperone ClpB; Members of this protein family are the bacterial ATP-dependent ...
6-854 0e+00

ATP-dependent chaperone ClpB; Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization]


Pssm-ID: 274529 [Multi-domain]  Cd Length: 850  Bit Score: 1632.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846    6 LTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQ 85
Cdd:TIGR03346   1 LTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARPLLQKAGVNVGALRQALEKELERLPKVSGPGGQVYLSP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846   86 DLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQALKKYT 165
Cdd:TIGR03346  81 DLNRLLNLAEKLAQKRGDEFISSEHLLLALLDDKGTLGKLLKEAGATADALEAAINAVRGGQKVTDANAEDQYEALEKYA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  166 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL 245
Cdd:TIGR03346 161 RDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPEGLKNKRLLALDMGAL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  246 VAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEK 325
Cdd:TIGR03346 241 IAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEK 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  326 DAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQI 405
Cdd:TIGR03346 321 DAALERRFQPVFVDEPSVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEI 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  406 DSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIA 485
Cdd:TIGR03346 401 DSKPEELDELDRRIIQLEIEREALKKEKDEASKKRLEDLEKELADLEEEYAELEEQWKAEKASIQGIQQIKEEIEQVRLE 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  486 IEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTM-RLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQ 564
Cdd:TIGR03346 481 LEQAEREGDLAKAAELQYGKLPELEKQLQAAEQKLGEEQnRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEE 560
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  565 ELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVS 644
Cdd:TIGR03346 561 ELHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDSEDAMVRIDMSEYMEKHSVA 640
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  645 RLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDL 724
Cdd:TIGR03346 641 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSDF 720
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  725 IQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLS 804
Cdd:TIGR03346 721 IQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLA 800
                         810       820       830       840       850
                  ....*....|....*....|....*....|....*....|....*....|
gi 447157846  805 ENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIV 854
Cdd:TIGR03346 801 EAGYDPVYGARPLKRAIQREIENPLAKKILAGEVAPGDTIRVDVEGGRLV 850
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
1-854 0e+00

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 1507.29  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846   1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGD 80
Cdd:COG0542    1 MNFEKFTEKAQEALEAAQELARRLGHQEVEPEHLLLALLEQGEGLAAKLLRKLGVDLDALREELEEALGRLPKVSGSSGQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  81 VQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL-ESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQ 159
Cdd:COG0542   81 PYLSPRLKRVLELAELEARKLGDEYISTEHLLLALLrEGEGVAARILKKLGITLEALREALEELRGGSRVTSQNPESKTP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 160 ALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239
Cdd:COG0542  161 ALDKYGRDLTELAREGKLDPVIGRDEEIRRVIQILSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRVLS 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY 319
Cdd:COG0542  241 LDLGALVAGAKYRGEFEERLKAVLDEVKKSEGNIILFIDELHTLVGAGGAEGAMDAANLLKPALARGELRCIGATTLDEY 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAAS 399
Cdd:COG0542  321 RKYIEKDAALERRFQPVLVEEPSVEDTISILRGLKERYEAHHGVRITDEALVAAVRLSDRYITDRFLPDKAIDLIDEAAA 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 400 SIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAEL 479
Cdd:COG0542  401 RVRMEIDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEEL 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 480 EQakiaieqarrvgdlarmselQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKL 559
Cdd:COG0542  481 EQ--------------------RYGKIPELEKELAELEEELAELAPLLREEVTEEDIAEVVSRWTGIPVGKLLEGEREKL 540
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 560 LRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFME 639
Cdd:COG0542  541 LNLEEELHERVIGQDEAVEAVADAIRRSRAGLKDPNRPIGSFLFLGPTGVGKTELAKALAEFLFGDEDALIRIDMSEYME 620
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 640 KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719
Cdd:COG0542  621 KHSVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEIEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 700
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 720 LGSDLIQERFGE-LDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDE 798
Cdd:COG0542  701 IGSELILDLAEDePDYEEMKEAVMEELKKHFRPEFLNRIDEIIVFHPLSKEELRKIVDLQLKRLRKRLAERGITLELTDA 780
                        810       820       830       840       850
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 447157846 799 ALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIV 854
Cdd:COG0542  781 AKDFLAEKGYDPEYGARPLKRAIQRELEDPLAEEILAGEIKEGDTITVDVDDGELV 836
RecA-like_ClpB_Hsp104-like cd19499
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ...
558-763 1.28e-111

Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410907 [Multi-domain]  Cd Length: 178  Bit Score: 338.38  E-value: 1.28e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 558 KLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEF 637
Cdd:cd19499    1 KLLNLEERLHERVVGQDEAVKAVSDAIRRARAGLSDPNRPIGSFLFLGPTGVGKTELAKALAELLFGDEDNLIRIDMSEY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 638 MEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMT 717
Cdd:cd19499   81 MEKHSVSRLIGAPPGYVGYTEGGQLTEAVRRKPYSVVLLDEIEKAHPDVQNLLLQVLDDGRLTDSHGRTVDFKNTIIIMT 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 447157846 718 SNlgsdliqerfgeldyahmkelvlgvvshNFRPEFINRIDEVVVF 763
Cdd:cd19499  161 SN----------------------------HFRPEFLNRIDEIVVF 178
AAA_2 pfam07724
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected ...
596-760 1.73e-94

AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400187 [Multi-domain]  Cd Length: 168  Bit Score: 293.33  E-value: 1.73e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  596 RPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVIL 675
Cdd:pfam07724   1 RPIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  676 LDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFG---ELDYAHMKELVLGVVSHNFRPE 752
Cdd:pfam07724  81 IDEIEKAHPGVQNDLLQILEGGTLTDKQGRTVDFKNTLFIMTGNFGSEKISDASRlgdSPDYELLKEEVMDLLKKGFIPE 160

                  ....*...
gi 447157846  753 FINRIDEV 760
Cdd:pfam07724 161 FLGRLPII 168
ClpB_D2-small smart01086
C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, ...
766-854 1.22e-28

C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilise the functional assembly. The domain is associated with two Clp_N at the N-terminus as well as AAA and AAA_2.


Pssm-ID: 198154 [Multi-domain]  Cd Length: 90  Bit Score: 109.84  E-value: 1.22e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846   766 LGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIR 845
Cdd:smart01086   1 LDKEDLVRIVDLPLNALQKRLAEKGITLEFTDEALDWLAEKGYDPKYGARPLRRIIQRELEDPLAELILSGELKDGDTVV 80

                   ....*....
gi 447157846   846 LEVNEDRIV 854
Cdd:smart01086  81 VDVDDGELV 89
 
Name Accession Description Interval E-value
PRK10865 PRK10865
ATP-dependent chaperone ClpB;
1-857 0e+00

ATP-dependent chaperone ClpB;


Pssm-ID: 182791 [Multi-domain]  Cd Length: 857  Bit Score: 1735.09  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846   1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGD 80
Cdd:PRK10865   1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTDINQALSRLPQVEGTGGD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  81 VQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQA 160
Cdd:PRK10865  81 VQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 161 LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240
Cdd:PRK10865 161 LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR 320
Cdd:PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASS 400
Cdd:PRK10865 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASS 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 401 IRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELE 480
Cdd:PRK10865 401 IRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELE 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 481 QAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLL 560
Cdd:PRK10865 481 QAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLL 560
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 561 RMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEK 640
Cdd:PRK10865 561 RMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEK 640
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 641 HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720
Cdd:PRK10865 641 HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 721 GSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEAL 800
Cdd:PRK10865 721 GSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEAL 800
                        810       820       830       840       850
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 447157846 801 KLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ 857
Cdd:PRK10865 801 KLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNDDRIVAVQ 857
chaperone_ClpB TIGR03346
ATP-dependent chaperone ClpB; Members of this protein family are the bacterial ATP-dependent ...
6-854 0e+00

ATP-dependent chaperone ClpB; Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization]


Pssm-ID: 274529 [Multi-domain]  Cd Length: 850  Bit Score: 1632.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846    6 LTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQ 85
Cdd:TIGR03346   1 LTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARPLLQKAGVNVGALRQALEKELERLPKVSGPGGQVYLSP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846   86 DLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQALKKYT 165
Cdd:TIGR03346  81 DLNRLLNLAEKLAQKRGDEFISSEHLLLALLDDKGTLGKLLKEAGATADALEAAINAVRGGQKVTDANAEDQYEALEKYA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  166 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL 245
Cdd:TIGR03346 161 RDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPEGLKNKRLLALDMGAL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  246 VAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEK 325
Cdd:TIGR03346 241 IAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEK 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  326 DAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQI 405
Cdd:TIGR03346 321 DAALERRFQPVFVDEPSVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEI 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  406 DSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIA 485
Cdd:TIGR03346 401 DSKPEELDELDRRIIQLEIEREALKKEKDEASKKRLEDLEKELADLEEEYAELEEQWKAEKASIQGIQQIKEEIEQVRLE 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  486 IEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTM-RLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQ 564
Cdd:TIGR03346 481 LEQAEREGDLAKAAELQYGKLPELEKQLQAAEQKLGEEQnRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEE 560
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  565 ELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVS 644
Cdd:TIGR03346 561 ELHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDSEDAMVRIDMSEYMEKHSVA 640
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  645 RLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDL 724
Cdd:TIGR03346 641 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSDF 720
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  725 IQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLS 804
Cdd:TIGR03346 721 IQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLA 800
                         810       820       830       840       850
                  ....*....|....*....|....*....|....*....|....*....|
gi 447157846  805 ENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIV 854
Cdd:TIGR03346 801 EAGYDPVYGARPLKRAIQREIENPLAKKILAGEVAPGDTIRVDVEGGRLV 850
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
1-854 0e+00

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 1507.29  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846   1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGD 80
Cdd:COG0542    1 MNFEKFTEKAQEALEAAQELARRLGHQEVEPEHLLLALLEQGEGLAAKLLRKLGVDLDALREELEEALGRLPKVSGSSGQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  81 VQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL-ESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQ 159
Cdd:COG0542   81 PYLSPRLKRVLELAELEARKLGDEYISTEHLLLALLrEGEGVAARILKKLGITLEALREALEELRGGSRVTSQNPESKTP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 160 ALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239
Cdd:COG0542  161 ALDKYGRDLTELAREGKLDPVIGRDEEIRRVIQILSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRVLS 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY 319
Cdd:COG0542  241 LDLGALVAGAKYRGEFEERLKAVLDEVKKSEGNIILFIDELHTLVGAGGAEGAMDAANLLKPALARGELRCIGATTLDEY 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAAS 399
Cdd:COG0542  321 RKYIEKDAALERRFQPVLVEEPSVEDTISILRGLKERYEAHHGVRITDEALVAAVRLSDRYITDRFLPDKAIDLIDEAAA 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 400 SIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAEL 479
Cdd:COG0542  401 RVRMEIDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEEL 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 480 EQakiaieqarrvgdlarmselQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKL 559
Cdd:COG0542  481 EQ--------------------RYGKIPELEKELAELEEELAELAPLLREEVTEEDIAEVVSRWTGIPVGKLLEGEREKL 540
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 560 LRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFME 639
Cdd:COG0542  541 LNLEEELHERVIGQDEAVEAVADAIRRSRAGLKDPNRPIGSFLFLGPTGVGKTELAKALAEFLFGDEDALIRIDMSEYME 620
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 640 KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719
Cdd:COG0542  621 KHSVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEIEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 700
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 720 LGSDLIQERFGE-LDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDE 798
Cdd:COG0542  701 IGSELILDLAEDePDYEEMKEAVMEELKKHFRPEFLNRIDEIIVFHPLSKEELRKIVDLQLKRLRKRLAERGITLELTDA 780
                        810       820       830       840       850
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 447157846 799 ALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIV 854
Cdd:COG0542  781 AKDFLAEKGYDPEYGARPLKRAIQRELEDPLAEEILAGEIKEGDTITVDVDDGELV 836
clpC CHL00095
Clp protease ATP binding subunit
17-856 0e+00

Clp protease ATP binding subunit


Pssm-ID: 214361 [Multi-domain]  Cd Length: 821  Bit Score: 871.69  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  17 AQSLA--LGHDnqFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRlpqveGTG---GDVQPSQDLVRVL 91
Cdd:CHL00095  16 SQEEArrLGHN--FVGTEQILLGLIGEGTGIAARALKSMGVTLKDARIEVEKIIGR-----GTGfvaVEIPFTPRAKRVL 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  92 NLCDKLAQKRGDNFISSELFVLAAL-ESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQ---ALKKYTID 167
Cdd:CHL00095  89 EMSLEEARDLGHNYIGTEHLLLALLeEGEGVAARVLENLGVDLSKIRSLILNLIGEIIEAILGAEQSRSktpTLEEFGTN 168
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 168 LTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA 247
Cdd:CHL00095 169 LTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLA 248
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 248 GAKYRGEFEERLKGVLNDLaKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDA 327
Cdd:CHL00095 249 GTKYRGEFEERLKRIFDEI-QENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDP 327
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 328 ALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDS 407
Cdd:CHL00095 328 ALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSR 407
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 408 KPEELDRLDRriiqlklEQQALMKESDEASKkrldmlnEELSDKERQYSELEEEWKAEKASLsgtqtikaeleqakiaie 487
Cdd:CHL00095 408 LPPAARELDK-------ELREILKDKDEAIR-------EQDFETAKQLRDREMEVRAQIAAI------------------ 455
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 488 qarrvgdlarmselqygkipelekqleAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELH 567
Cdd:CHL00095 456 ---------------------------IQSKKTEEEKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLH 508
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 568 HRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647
Cdd:CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLI 588
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 648 GAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQE 727
Cdd:CHL00095 589 GSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIET 668
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 728 RFGEL------------DYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHI 795
Cdd:CHL00095 669 NSGGLgfelsenqlsekQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEV 748
                        810       820       830       840       850       860
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 447157846 796 SDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAV 856
Cdd:CHL00095 749 TERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVLSFKIKPGDIIIVDVNDEKEVKI 809
VI_ClpV1 TIGR03345
type VI secretion ATPase, ClpV1 family; Members of this protein family are homologs of ClpB, ...
6-835 0e+00

type VI secretion ATPase, ClpV1 family; Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274528 [Multi-domain]  Cd Length: 852  Bit Score: 784.90  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846    6 LTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQveGTGGDVQPSQ 85
Cdd:TIGR03345   1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLARALDKLPR--GNTRTPVFSP 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846   86 DLVRVLNLCDKLAQKR-GDNFISSELFVLAALES---RGTLADILKA-AGATTANITQAIEQMRGGESVNDQGAED---- 156
Cdd:TIGR03345  79 HLVELLQEAWLLASLElGDGRIRSGHLLLALLTDpelRRLLGSISPElAKIDREALREALPALVEGSAEASAAAADaapa 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  157 -------QRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVP 229
Cdd:TIGR03345 159 gaaagaaGTSALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVP 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  230 EGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELH 309
Cdd:TIGR03345 239 PALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELR 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  310 CVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDK 389
Cdd:TIGR03345 319 TIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDK 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  390 AIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKES--DEASKKRLDMLNEELSDKERQYSELEEEWKAEKA 467
Cdd:TIGR03345 399 AVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAalGADHDERLAELRAELAALEAELAALEARWQQEKE 478
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  468 SLSGTQTIKAELEQAkiaiEQARRVGDLARMSELQygkipELEKQLEAAtqleGKTMRLLRNKVTDAEIAEVLARWTGIP 547
Cdd:TIGR03345 479 LVEAILALRAELEAD----ADAPADDDDALRAQLA-----ELEAALASA----QGEEPLVFPEVDAQAVAEVVADWTGIP 545
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  548 VSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDE 627
Cdd:TIGR03345 546 VGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQ 625
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  628 AMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTV 707
Cdd:TIGR03345 626 NLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREI 705
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  708 DFRNTVVIMTSNLGSDLIQERFGELDYA----HMKELVLGVVSHNFRPEFINRIdEVVVFHPLGEQHIASIAQIQLKRLY 783
Cdd:TIGR03345 706 DFKNTVILLTSNAGSDLIMALCADPETApdpeALLEALRPELLKVFKPAFLGRM-TVIPYLPLDDDVLAAIVRLKLDRIA 784
                         810       820       830       840       850
                  ....*....|....*....|....*....|....*....|....*....|...
gi 447157846  784 KRLEER-GYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILS 835
Cdd:TIGR03345 785 RRLKENhGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILE 837
ClpA TIGR02639
ATP-dependent Clp protease ATP-binding subunit clpA; [Protein fate, Degradation of proteins, ...
6-848 0e+00

ATP-dependent Clp protease ATP-binding subunit clpA; [Protein fate, Degradation of proteins, peptides, and glycopeptides]


Pssm-ID: 274241 [Multi-domain]  Cd Length: 730  Bit Score: 756.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846    6 LTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSvsPLLTSAGINAGQLRTDINQAL-NRLPQ-VEGTGGDVQP 83
Cdd:TIGR02639   1 ISEELERILSDALEEAKERRHEFVTLEHLLLALLDDNEAI--EILEECGGDVELLRKRLEDYLeENLPViPEDIDEEPEQ 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846   84 SQDLVRVLNLCDKLAQKRGDNFISsELFVLAAL--ESRGTLADILKAAGATTANITQAI-EQMRGGESVNDQGA------ 154
Cdd:TIGR02639  79 TVGVQRVIQRALLHVKSAGKKEID-IGDLLVALfdEEDSHASYFLKSQGITRLDILNYIsHGISKDDGKDQLGEeagkee 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  155 EDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKG 234
Cdd:TIGR02639 158 EKGQDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIVEGLALRIAEGKVPERLKN 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  235 RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEgNVILFIDELHTMVGAGK-ADGAMDAGNMLKPALARGELHCVGA 313
Cdd:TIGR02639 238 AKIYSLDMGTLLAGTKYRGDFEERLKAVVSEIEKEP-NAILFIDEIHTIVGAGAtSGGSMDASNLLKPALSSGKIRCIGS 316
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  314 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDL 393
Cdd:TIGR02639 317 TTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEQYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDV 396
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  394 IDEAASSIRMQIDSKPEEldrldrriiqlkleqqalmkesdeaskkrldmlneelsdkerqyseleeewkaekaslsgtq 473
Cdd:TIGR02639 397 IDEAGAAFRLRPKAKKKA-------------------------------------------------------------- 414
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  474 tikaeleqakiaieqarrvgdlarmselqygkipelekqleaatqlegktmrllrnKVTDAEIAEVLARWTGIPVSRMME 553
Cdd:TIGR02639 415 --------------------------------------------------------NVNVKDIENVVAKMAKIPVKTVSS 438
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  554 SEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMfdsDEAMVRID 633
Cdd:TIGR02639 439 DDREQLKNLEKNLKAKIFGQDEAIDQLVSAIKRSRAGLGDPNKPVGSFLFVGPTGVGKTELAKQLAEEL---GVHLLRFD 515
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  634 MSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTV 713
Cdd:TIGR02639 516 MSEYMEKHTVSRLIGSPPGYVGFEQGGLLTDAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVI 595
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  714 VIMTSNLGSD--------LIQERFGELDyahmkelvLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKR 785
Cdd:TIGR02639 596 LIMTSNAGASemskppigFGGENRESKS--------LKAIKKLFSPEFRNRLDAIIHFNDLSEEMAEKIVKKFLDELQDQ 667
                         810       820       830       840       850       860
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 447157846  786 LEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEV 848
Cdd:TIGR02639 668 LNEKNIELELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILFGKLKKGGSVKISL 730
clpA PRK11034
ATP-dependent Clp protease ATP-binding subunit; Provisional
6-852 0e+00

ATP-dependent Clp protease ATP-binding subunit; Provisional


Pssm-ID: 236828 [Multi-domain]  Cd Length: 758  Bit Score: 557.14  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846   6 LTNKFQLALADAQSLALGHDNQFIEPLHLMSALLnqEGGSVSPLLTSAGINAGQLRTD----INQALNRLPQVEGTGgDV 81
Cdd:PRK11034   2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALL--SNPSAREALEACSVDLVALRQEleafIEQTTPVLPASEEER-DT 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  82 QPSQDLVRVLNLCDKLAQKRGDNFISSElFVLAAL--ESRGTLADILKAAGATTANITQAI-------EQMRGGESVNDQ 152
Cdd:PRK11034  79 QPTLSFQRVLQRAVFHVQSSGRSEVTGA-NVLVAIfsEQESQAAYLLRKHEVSRLDVVNFIshgtrkdEPSQSSDPGSQP 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 153 GAEDQRQA---LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVP 229
Cdd:PRK11034 158 NSEEQAGGeerMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVP 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 230 EGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLaKQEGNVILFIDELHTMVGAGKADGA-MDAGNMLKPALARGEL 308
Cdd:PRK11034 238 EVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL-EQDTNSILFIDEIHTIIGAGAASGGqVDAANLIKPLLSSGKI 316
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 309 HCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPD 388
Cdd:PRK11034 317 RVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPD 396
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 389 KAIDLIDEAASSIRMQidskpeeldrldrriiqlkleqqalmkesdEASKKRldmlneelsdkerqyseleeewkaekas 468
Cdd:PRK11034 397 KAIDVIDEAGARARLM------------------------------PVSKRK---------------------------- 418
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 469 lsgtqtikaeleqakiaieqarrvgdlarmselqygkipelekqleaatqlegKTmrllrnkVTDAEIAEVLARWTGIPV 548
Cdd:PRK11034 419 -----------------------------------------------------KT-------VNVADIESVVARIARIPE 438
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 549 SRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMfdsDEA 628
Cdd:PRK11034 439 KSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIE 515
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 629 MVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVD 708
Cdd:PRK11034 516 LLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKAD 595
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 709 FRNTVVIMTSNLGSDLIQER---FGELDYAH--MKElvlgvVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLY 783
Cdd:PRK11034 596 FRNVVLVMTTNAGVRETERKsigLIHQDNSTdaMEE-----IKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQ 670
                        810       820       830       840       850       860
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 447157846 784 KRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDR 852
Cdd:PRK11034 671 AQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEK 739
RecA-like_ClpB_Hsp104-like cd19499
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ...
558-763 1.28e-111

Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410907 [Multi-domain]  Cd Length: 178  Bit Score: 338.38  E-value: 1.28e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 558 KLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEF 637
Cdd:cd19499    1 KLLNLEERLHERVVGQDEAVKAVSDAIRRARAGLSDPNRPIGSFLFLGPTGVGKTELAKALAELLFGDEDNLIRIDMSEY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 638 MEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMT 717
Cdd:cd19499   81 MEKHSVSRLIGAPPGYVGYTEGGQLTEAVRRKPYSVVLLDEIEKAHPDVQNLLLQVLDDGRLTDSHGRTVDFKNTIIIMT 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 447157846 718 SNlgsdliqerfgeldyahmkelvlgvvshNFRPEFINRIDEVVVF 763
Cdd:cd19499  161 SN----------------------------HFRPEFLNRIDEIVVF 178
AAA_2 pfam07724
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected ...
596-760 1.73e-94

AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400187 [Multi-domain]  Cd Length: 168  Bit Score: 293.33  E-value: 1.73e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  596 RPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVIL 675
Cdd:pfam07724   1 RPIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  676 LDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFG---ELDYAHMKELVLGVVSHNFRPE 752
Cdd:pfam07724  81 IDEIEKAHPGVQNDLLQILEGGTLTDKQGRTVDFKNTLFIMTGNFGSEKISDASRlgdSPDYELLKEEVMDLLKKGFIPE 160

                  ....*...
gi 447157846  753 FINRIDEV 760
Cdd:pfam07724 161 FLGRLPII 168
AAA_lid_9 pfam17871
AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the ...
342-445 1.43e-46

AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.


Pssm-ID: 465544 [Multi-domain]  Cd Length: 104  Bit Score: 161.50  E-value: 1.43e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  342 SVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQ 421
Cdd:pfam17871   1 SVEEAIEILRGLKPKYEKHHGVRISDEALEAAVKLSKRYITDRFLPDKAIDLLDEACARVRLSQESKPEELEDLERELAK 80
                          90       100
                  ....*....|....*....|....
gi 447157846  422 LKLEQQALMKESDEASKKRLDMLN 445
Cdd:pfam17871  81 LEIEKEALEREQDFEKAERLAKLE 104
ClpB_D2-small pfam10431
C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, ...
766-846 2.30e-31

C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, pfam00004) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerization, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilize the functional assembly. The domain is associated with two Clp_N, pfam02861, at the N-terminus as well as AAA, pfam00004 and AAA_2, pfam07724.


Pssm-ID: 463090 [Multi-domain]  Cd Length: 81  Bit Score: 117.12  E-value: 2.30e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  766 LGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIR 845
Cdd:pfam10431   1 LSKEELRKIVDLQLKELQKRLAERGITLELTDAAKDWLAEKGYDPEYGARPLRRAIQREIEDPLAEEILSGELKEGDTVR 80

                  .
gi 447157846  846 L 846
Cdd:pfam10431  81 V 81
ClpB_D2-small smart01086
C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, ...
766-854 1.22e-28

C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilise the functional assembly. The domain is associated with two Clp_N at the N-terminus as well as AAA and AAA_2.


Pssm-ID: 198154 [Multi-domain]  Cd Length: 90  Bit Score: 109.84  E-value: 1.22e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846   766 LGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIR 845
Cdd:smart01086   1 LDKEDLVRIVDLPLNALQKRLAEKGITLEFTDEALDWLAEKGYDPKYGARPLRRIIQRELEDPLAELILSGELKDGDTVV 80

                   ....*....
gi 447157846   846 LEVNEDRIV 854
Cdd:smart01086  81 VDVDDGELV 89
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
181-341 1.96e-22

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 94.52  E-value: 1.96e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 181 IGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINgevpeglKGRRVLALDMGALVAGAKYRGEFEERLK 260
Cdd:cd00009    1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR-------PGAPFLYLNASDLLEGLVVAELFGHFLV 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 261 GVLNDLAKQEGNVILFIDELHTMVGAGKADG--AMDAGNMLKPalARGELHCVGATTLDEYRQyieKDAALERRFQKVFV 338
Cdd:cd00009   74 RLLFELAEKAKPGVLFIDEIDSLSRGAQNALlrVLETLNDLRI--DRENVRVIGATNRPLLGD---LDRALYDRLDIRIV 148

                 ...
gi 447157846 339 AEP 341
Cdd:cd00009  149 IPL 151
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
571-765 5.14e-20

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 87.59  E-value: 5.14e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 571 IGQNEAVDAVSNAIRRsragladpnRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAP 650
Cdd:cd00009    1 VGQEEAIEALREALEL---------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 651 PGYVgyeeggyLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTdgqgrTVDFRNTVVIMTSNLGSDLIqerfg 730
Cdd:cd00009   72 LVRL-------LFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDL-----RIDRENVRVIGATNRPLLGD----- 134
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 447157846 731 eldyahmkelvlgvvshnFRPEFINRIDEVVVFHP 765
Cdd:cd00009  135 ------------------LDRALYDRLDIRIVIPL 151
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
602-725 2.44e-14

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 71.25  E-value: 2.44e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846   602 LFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGY----LTEAVRRRPYSVILLD 677
Cdd:smart00382   6 LIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELrlrlALALARKLKPDVLILD 85
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 447157846   678 EVEKAHPDVFNILLQVLDDGRLTDGQGRtvdFRNTVVIMTSNLGSDLI 725
Cdd:smart00382  86 EITSLLDAEQEALLLLLEELRLLLLLKS---EKNLTVILTTNDEKDLG 130
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
204-337 1.37e-13

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 68.39  E-value: 1.37e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  204 LIGEPGVGKTAIVEGLAQRIingevpeglkGRRVLALDMGALVagAKYRGEFEERLKGVLnDLAKQEGNVILFIDELHTM 283
Cdd:pfam00004   3 LYGPPGTGKTTLAKAVAKEL----------GAPFIEISGSELV--SKYVGESEKRLRELF-EAAKKLAPCVIFIDEIDAL 69
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 447157846  284 VGAGKADG---AMDAGNMLKPAL-----ARGELHCVGATTldeyrqYIEK-DAALERRFQKVF 337
Cdd:pfam00004  70 AGSRGSGGdseSRRVVNQLLTELdgftsSNSKVIVIAATN------RPDKlDPALLGRFDRII 126
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
600-719 1.34e-11

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 62.70  E-value: 1.34e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  600 SFLFLGPTGVGKTELCKALAnFMFDSDEAMVrIDMSEFMEKhsvSRLVGA--PPGYVGYEEGGYLTEAVRRRpySVILLD 677
Cdd:pfam07728   1 GVLLVGPPGTGKTELAERLA-AALSNRPVFY-VQLTRDTTE---EDLFGRrnIDPGGASWVDGPLVRAAREG--EIAVLD 73
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 447157846  678 EVEKAHPDVFNILLQVLDDGRLTDGQGRT---VDFRNTVVIMTSN 719
Cdd:pfam07728  74 EINRANPDVLNSLLSLLDERRLLLPDGGElvkAAPDGFRLIATMN 118
SpoVK COG0464
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ...
37-382 1.64e-11

AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 440232 [Multi-domain]  Cd Length: 397  Bit Score: 67.24  E-value: 1.64e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  37 ALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL 116
Cdd:COG0464   16 LLLDDAALRLLLLLLLALAAALLLLLLLLLLLLLALLLVELLLLLLSGALAALLLLALLLLALLALLAALLSALELLLLG 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 117 ESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDE---EIRRTIQV 193
Cdd:COG0464   96 ELLLLLLLLLLLLLLLLDLERALLELLRESAEALALAAPLVTYEDIGGLEEELLELREAILDDLGGLEEvkeELRELVAL 175
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 194 LQRRTK-------NNP---VLIGEPGVGKTAIVEGLAQRIingevpeglkGRRVLALDMGALVagAKYRGEFEERLKGVL 263
Cdd:COG0464  176 PLKRPElreeyglPPPrglLLYGPPGTGKTLLARALAGEL----------GLPLIEVDLSDLV--SKYVGETEKNLREVF 243
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 264 nDLAKQEGNVILFIDELHTMVGA--GKADGAMDA--GNMLKpALA--RGELHCVGATtldeYRqyIEK-DAALERRFQ-K 335
Cdd:COG0464  244 -DKARGLAPCVLFIDEADALAGKrgEVGDGVGRRvvNTLLT-EMEelRSDVVVIAAT----NR--PDLlDPALLRRFDeI 315
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*....
gi 447157846 336 VFVAEPSVEDTIAILRGLKERYELHHHVqitDPAIVAAAT--LSHRYIA 382
Cdd:COG0464  316 IFFPLPDAEERLEIFRIHLRKRPLDEDV---DLEELAEATegLSGADIR 361
RecA-like_protease cd19481
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ...
575-733 7.07e-11

proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410889 [Multi-domain]  Cd Length: 158  Bit Score: 61.53  E-value: 7.07e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 575 EAVDAVSNAIRRSRAGLadpNRPIGsFLFLGPTGVGKTELCKALANfmfDSDEAMVRIDMSEFMEKHSvsrlvgappgYV 654
Cdd:cd19481    7 EAVEAPRRGSRLRRYGL---GLPKG-ILLYGPPGTGKTLLAKALAG---ELGLPLIVVKLSSLLSKYV----------GE 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 655 GYEEGGYLTEAVRRRPYSVILLDEVEKAHPD------------VFNILLQVLDDGRLTDgqgrtvdfrNTVVIMTSNLGS 722
Cdd:cd19481   70 SEKNLRKIFERARRLAPCILFIDEIDAIGRKrdssgesgelrrVLNQLLTELDGVNSRS---------KVLVIAATNRPD 140
                        170
                 ....*....|...
gi 447157846 723 DLIQE--RFGELD 733
Cdd:cd19481  141 LLDPAllRPGRFD 153
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
602-735 6.19e-10

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 57.99  E-value: 6.19e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  602 LFLGPTGVGKTELCKALANfmfDSDEAMVRIDMSEFMEKHsvsrlVGAPPGYVgyeeGGYLTEAVRRRPySVILLDEVEK 681
Cdd:pfam00004   2 LLYGPPGTGKTTLAKAVAK---ELGAPFIEISGSELVSKY-----VGESEKRL----RELFEAAKKLAP-CVIFIDEIDA 68
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 447157846  682 AHP-----------DVFNILLQVLDdgrltdgqGRTVDFRNTVVIMTSNlgsdliqeRFGELDYA 735
Cdd:pfam00004  69 LAGsrgsggdsesrRVVNQLLTELD--------GFTSSNSKVIVIAATN--------RPDKLDPA 117
Clp_N pfam02861
Clp amino terminal domain, pathogenicity island component; This short domain is found in one ...
17-69 7.36e-10

Clp amino terminal domain, pathogenicity island component; This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site. In many bacterial species, including E.coli, this region represents the N-terminus of one of the key components of the pathogenicity island complex that injects toxin from one bacterium into another.


Pssm-ID: 460724 [Multi-domain]  Cd Length: 53  Bit Score: 55.22  E-value: 7.36e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 447157846   17 AQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALN 69
Cdd:pfam02861   1 AQELARALGHQYIGTEHLLLALLEEDDGLAARLLKKAGVDLDALREAIEKLLG 53
Clp_N pfam02861
Clp amino terminal domain, pathogenicity island component; This short domain is found in one ...
94-145 4.59e-09

Clp amino terminal domain, pathogenicity island component; This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site. In many bacterial species, including E.coli, this region represents the N-terminus of one of the key components of the pathogenicity island complex that injects toxin from one bacterium into another.


Pssm-ID: 460724 [Multi-domain]  Cd Length: 53  Bit Score: 52.91  E-value: 4.59e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 447157846   94 CDKLAQKRGDNFISSELFVLAAL-ESRGTLADILKAAGATTANITQAIEQMRG 145
Cdd:pfam02861   1 AQELARALGHQYIGTEHLLLALLeEDDGLAARLLKKAGVDLDALREAIEKLLG 53
SpoVK COG0464
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ...
393-781 1.58e-08

AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 440232 [Multi-domain]  Cd Length: 397  Bit Score: 57.61  E-value: 1.58e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 393 LIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGT 472
Cdd:COG0464    1 LAELLALAVALALALLLLDDAALRLLLLLLLALAAALLLLLLLLLLLLLALLLVELLLLLLSGALAALLLLALLLLALLA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 473 QTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMM 552
Cdd:COG0464   81 LLAALLSALELLLLGELLLLLLLLLLLLLLLLDLERALLELLRESAEALALAAPLVTYEDIGGLEEELLELREAILDDLG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 553 ESEREKllrmeQELHHRVIGQNEAVDAvsnairRSRAGLadpnRPIGSFLFLGPTGVGKTELCKALANfmfDSDEAMVRI 632
Cdd:COG0464  161 GLEEVK-----EELRELVALPLKRPEL------REEYGL----PPPRGLLLYGPPGTGKTLLARALAG---ELGLPLIEV 222
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 633 DMSEFMEKhsvsrlvgappgYVGyEEGGYLTEAV---RRRPYSVILLDEVEKAHPD-----------VFNILLQVLDDGR 698
Cdd:COG0464  223 DLSDLVSK------------YVG-ETEKNLREVFdkaRGLAPCVLFIDEADALAGKrgevgdgvgrrVVNTLLTEMEELR 289
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 699 ltdgqgrtvdfRNTVVIMTSNlgsdliqeRFGELDyahmkelvlgvvshnfrPEFINRIDEVVVFHPLGEQHIASIAQIQ 778
Cdd:COG0464  290 -----------SDVVVIAATN--------RPDLLD-----------------PALLRRFDEIIFFPLPDAEERLEIFRIH 333

                 ...
gi 447157846 779 LKR 781
Cdd:COG0464  334 LRK 336
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
198-341 2.31e-07

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 50.83  E-value: 2.31e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846   198 TKNNPVLIGEPGVGKTAIVEGLAQRI---------INGEVPEglkgRRVLALDMGALVAGAKYRGEFEERLKGVLnDLAK 268
Cdd:smart00382   1 PGEVILIVGPPGSGKTTLARALARELgppgggviyIDGEDIL----EEVLDQLLLIIVGGKKASGSGELRLRLAL-ALAR 75
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 447157846   269 QEGNVILFIDELHTMVGAG--KADGAMDAGNMLKPALARGELHCVGATTLDEyrqyIEKDAALERRFQKVFVAEP 341
Cdd:smart00382  76 KLKPDVLILDEITSLLDAEqeALLLLLEELRLLLLLKSEKNLTVILTTNDEK----DLGPALLRRRFDRRIVLLL 146
RecA-like_HslU cd19498
ATP-dependent protease ATPase subunit HslU; HslU is a component of the ATP-dependent protease ...
564-681 1.14e-06

ATP-dependent protease ATPase subunit HslU; HslU is a component of the ATP-dependent protease HslVU. In HslVU, HslU ATPase serves to unfold and translocate protein substrate, and the HslV protease degrades the unfolded proteins. This RecA-like_HslU subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410906 [Multi-domain]  Cd Length: 183  Bit Score: 49.69  E-value: 1.14e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 564 QELHHRVIGQNEAVDAVS----NAIRRSR--AGLADPNRPiGSFLFLGPTGVGKTELCKALANFMfdsDEAMVRIDMSEF 637
Cdd:cd19498    7 SELDKYIIGQDEAKRAVAialrNRWRRMQlpEELRDEVTP-KNILMIGPTGVGKTEIARRLAKLA---GAPFIKVEATKF 82
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 447157846 638 MEKhsvsrlvgappGYVGYEeggyLTEAVRRRPYSVILLDEVEK 681
Cdd:cd19498   83 TEV-----------GYVGRD----VESIIRDLVEGIVFIDEIDK 111
AtoC COG2204
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ...
548-803 1.08e-05

DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];


Pssm-ID: 441806 [Multi-domain]  Cd Length: 418  Bit Score: 48.81  E-value: 1.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 548 VSRMMESEReklLRMEQELHHRVIGQNEAVDAVSNAIRRsragLADPNRPIgsfLFLGPTGVGKTELCKALANFMFDSDE 627
Cdd:COG2204  114 VERALERRR---LRRENAEDSGLIGRSPAMQEVRRLIEK----VAPSDATV---LITGESGTGKELVARAIHRLSPRADG 183
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 628 AMVRIDMSEFMEKHSVSRLVGAppgyvgyeEGGYLTEAVRRRPYSV-------ILLDEVEKAHPDVFNILLQVLDDG--- 697
Cdd:COG2204  184 PFVAVNCAAIPEELLESELFGH--------EKGAFTGAVARRIGKFeladggtLFLDEIGEMPLALQAKLLRVLQERefe 255
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 698 RLTDGQGRTVDFRntvVIMTSNLgsDLIQErfgeldyahmkelvlgVVSHNFRPEFINRIDEVVVFHP-LGEQH--IASI 774
Cdd:COG2204  256 RVGGNKPIPVDVR---VIAATNR--DLEEL----------------VEEGRFREDLYYRLNVFPIELPpLRERRedIPLL 314
                        250       260
                 ....*....|....*....|....*....
gi 447157846 775 AQIQLKRLYKRLeerGYEIHISDEALKLL 803
Cdd:COG2204  315 ARHFLARFAAEL---GKPVKLSPEALEAL 340
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
388-593 1.24e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 49.16  E-value: 1.24e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 388 DKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEAsKKRLDMLNEELSDKERQYSELEEEWKAEKA 467
Cdd:COG1196  280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAEL-EEELEELEEELEELEEELEEAEEELEEAEA 358
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 468 SLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQyGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARwtgip 547
Cdd:COG1196  359 ELAEAEEALLEAEAELAEAEEELEELAEELLEALR-AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE----- 432
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 447157846 548 vSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLAD 593
Cdd:COG1196  433 -LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
203-333 1.43e-05

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 45.36  E-value: 1.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  203 VLIGEPGVGKTAIVEGLAQRIINGEV----------PEGLKGRRVLALDMGALVAGAKYRgEFEERLKGVLNDLAKQEGN 272
Cdd:pfam07728   3 LLVGPPGTGKTELAERLAAALSNRPVfyvqltrdttEEDLFGRRNIDPGGASWVDGPLVR-AAREGEIAVLDEINRANPD 81
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 447157846  273 VilfIDELHTmvgagkadgAMDAGNMLKPALaRGELHC------VGATTLDEYRQYIEKDAALERRF 333
Cdd:pfam07728  82 V---LNSLLS---------LLDERRLLLPDG-GELVKAapdgfrLIATMNPLDRGLNELSPALRSRF 135
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
596-782 1.83e-04

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 44.61  E-value: 1.83e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 596 RPIGSFLFLGPTGVGKTELCKALANfmfDSDEAMVRIDMSEFMEKhsvsrlvgappgYVGyeEGGYL-----TEAVRRRP 670
Cdd:COG1222  110 EPPKGVLLYGPPGTGKTLLAKAVAG---ELGAPFIRVRGSELVSK------------YIG--EGARNvrevfELAREKAP 172
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 671 ySVILLDEVE----KAHPD--------VFNILLQVLDDgrltdgqgrtVDFRNTVVIM-TSNlgsdliqeRFGELDYAhm 737
Cdd:COG1222  173 -SIIFIDEIDaiaaRRTDDgtsgevqrTVNQLLAELDG----------FESRGDVLIIaATN--------RPDLLDPA-- 231
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 447157846 738 kelVLgvvshnfRPefiNRIDEVVVFHPLGEQHIASIAQIQLKRL 782
Cdd:COG1222  232 ---LL-------RP---GRFDRVIEVPLPDEEAREEILKIHLRDM 263
AAA_16 pfam13191
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ...
179-281 1.88e-04

AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.


Pssm-ID: 433025 [Multi-domain]  Cd Length: 167  Bit Score: 42.88  E-value: 1.88e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  179 PVIGRDEEIRRTIQVLQRRTKNNP---VLIGEPGVGKTAIVEGLAQR----------------IINGEVPEGLKGRRVLA 239
Cdd:pfam13191   1 RLVGREEELEQLLDALDRVRSGRPpsvLLTGEAGTGKTTLLRELLRAlerdggyflrgkcdenLPYSPLLEALTREGLLR 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 447157846  240 --LDMGALVAGAKYRGEFEERLKGV------------------LNDLAKQEGNVILFIDELH 281
Cdd:pfam13191  81 qlLDELESSLLEAWRAALLEALAPVpelpgdlaerlldlllrlLDLLARGERPLVLVLDDLQ 142
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
415-516 1.92e-04

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 45.20  E-value: 1.92e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 415 LDRRIIQ----------LKLEQqalMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGT-QTIKAELEQ-A 482
Cdd:PRK00409 499 LPENIIEeakkligedkEKLNE---LIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEeDKLLEEAEKeA 575
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 447157846 483 KIAIEQARRVGD--LARMSELQYGKIPEL-EKQLEAA 516
Cdd:PRK00409 576 QQAIKEAKKEADeiIKELRQLQKGGYASVkAHELIEA 612
RecA-like_protease cd19481
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ...
204-283 1.95e-04

proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410889 [Multi-domain]  Cd Length: 158  Bit Score: 42.66  E-value: 1.95e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 204 LIGEPGVGKTAIVEGLAQRIingevpeglkGRRVLALDMGALVagAKYRGEFEERLKGVLnDLAKQEGNVILFIDELHTM 283
Cdd:cd19481   31 LYGPPGTGKTLLAKALAGEL----------GLPLIVVKLSSLL--SKYVGESEKNLRKIF-ERARRLAPCILFIDEIDAI 97
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
347-551 2.25e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 44.91  E-value: 2.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  347 IAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRqlpdkAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQ 426
Cdd:COG4913   251 IELLEPIRELAERYAAARERLAELEYLRAALRLWFAQR-----RLELLEAELEELRAELARLEAELERLEARLDALREEL 325
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  427 QALMKESDEASKKRLDMLNEELSDKERQYSELEEEWK-----AEKASLSGTQTIKAELEQAKIAIEQARRVGD-LARMSE 500
Cdd:COG4913   326 DELEAQIRGNGGDRLEQLEREIERLERELEERERRRArlealLAALGLPLPASAEEFAALRAEAAALLEALEEeLEALEE 405
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 447157846  501 LQYGKIPELEKQLEAATQLEGKTMRLLRNKVT-DAEIAEV---LARWTGIPVSRM 551
Cdd:COG4913   406 ALAEAEAALRDLRRELRELEAEIASLERRKSNiPARLLALrdaLAEALGLDEAEL 460
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
410-592 2.27e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 45.05  E-value: 2.27e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846   410 EELDRLDRRIIQLKLEQQALMKESDEAS------KKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAK 483
Cdd:TIGR02168  295 NEISRLEQQKQILRERLANLERQLEELEaqleelESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846   484 IAIE-----QARRVGDLARMSELQYGKIPELEKQLEaatQLEGKTMRL------LRNKVTDAEIAEVLARWTGIpvsrmm 552
Cdd:TIGR02168  375 EELEeqletLRSKVAQLELQIASLNNEIERLEARLE---RLEDRRERLqqeieeLLKKLEEAELKELQAELEEL------ 445
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 447157846   553 ESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLA 592
Cdd:TIGR02168  446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485
AAA_22 pfam13401
AAA domain;
600-698 4.08e-04

AAA domain;


Pssm-ID: 379165 [Multi-domain]  Cd Length: 129  Bit Score: 41.17  E-value: 4.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  600 SFLFL-GPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEK----HSVSRLVGAPPGYVGYEEG--GYLTEAVRRRP-Y 671
Cdd:pfam13401   6 GILVLtGESGTGKTTLLRRLLEQLPEVRDSVVFVDLPSGTSPkdllRALLRALGLPLSGRLSKEEllAALQQLLLALAvA 85
                          90       100
                  ....*....|....*....|....*..
gi 447157846  672 SVILLDEVEKAHPDVFNILLQVLDDGR 698
Cdd:pfam13401  86 VVLIIDEAQHLSLEALEELRDLLNLSS 112
RecA-like_CDC48_NLV2_r1-like cd19503
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ...
204-280 5.43e-04

first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410911 [Multi-domain]  Cd Length: 165  Bit Score: 41.51  E-value: 5.43e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 447157846 204 LIGEPGVGKTAIVEGLAQRIingevpeglkGRRVLALDMGALVagAKYRGEFEERLKGVLNDlAKQEGNVILFIDEL 280
Cdd:cd19503   39 LHGPPGTGKTLLARAVANEA----------GANFLSISGPSIV--SKYLGESEKNLREIFEE-ARSHAPSIIFIDEI 102
Sigma54_activat pfam00158
Sigma-54 interaction domain;
570-729 5.78e-04

Sigma-54 interaction domain;


Pssm-ID: 425491 [Multi-domain]  Cd Length: 168  Bit Score: 41.62  E-value: 5.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  570 VIGQNEAVDAVSNAIRRsragLADPNRPIgsfLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMsefmekhsvsrlvGA 649
Cdd:pfam00158   1 IIGESPAMQEVLEQAKR----VAPTDAPV---LITGESGTGKELFARAIHQLSPRADGPFVAVNC-------------AA 60
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  650 -PPGYV-----GYEEGGYlTEAVRRRP-------YSVILLDEVEKAHPDVFNILLQVLDDG---RLTDGQGRTVDFRntv 713
Cdd:pfam00158  61 iPEELLeselfGHEKGAF-TGADSDRKglfeladGGTLFLDEIGELPLELQAKLLRVLQEGefeRVGGTKPIKVDVR--- 136
                         170
                  ....*....|....*...
gi 447157846  714 VI--MTSNLGSDLIQERF 729
Cdd:pfam00158 137 IIaaTNRDLEEAVAEGRF 154
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
323-533 6.19e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 43.75  E-value: 6.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  323 IEKDAALERR----FQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLsHRYIADRQlpdkaidliDEaa 398
Cdd:COG4913   609 RAKLAALEAElaelEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASA-EREIAELE---------AE-- 676
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  399 ssiRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRlDMLNEELSDKERQYSELEEEwkAEKASLSGTQTIKAE 478
Cdd:COG4913   677 ---LERLDASSDDLAALEEQLEELEAELEELEEELDELKGEI-GRLEKELEQAEEELDELQDR--LEAAEDLARLELRAL 750
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 447157846  479 LEQAKIAIEQARRVGDLARmselqygkipELEKQLEAATQLEGKTMRLLRNKVTD 533
Cdd:COG4913   751 LEERFAAALGDAVERELRE----------NLEERIDALRARLNRAEEELERAMRA 795
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
401-592 1.10e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 42.75  E-value: 1.10e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846   401 IRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKrldmLNEELSDKERQYSELEEEWKAEKASLSGTQTIKA-EL 479
Cdd:TIGR02169  242 IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKK----IKDLGEEEQLRVKEKIGELEAEIASLERSIAEKErEL 317
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846   480 EQA--KIAIEQARRVGDLARMSELQyGKIPELEK---QLEAATQLEGKTMRLLRNKVtdAEIAEVLARWTGIPVSR---- 550
Cdd:TIGR02169  318 EDAeeRLAKLEAEIDKLLAEIEELE-REIEEERKrrdKLTEEYAELKEELEDLRAEL--EEVDKEFAETRDELKDYrekl 394
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 447157846   551 -MMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLA 592
Cdd:TIGR02169  395 eKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIN 437
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
391-491 1.24e-03

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 440951 [Multi-domain]  Cd Length: 297  Bit Score: 41.82  E-value: 1.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 391 IDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASK------KRLDMLNEELSDKERQYSELEEEWKA 464
Cdd:COG1340  169 LKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKeiveaqEKADELHEEIIELQKELRELRKELKK 248
                         90       100       110
                 ....*....|....*....|....*....|
gi 447157846 465 --EKASLSGTQTIKAEL-EQAKIAIEQARR 491
Cdd:COG1340  249 lrKKQRALKREKEKEELeEKAEEIFEKLKK 278
DnaX COG2812
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
570-619 1.32e-03

DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];


Pssm-ID: 442061 [Multi-domain]  Cd Length: 340  Bit Score: 41.72  E-value: 1.32e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 447157846 570 VIGQNEAVDAVSNAIRRSRAGLAdpnrpigsFLFLGPTGVGKTELCKALA 619
Cdd:COG2812   12 VVGQEHVVRTLKNALASGRLAHA--------YLFTGPRGVGKTTLARILA 53
COG1223 COG1223
Predicted ATPase, AAA+ superfamily [General function prediction only];
570-696 1.40e-03

Predicted ATPase, AAA+ superfamily [General function prediction only];


Pssm-ID: 440836 [Multi-domain]  Cd Length: 246  Bit Score: 41.41  E-value: 1.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 570 VIGQNEAVDAVSNAIR-------RSRAGLADPNRpigsFLFLGPTGVGKTELCKALANfmfdsdEAM-----VRID--MS 635
Cdd:COG1223    4 VVGQEEAKKKLKLIIKelrrrenLRKFGLWPPRK----ILFYGPPGTGKTMLAEALAG------ELKlplltVRLDslIG 73
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 447157846 636 EFMEKhSVSRLVGappgyvgyeeggyLTEAVRRRPySVILLDEVE---------KAHPD---VFNILLQVLDD 696
Cdd:COG1223   74 SYLGE-TARNLRK-------------LFDFARRAP-CVIFFDEFDaiakdrgdqNDVGEvkrVVNALLQELDG 131
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
98-375 1.79e-03

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 41.53  E-value: 1.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  98 AQKRGDNFISSELFVLAALESRG-TLADILKAAGATTANITQAIEqmrggESVNDQGAEDQRQALKKYTIDLTERAEQgK 176
Cdd:COG1222    3 DLLTIDENIKALLALIDALQERLgVELALLLQPVKALELLEEAPA-----LLLNDANLTQKRLGTPRGTAVPAESPDV-T 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 177 LDPVIGRDEEIRRTIQVLQRRTKNN---------PV----LIGEPGVGKTaivegLAQRIINGEVpeglkGRRVLALDMG 243
Cdd:COG1222   77 FDDIGGLDEQIEEIREAVELPLKNPelfrkygiePPkgvlLYGPPGTGKT-----LLAKAVAGEL-----GAPFIRVRGS 146
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 244 ALVAgaKYRGEFEERLKGVLnDLAKQEGNVILFIDELHTMvgAGKADGAMDAG--NMLKPAL--------ARGELHCVGA 313
Cdd:COG1222  147 ELVS--KYIGEGARNVREVF-ELAREKAPSIIFIDEIDAI--AARRTDDGTSGevQRTVNQLlaeldgfeSRGDVLIIAA 221
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 447157846 314 TtldeyrQYIEK-DAALER--RF-QKVFVAEPSVEDTIAILRGLKERYELHHHVqitDPAIVAAAT 375
Cdd:COG1222  222 T------NRPDLlDPALLRpgRFdRVIEVPLPDEEAREEILKIHLRDMPLADDV---DLDKLAKLT 278
PRK14970 PRK14970
DNA polymerase III subunits gamma and tau; Provisional
570-696 4.34e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184934 [Multi-domain]  Cd Length: 367  Bit Score: 40.24  E-value: 4.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 570 VIGQNEAVDAVSNAIRRsragladpNRPIGSFLFLGPTGVGKTELCKALANFMFDSDeamvrIDMSEFMEKHSVSRLVGA 649
Cdd:PRK14970  19 VVGQSHITNTLLNAIEN--------NHLAQALLFCGPRGVGKTTCARILARKINQPG-----YDDPNEDFSFNIFELDAA 85
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 447157846 650 PPGYVgyEEGGYLTEAVRRRP----YSVILLDEVEKAHPDVFNILLQVLDD 696
Cdd:PRK14970  86 SNNSV--DDIRNLIDQVRIPPqtgkYKIYIIDEVHMLSSAAFNAFLKTLEE 134
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
404-516 4.72e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 40.77  E-value: 4.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846  404 QIDSKPEELDRLDRRIIQLKLEQQALMKESDEaSKKRLDMLNEELSDKERQYSELE------------------------ 459
Cdd:TIGR04523 490 ELKSKEKELKKLNEEKKELEEKVKDLTKKISS-LKEKIEKLESEKKEKESKISDLEdelnkddfelkkenlekeideknk 568
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 447157846  460 --EEWKAEKASLSGTQTIKAELEQAKiaieqARRVGDLARMSELQYGKIPELEKQLEAA 516
Cdd:TIGR04523 569 eiEELKQTQKSLKKKQEEKQELIDQK-----EKEKKDLIKEIEEKEKKISSLEKELEKA 622
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
397-566 5.20e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.13  E-value: 5.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 397 AASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEAsKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIK 476
Cdd:COG4942   14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKAL-LKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 477 AELEQAKIAIEQ--ARRVGDLARMSELQYGKI---PELEKQLEAATQLEGKTMRLLRNKVtdAEIAEVLARWTGipVSRM 551
Cdd:COG4942   93 AELRAELEAQKEelAELLRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPARREQA--EELRADLAELAA--LRAE 168
                        170
                 ....*....|....*
gi 447157846 552 MESEREKLLRMEQEL 566
Cdd:COG4942  169 LEAERAELEALLAEL 183
FlhF COG1419
Flagellar biosynthesis GTPase FlhF [Cell motility];
458-612 6.83e-03

Flagellar biosynthesis GTPase FlhF [Cell motility];


Pssm-ID: 441029 [Multi-domain]  Cd Length: 361  Bit Score: 39.85  E-value: 6.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 458 LEEEwKAEKASLSGTQTIKAELEQAKIAIEQARRvgDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRnkvtDAEIA 537
Cdd:COG1419   49 VDED-EAEKAPAAAAAPAAASAAAEEEELEELRR--ELAELKELLEEQLSGLAGESARLPPELAELLERLL----EAGVS 121
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 447157846 538 EVLARwtgipvsRMMESEREKLlrmeqelhhrviGQNEAVDAVSNAIRRSragLADPNRPIGS----FLFLGPTGVGKT 612
Cdd:COG1419  122 PELAR-------ELLEKLPEDL------------SAEEAWRALLEALARR---LPVAEDPLLDeggvIALVGPTGVGKT 178
PRK04195 PRK04195
replication factor C large subunit; Provisional
570-684 7.06e-03

replication factor C large subunit; Provisional


Pssm-ID: 235250 [Multi-domain]  Cd Length: 482  Bit Score: 39.90  E-value: 7.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 570 VIGQNEAVDAVSNAIRRSRAGlaDPNRPIgsfLFLGPTGVGKTELCKALANFM-FDsdeaMVRIDMSEFMEKHSVSRLVG 648
Cdd:PRK04195  16 VVGNEKAKEQLREWIESWLKG--KPKKAL---LLYGPPGVGKTSLAHALANDYgWE----VIELNASDQRTADVIERVAG 86
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 447157846 649 AppgyvgyeegGYLTEAVRRRPYSVILLDEVEKAHP 684
Cdd:PRK04195  87 E----------AATSGSLFGARRKLILLDEVDGIHG 112
ExeA COG3267
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ...
203-283 7.35e-03

Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 442498 [Multi-domain]  Cd Length: 261  Bit Score: 39.00  E-value: 7.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 203 VLIGEPGVGKTAIVEGLAQR---------IINGEV-PEGLkgRRVLALDMGALVAGAkYRGEFEERLKGVLNDLAKQEGN 272
Cdd:COG3267   47 VLTGEVGTGKTTLLRRLLERlpddvkvayIPNPQLsPAEL--LRAIADELGLEPKGA-SKADLLRQLQEFLLELAAAGRR 123
                         90
                 ....*....|.
gi 447157846 273 VILFIDELHTM 283
Cdd:COG3267  124 VVLIIDEAQNL 134
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
410-515 7.43e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 40.05  E-value: 7.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846   410 EELDRLDRRIIQLKLEQQALMKESDEASK------KRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAK 483
Cdd:TIGR02169  695 SELRRIENRLDELSQELSDASRKIGEIEKeieqleQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDL 774
                           90       100       110
                   ....*....|....*....|....*....|..
gi 447157846   484 IAIEQArrVGDLARMseLQYGKIPELEKQLEA 515
Cdd:TIGR02169  775 HKLEEA--LNDLEAR--LSHSRIPEIQAELSK 802
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
391-568 8.03e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.04  E-value: 8.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846   391 IDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASK------KRLDMLNEELSDKERQYSELEEEWKA 464
Cdd:TIGR02168  304 KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEelesleAELEELEAELEELESRLEELEEQLET 383
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846   465 EKASLSGTQ----TIKAELEQAKIAIEQ-ARRVGDLARMSELQYGKIPELEKQlEAATQLEGKTMRLLRNKVTDAEIAEV 539
Cdd:TIGR02168  384 LRSKVAQLElqiaSLNNEIERLEARLERlEDRRERLQQEIEELLKKLEEAELK-ELQAELEELEEELEELQEELERLEEA 462
                          170       180
                   ....*....|....*....|....*....
gi 447157846   540 LARwtgipVSRMMESEREKLLRMEQELHH 568
Cdd:TIGR02168  463 LEE-----LREELEEAEQALDAAERELAQ 486
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
396-570 8.35e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 40.05  E-value: 8.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 396 EAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASK--KRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQ 473
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKevKELEELKEEIEELEKELESLEGSKRKLEEKIRELE 265
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447157846 474 TIKAELEQakiaieqarrvgdlarmselqygKIPELEKQLEAATQLEGK-----TMRLLRNKVTDA--EIAEVLARWTG- 545
Cdd:PRK03918 266 ERIEELKK-----------------------EIEELEEKVKELKELKEKaeeyiKLSEFYEEYLDElrEIEKRLSRLEEe 322
                        170       180       190
                 ....*....|....*....|....*....|..
gi 447157846 546 -------IPVSRMMESEREKLLRMEQELHHRV 570
Cdd:PRK03918 323 ingieerIKELEEKEERLEELKKKLKELEKRL 354
hslU PRK05201
ATP-dependent protease ATPase subunit HslU;
564-619 9.37e-03

ATP-dependent protease ATPase subunit HslU;


Pssm-ID: 235364 [Multi-domain]  Cd Length: 443  Bit Score: 39.29  E-value: 9.37e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 447157846 564 QELHHRVIGQNEAVDAVSNAI----RRSRagLADPNR----P--IgsfLFLGPTGVGKTELCKALA 619
Cdd:PRK05201  11 SELDKYIIGQDDAKRAVAIALrnrwRRMQ--LPEELRdevtPknI---LMIGPTGVGKTEIARRLA 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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