|
Name |
Accession |
Description |
Interval |
E-value |
| ModB |
COG4149 |
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ... |
3-216 |
1.12e-96 |
|
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443320 [Multi-domain] Cd Length: 223 Bit Score: 280.78 E-value: 1.12e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 3 DLTPFWISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGQFFANVLHL 82
Cdd:COG4149 5 DWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEELFGI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 83 PVVFTLTGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGA 162
Cdd:COG4149 85 SLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGEFGA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 447035837 163 TLMVAGYIPNKTNTLPLEIYFLVEQGRENEAWLWVLVLVAFSIVVISTINLLNK 216
Cdd:COG4149 165 TLMFAGNIPGKTQTLPLAIYDAVEAGDYAAAHALSLILLAISFVVLLLLNLLNR 218
|
|
| modB_ABC |
TIGR02141 |
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ... |
8-217 |
1.83e-89 |
|
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]
Pssm-ID: 273993 [Multi-domain] Cd Length: 208 Bit Score: 262.18 E-value: 1.83e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 8 WISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGqFFANVLHLPVVFT 87
Cdd:TIGR02141 1 WLSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIG-KLLELFGISLVFT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 88 LTGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGATLMVA 167
Cdd:TIGR02141 80 FTGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFA 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 447035837 168 GYIPNKTNTLPLEIYFLVEqGRENEAWLWVLVLVAFSIVVISTINLLNKD 217
Cdd:TIGR02141 160 GNIPGETQTIPLAIYDAVE-SDYELAHQLSLVLLAISLIVLLLVELLNKR 208
|
|
| modB |
PRK09421 |
molybdate ABC transporter permease subunit; |
9-206 |
3.27e-52 |
|
molybdate ABC transporter permease subunit;
Pssm-ID: 181841 Cd Length: 229 Bit Score: 168.18 E-value: 3.27e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 9 ISIRVAVISTIIVTVLGIFISkWLYRRKGSWVK-VLESLLILPIVLPPTVLGFILLIIFSPRGPIGQFFANVLHLPVVFT 87
Cdd:PRK09421 13 LSLKVSSVAVLFSLPFGILVA-WLLARCRFPGKsLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYEWFGISFAFS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 88 LTGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGATLMVA 167
Cdd:PRK09421 92 WRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFGATITFV 171
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 447035837 168 GYIPNKTNTLPLEIYFLVEQ-GRENEAWLWVLVLVAFSIV 206
Cdd:PRK09421 172 SNIPGETQTIPSAMYTLIQTpGGESAAARLCIISIAIALA 211
|
|
| ABC_perm1 |
NF038017 |
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ... |
10-177 |
1.64e-20 |
|
ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.
Pssm-ID: 411610 [Multi-domain] Cd Length: 184 Bit Score: 84.90 E-value: 1.64e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 10 SIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGqffanVLHLpvVFTLT 89
Cdd:NF038017 1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLG-----FLGL--LYTPT 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 90 GAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPlAKRSILAGIMMSFARALGEFGATLMVAGY 169
Cdd:NF038017 74 AMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLLKE-ARFALLAAVLAGFGRAISEVGAVMMVGGN 152
|
....*...
gi 447035837 170 IPNKTNTL 177
Cdd:NF038017 153 IRGYTRVL 160
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
7-208 |
4.29e-18 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 78.47 E-value: 4.29e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 7 FWISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGQFFanvlhlpvvF 86
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILP---------G 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 87 TLTGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGATLMV 166
Cdd:cd06261 72 LGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFL 151
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 447035837 167 AGYIPNKTNTLPLEIYFLVEQGreneAWLWVLVLVAFSIVVI 208
Cdd:cd06261 152 GGGEAPGPGTGLLLIFAILFPG----DLGVAAAVALILLLLS 189
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
25-169 |
6.90e-07 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 47.68 E-value: 6.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 25 GIFISKWLYRRKGSWV-KVLESLLILPIVLPPTVLGFILLIIFSPRGPIgqffanvlhlpvvFTLTGAVIASVIVSFPLM 103
Cdd:pfam00528 1 GIPLGIIAALRRGRRLdRLLRPLIDLLQALPSFVLAILLVVIAILSILG-------------HGILPAIILALLGWAGYA 67
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 447035837 104 YQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGATLMVAGY 169
Cdd:pfam00528 68 RLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW 133
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ModB |
COG4149 |
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ... |
3-216 |
1.12e-96 |
|
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443320 [Multi-domain] Cd Length: 223 Bit Score: 280.78 E-value: 1.12e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 3 DLTPFWISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGQFFANVLHL 82
Cdd:COG4149 5 DWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEELFGI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 83 PVVFTLTGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGA 162
Cdd:COG4149 85 SLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGEFGA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 447035837 163 TLMVAGYIPNKTNTLPLEIYFLVEQGRENEAWLWVLVLVAFSIVVISTINLLNK 216
Cdd:COG4149 165 TLMFAGNIPGKTQTLPLAIYDAVEAGDYAAAHALSLILLAISFVVLLLLNLLNR 218
|
|
| modB_ABC |
TIGR02141 |
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ... |
8-217 |
1.83e-89 |
|
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]
Pssm-ID: 273993 [Multi-domain] Cd Length: 208 Bit Score: 262.18 E-value: 1.83e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 8 WISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGqFFANVLHLPVVFT 87
Cdd:TIGR02141 1 WLSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIG-KLLELFGISLVFT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 88 LTGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGATLMVA 167
Cdd:TIGR02141 80 FTGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFA 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 447035837 168 GYIPNKTNTLPLEIYFLVEqGRENEAWLWVLVLVAFSIVVISTINLLNKD 217
Cdd:TIGR02141 160 GNIPGETQTIPLAIYDAVE-SDYELAHQLSLVLLAISLIVLLLVELLNKR 208
|
|
| modB |
PRK09421 |
molybdate ABC transporter permease subunit; |
9-206 |
3.27e-52 |
|
molybdate ABC transporter permease subunit;
Pssm-ID: 181841 Cd Length: 229 Bit Score: 168.18 E-value: 3.27e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 9 ISIRVAVISTIIVTVLGIFISkWLYRRKGSWVK-VLESLLILPIVLPPTVLGFILLIIFSPRGPIGQFFANVLHLPVVFT 87
Cdd:PRK09421 13 LSLKVSSVAVLFSLPFGILVA-WLLARCRFPGKsLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYEWFGISFAFS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 88 LTGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGATLMVA 167
Cdd:PRK09421 92 WRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFGATITFV 171
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 447035837 168 GYIPNKTNTLPLEIYFLVEQ-GRENEAWLWVLVLVAFSIV 206
Cdd:PRK09421 172 SNIPGETQTIPSAMYTLIQTpGGESAAARLCIISIAIALA 211
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
7-216 |
7.32e-50 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 163.38 E-value: 7.32e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 7 FWISIRVAVISTIIVTVLGIFISkWLYRRKGSWVK-VLESLLILPIVLPPTVLGFILLIIFSPRGPIGQFFANvLHLPVV 85
Cdd:COG0555 56 LKLSLGTALIAALINLVFGLPLA-WVLVRYRFPGKrLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAP-LGIKVA 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 86 FTLTGAVIASVIVSFPLMYQhTVQG-FRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGATL 164
Cdd:COG0555 134 FTPLGIVLAQTFVSLPFVVR-TVQPvLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVI 212
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 447035837 165 MVAGYIPNKTNTLPLEIYFLVEQGRENEAWLWVLVLVAFSIVVISTINLLNK 216
Cdd:COG0555 213 FIAGNLPMKTEILPLLIYLKLEEGDYAGATAIALVLLLISFLLLLLINLLQR 264
|
|
| Mo_ABC_porter |
TIGR01581 |
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ... |
8-207 |
5.82e-38 |
|
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.
Pssm-ID: 130643 Cd Length: 225 Bit Score: 131.37 E-value: 5.82e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 8 WISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGQFFANVLhLPVVFT 87
Cdd:TIGR01581 24 RLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGPYLEAAG-IQVIFS 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 88 LTGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGATLMVA 167
Cdd:TIGR01581 103 TLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWARALGEFGATLMFA 182
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 447035837 168 GYIPNKTNTLPLEIYFLVEQGRENEA---WLWVLVLVAFSIVV 207
Cdd:TIGR01581 183 GSIQGKTRTLPLAIYLNIQSDNIEAAvasALLLLVIAFLLLLV 225
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
4-221 |
4.89e-32 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 117.13 E-value: 4.89e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 4 LTPFWISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPrgpigqffanvlhLP 83
Cdd:COG1177 60 LDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSA-------------LG 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 84 VVFTLTGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGAT 163
Cdd:COG1177 127 LSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVIT 206
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 447035837 164 LMVAGyipNKTNTLPLEIYFLVEQGRENEAWLWVLVLVAFSIVVISTINLLNKDKYKE 221
Cdd:COG1177 207 LFLAG---PGVTTLPVYIYSMIRRGISPEINALSTLLILLSLLLLLLAERLRRRGERR 261
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
4-218 |
1.32e-29 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 114.87 E-value: 1.32e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 4 LTPFWISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIifsprgpigqFFANVLHLP 83
Cdd:COG1178 337 LRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLL----------LFNRPLPLL 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 84 VVFTLTGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGAT 163
Cdd:COG1178 407 LYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSAT 486
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 447035837 164 LMVAgyiPNKTNTLPLEIYFLVEQGRENEAWLWVLVLVAFSIVVISTINLLNKDK 218
Cdd:COG1178 487 LLLR---PPGFETLAVLIYQLASSGRYGEAAALALLLVLVSLLPVLLLERLLGRR 538
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
4-208 |
1.88e-29 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 114.49 E-value: 1.88e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 4 LTPFWISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGQFFANVLHLP 83
Cdd:COG1178 53 WRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALFGLE 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 84 V--VFTLTGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFG 161
Cdd:COG1178 133 PpdIYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFG 212
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 447035837 162 ATLMVAGYIpnktNTLPLEIY-FLVEQGRENEAWLWVLVLVAFSIVVI 208
Cdd:COG1178 213 TPLVLGGGY----TTLTTAIYqAWLGDFDLGAAAALALVLLLLVLLLL 256
|
|
| cysT |
CHL00187 |
sulfate transport protein; Provisional |
9-187 |
1.27e-28 |
|
sulfate transport protein; Provisional
Pssm-ID: 214388 [Multi-domain] Cd Length: 237 Bit Score: 107.41 E-value: 1.27e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 9 ISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGQFFaNVLHLPVVFTL 88
Cdd:CHL00187 59 LTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLL-SHLGIQIVFTK 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 89 TGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGATLMVAG 168
Cdd:CHL00187 138 LGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVIISS 217
|
170
....*....|....*....
gi 447035837 169 YIPNKTNTLPLEIYFLVEQ 187
Cdd:CHL00187 218 NIPFKDLVASVLIFQSLEQ 236
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
4-189 |
1.44e-22 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 92.52 E-value: 1.44e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 4 LTPFWISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGQFFANV---- 79
Cdd:COG1176 66 LKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALglid 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 80 LHLPVVFTLTGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGE 159
Cdd:COG1176 146 EPLRLLYTEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGA 225
|
170 180 190
....*....|....*....|....*....|
gi 447035837 160 FGATLMVAGyipNKTNTLPLEIYFLVEQGR 189
Cdd:COG1176 226 FVTPALLGG---GKVLMIGNLIYQQFLSAL 252
|
|
| ABC_perm1 |
NF038017 |
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ... |
10-177 |
1.64e-20 |
|
ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.
Pssm-ID: 411610 [Multi-domain] Cd Length: 184 Bit Score: 84.90 E-value: 1.64e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 10 SIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGqffanVLHLpvVFTLT 89
Cdd:NF038017 1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLG-----FLGL--LYTPT 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 90 GAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPlAKRSILAGIMMSFARALGEFGATLMVAGY 169
Cdd:NF038017 74 AMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLLKE-ARFALLAAVLAGFGRAISEVGAVMMVGGN 152
|
....*...
gi 447035837 170 IPNKTNTL 177
Cdd:NF038017 153 IRGYTRVL 160
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
7-208 |
4.29e-18 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 78.47 E-value: 4.29e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 7 FWISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGQFFanvlhlpvvF 86
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILP---------G 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 87 TLTGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGATLMV 166
Cdd:cd06261 72 LGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFL 151
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 447035837 167 AGYIPNKTNTLPLEIYFLVEQGreneAWLWVLVLVAFSIVVI 208
Cdd:cd06261 152 GGGEAPGPGTGLLLIFAILFPG----DLGVAAAVALILLLLS 189
|
|
| PRK10971 |
PRK10971 |
sulfate/thiosulfate ABC transporter permease CysT; |
9-214 |
5.97e-18 |
|
sulfate/thiosulfate ABC transporter permease CysT;
Pssm-ID: 182873 Cd Length: 277 Bit Score: 80.18 E-value: 5.97e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 9 ISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGQFFANvLHLPVVFTL 88
Cdd:PRK10971 62 VTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLAK-FDIKVTYTW 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 89 TGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGATLMVAG 168
Cdd:PRK10971 141 LGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAG 220
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 447035837 169 YIPNKTNTLPLEIYFLVEQGRENEAWLWVLVLVAFSIVVISTINLL 214
Cdd:PRK10971 221 NIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINTL 266
|
|
| cysW |
PRK11602 |
sulfate/thiosulfate ABC transporter permease CysW; |
4-184 |
1.12e-14 |
|
sulfate/thiosulfate ABC transporter permease CysW;
Pssm-ID: 183225 Cd Length: 283 Bit Score: 70.94 E-value: 1.12e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 4 LTPFWISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGQFFaNVLHLP 83
Cdd:PRK11602 63 LHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWL-DEHNLQ 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 84 VVFTLTGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGAT 163
Cdd:PRK11602 142 LMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAV 221
|
170 180
....*....|....*....|.
gi 447035837 164 LMVAGYIPNKTNTLPLEIYFL 184
Cdd:PRK11602 222 SVVSGSIRGETLSLPLQIELL 242
|
|
| potC |
PRK09500 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
7-220 |
5.05e-13 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 236542 [Multi-domain] Cd Length: 256 Bit Score: 66.16 E-value: 5.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 7 FWISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSprgpigqffanVLHLPVVF 86
Cdd:PRK09500 59 AQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFM-----------LLGIQLGF 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 87 -TLtgaVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGATLM 165
Cdd:PRK09500 128 wSL---LFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSF 204
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 447035837 166 VAGyiPNkTNTLPLEIYFLVEQGRENEAWLWVLVLVAFSIVVISTINLLNKDKYK 220
Cdd:PRK09500 205 VTG--PS-YEILPLKIYSMVKVGVSPEVNALATILLVLSLVLVILSQLLARDKTK 256
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
7-157 |
3.51e-11 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 60.93 E-value: 3.51e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 7 FWISIRVAVISTIIVTVLGIFI------SKWLYRrkgswvkVLESLLILPIVLPPTVLGFILLIIFSprgpigqffanvl 80
Cdd:COG0600 63 LLASLLRVLLGFALAALLGVPLglllglSRLLRR-------LLDPLLVFLRPIPPLALAPLLILWFG------------- 122
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 447035837 81 hlpvvFTLTGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARAL 157
Cdd:COG0600 123 -----IGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAW 194
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
7-185 |
4.11e-11 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 61.62 E-value: 4.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 7 FWISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGQFFanvlHLPVVF 86
Cdd:TIGR03262 56 LGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLL----GGFSIY 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 87 TLTGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGATLMV 166
Cdd:TIGR03262 132 GFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVI 211
|
170
....*....|....*....
gi 447035837 167 AGyipnKTNTLPLEIYFLV 185
Cdd:TIGR03262 212 GG----DYNVLATDIYKQV 226
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
7-208 |
7.55e-11 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 60.15 E-value: 7.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 7 FWISIRV----AVISTIIVTVLGIFISkWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPR-GPIGQFFaNVLH 81
Cdd:COG1175 74 FWNALGNtllfTVVSVPLQLVLGLLLA-LLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDyGLLNALL-GALG 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 82 LPVVFTLTGAVIASVIVSFPLMYQHT-------VQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFA 154
Cdd:COG1175 152 LEPINWLGDPSLALPAVIIVTVWKGTgfnmlifLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTI 231
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 447035837 155 RALGEFG-ATLMVAGYIPNKTNTLPLEIYflvEQGREN--------EAWLWVLVLVAFSIVVI 208
Cdd:COG1175 232 GALQVFDlVYVLTGGGPGNSTTTLVLYIY---QTAFQQfdfgyasaIAVVLFLIILVLTLLQL 291
|
|
| PRK15050 |
PRK15050 |
2-aminoethylphosphonate transport system permease PhnU; Provisional |
8-182 |
1.86e-09 |
|
2-aminoethylphosphonate transport system permease PhnU; Provisional
Pssm-ID: 237888 [Multi-domain] Cd Length: 296 Bit Score: 56.17 E-value: 1.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 8 WISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGQFFANVLHLPV--- 84
Cdd:PRK15050 76 LTTLQIAFASTAGCLVLGVLLALVLAFVPFPGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGSVNIALQRLFGLEAppl 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 85 --VFTLTGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGA 162
Cdd:PRK15050 156 dfLYSPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGI 235
|
170 180
....*....|....*....|
gi 447035837 163 TLMVAGyipNKTNTLPLEIY 182
Cdd:PRK15050 236 VLFTGA---KDVVTLPVLIY 252
|
|
| phosphate_pstC |
TIGR02138 |
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ... |
4-189 |
1.04e-07 |
|
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]
Pssm-ID: 273992 [Multi-domain] Cd Length: 295 Bit Score: 51.11 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 4 LTPFWISIRVAVISTIIVTVLGIFISKWLYRRKGSWVK-VLESLLILPIVLPPTVLGFILLIIFSP--RGPIGQFFANVL 80
Cdd:TIGR02138 62 LPLIVGTLITSLIALLIAVPVGIGIAIFLSEIAPKRVRsVLKPVVELLAGIPSVVYGFWGLFVLVPflKPHFQPFLGSNL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 81 HLPVVFT---LTGAVIASVIVsFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARAL 157
Cdd:TIGR02138 142 GLIPLFGgpiLTAGIVLAIMI-LPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRAL 220
|
170 180 190
....*....|....*....|....*....|..
gi 447035837 158 GEFGATLMVAGyipnktNTLPLEIYFLVEQGR 189
Cdd:TIGR02138 221 GETMAVTMVIG------NVFPISPLSLFDPGT 246
|
|
| PstC |
COG0573 |
ABC-type phosphate transport system, permease component [Inorganic ion transport and ... |
4-172 |
1.26e-07 |
|
ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440338 [Multi-domain] Cd Length: 303 Bit Score: 50.86 E-value: 1.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 4 LTPFWISIRVAVISTIIVTVLG----IFISKWLYRRKGSWVK-VLESLLILPIVlpptVLGFILLIIFSPrgpigqFFAN 78
Cdd:COG0573 76 LPLIVGTLLVSLIALLIAVPLGlgiaIFLSEYAPPRLRRILKpAIELLAGIPSV----VYGFWGLFVLVP------LLRD 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 79 VLHLPVvfTLTGAVIASVIVSF---PLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFAR 155
Cdd:COG0573 146 LFPWPP--SGFSLLTAGIVLAImilPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGR 223
|
170
....*....|....*..
gi 447035837 156 ALGEFGATLMVAGYIPN 172
Cdd:COG0573 224 ALGETMAVLMVAGNAPQ 240
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
25-169 |
6.90e-07 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 47.68 E-value: 6.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 25 GIFISKWLYRRKGSWV-KVLESLLILPIVLPPTVLGFILLIIFSPRGPIgqffanvlhlpvvFTLTGAVIASVIVSFPLM 103
Cdd:pfam00528 1 GIPLGIIAALRRGRRLdRLLRPLIDLLQALPSFVLAILLVVIAILSILG-------------HGILPAIILALLGWAGYA 67
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 447035837 104 YQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGATLMVAGY 169
Cdd:pfam00528 68 RLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW 133
|
|
| YnjC |
COG4135 |
ABC-type uncharacterized transport system YnjBCD, permease component [General function ... |
4-168 |
7.34e-07 |
|
ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];
Pssm-ID: 443310 [Multi-domain] Cd Length: 564 Bit Score: 49.10 E-value: 7.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 4 LTPFWISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGQFFAnvlhlp 83
Cdd:COG4135 355 LEPLGNTLLLALASALIALVLVLACLEAEARRGRRPGRRALWLLYLPLLVPQIAFLFGLQVLLLRLGLDGTWLA------ 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 84 vvftltgAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGAT 163
Cdd:COG4135 429 -------VIWAHLVFVLPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGFAVSVAQYLPT 501
|
....*
gi 447035837 164 LMVAG 168
Cdd:COG4135 502 LLIGA 506
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
7-158 |
2.47e-06 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 46.98 E-value: 2.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 7 FWISIRVAVISTIIVTVLGIFISKWLYRRKGSWV-KVLESLLILPIVLPPTVLGFILLIIFS------P---RGPIGQFF 76
Cdd:COG0601 95 LPVTLELALLALLLALLIGIPLGILAALRRGSWLdRLITVLALLGISIPSFWLGLLLILLFAvklgwlPvsgRVSPWEDF 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 77 ANVLH---LPvVFTLTGAVIASVIvsfplmyqhtvqgfRGIDTKMIN--------TARTMGASETKIFLKLILPLAKRSI 145
Cdd:COG0601 175 LDALRhliLP-ALTLALGSLAGIA--------------RLTRSSMLEvlgqdyvrTARAKGLSERRVLLRHALRNALIPV 239
|
170
....*....|...
gi 447035837 146 LAGIMMSFARALG 158
Cdd:COG0601 240 VTVLGLQLGGLLG 252
|
|
| OpuBB |
COG1174 |
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ... |
11-149 |
7.91e-06 |
|
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440787 [Multi-domain] Cd Length: 212 Bit Score: 45.05 E-value: 7.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 11 IRVAVISTIIVTVLGIFISKWLYRRkGSWVKVLESLLILPIVLPPTVLgFILLIIFSPRGPigqffanvlhlpvvftlTG 90
Cdd:COG1174 24 LLLVLLALLIALLIAVPLGILITRR-RRLAGLVLGVANILQTIPSLAL-LALLIPLLGIGP-----------------AP 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 447035837 91 AVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGI 149
Cdd:COG1174 85 AIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGI 143
|
|
| potB |
PRK09497 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
7-160 |
3.13e-05 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 181910 Cd Length: 285 Bit Score: 43.91 E-value: 3.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 7 FWISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGQF--FANVLHLP- 83
Cdd:PRK09497 65 LLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFllWLGVIDTPi 144
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 447035837 84 -VVFTLTGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEF 160
Cdd:PRK09497 145 rIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMF 222
|
|
| PRK10683 |
PRK10683 |
putrescine transporter subunit: membrane component of ABC superfamily; Provisional |
10-160 |
4.14e-05 |
|
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Pssm-ID: 182646 Cd Length: 317 Bit Score: 43.55 E-value: 4.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 10 SIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGQF--FANVLHLPVVFT 87
Cdd:PRK10683 102 SLQVAAISTLCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFllWLGVIDQPLTIL 181
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 447035837 88 LT-GAVIASVIVSF-PLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEF 160
Cdd:PRK10683 182 HTnLAVYIGIVYAYlPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEF 256
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
4-188 |
2.54e-04 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 40.85 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 4 LTPFWISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSprgpigqffanvlHLP 83
Cdd:COG0395 73 GRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFR-------------QLG 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 84 VVFTLTGAVIASVIVSFP----LMYQHtvqgFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGE 159
Cdd:COG0395 140 LLNTYWGLILPYLAFGLPfgifLLRQF----FRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWND 215
|
170 180
....*....|....*....|....*....
gi 447035837 160 FGATLMVAGyiPNKTNTLPLEIYFLVEQG 188
Cdd:COG0395 216 FLWPLILLT--SPDLRTLPVGLASFQGQY 242
|
|
| thiP |
TIGR01253 |
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ... |
14-182 |
7.26e-04 |
|
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]
Pssm-ID: 130320 [Multi-domain] Cd Length: 519 Bit Score: 39.90 E-value: 7.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 14 AVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGqFFANVLHLPVVFT---LTG 90
Cdd:TIGR01253 56 AFLSALLSIFFAIFLARALFRKPFLGKKALLKLCALTFILPALVAIFGIIGIYGRQGWLA-TLANLFGLEWQFHiygLQG 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 91 AVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFgATLMVAGYI 170
Cdd:TIGR01253 135 ILIAHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCFASF-ATVLSLGGG 213
|
170
....*....|..
gi 447035837 171 PNKTnTLPLEIY 182
Cdd:TIGR01253 214 PQAT-TIELAIY 224
|
|
| thiP |
PRK09433 |
thiamine transporter membrane protein; Reviewed |
14-157 |
1.57e-03 |
|
thiamine transporter membrane protein; Reviewed
Pssm-ID: 181853 [Multi-domain] Cd Length: 525 Bit Score: 39.05 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 14 AVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGQFFAnVLHLPVVFT---LTG 90
Cdd:PRK09433 53 AFLSALLSVLPAIPLARALYRRRFPGRGLLLRLCAMTLVLPVLVAVFGLLSVYGRSGWLAQLLQ-ALGLEWPFSiygLQG 131
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 447035837 91 AVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSIL---AGIMM----SFARAL 157
Cdd:PRK09433 132 ILLAHVFFNLPLATRLLLQALESIPAEQRQLAAQLGMRGWQFFRLVEWPYLRRQLPpvaALIFMlcftSFATVL 205
|
|
| ssuC |
PRK11365 |
aliphatic sulfonate ABC transporter permease SsuC; |
100-170 |
1.97e-03 |
|
aliphatic sulfonate ABC transporter permease SsuC;
Pssm-ID: 183100 Cd Length: 263 Bit Score: 38.38 E-value: 1.97e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 447035837 100 FPLmYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMsfarALGEFGATLMVAGYI 170
Cdd:PRK11365 137 FPI-YINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRF----ALGLMWLTLIVAETI 202
|
|
| thiP |
PRK09433 |
thiamine transporter membrane protein; Reviewed |
7-221 |
3.63e-03 |
|
thiamine transporter membrane protein; Reviewed
Pssm-ID: 181853 [Multi-domain] Cd Length: 525 Bit Score: 37.89 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 7 FWISIRVAVISTIIVTVLGIFI----SKWLYRRKGSWVKVLESLLILPIVLPPTVLG---FILLIifsprgpigQFFANV 79
Cdd:PRK09433 321 LWTSLRIALAAALLAVVLTMMLlwssRELRLRQRKLAAQALELSGMLILAMPGIVLAtglFLLLR---------NTTDLP 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 80 LHLPVVFTLTGAVIA---SVIVSFPLMYQHTVQGFRgidtkminTARTMGASETKIFLKLILPLAKRSILAGIMMSFARA 156
Cdd:PRK09433 392 ASALGIVILTNALMAlpyALRVLEPPMRDIAARYGR--------LCQSLGIRGWSRLRLIELRALRRPLAQAFAFACALS 463
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 447035837 157 LGEFGAtlmVAGYIPNKTNTLPLEIYFLVEQGRENEAWLWVLVLVAFSIVVISTINLLNKDKYKE 221
Cdd:PRK09433 464 LGDFGV---IALFGSQDFRTLPFLLYQQLGSYRSQDAAVTALLLLLLCLLLFTLIERLPGRHAKT 525
|
|
| MalG |
COG3833 |
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ... |
5-192 |
4.02e-03 |
|
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];
Pssm-ID: 443045 [Multi-domain] Cd Length: 282 Bit Score: 37.44 E-value: 4.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 5 TPFWI----SIRVAVISTIIVTVLGIFIS------KWLYRRKGswvkvLESLLILPIVlpPTVLGFI-LLIIFSPRGPIG 73
Cdd:COG3833 69 TPFLRwflnSLIVAVVTAIISVFLAALAAyafsrfRFKGRKAG-----LLALLLLQMF--PAFLALVaLYLLLSALGLLN 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447035837 74 QFFANVLhlpvvFTLTGAVIASVIvsfpLMYQHtvqgFRGIDTKMINTARTMGASETKIFLKLILPLAKrSILAGIMM-S 152
Cdd:COG3833 142 TLLGLIL-----VYLGGAIPFNTW----LMKGY----FDTIPKELDEAAKIDGASHFQIFFRIILPLAK-PILAVVALlS 207
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 447035837 153 FARALGEFgatlMVAGYIPNKTN--TLPLEIYFLVEQGRENE 192
Cdd:COG3833 208 FIGPWNDF----ILASVLLRSPEnyTLAVGLYSFVSDQRNTN 245
|
|
| PRK10952 |
PRK10952 |
proline/glycine betaine ABC transporter permease ProW; |
92-157 |
5.41e-03 |
|
proline/glycine betaine ABC transporter permease ProW;
Pssm-ID: 236805 Cd Length: 355 Bit Score: 37.38 E-value: 5.41e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 447035837 92 VIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARAL 157
Cdd:PRK10952 212 VVVTIIFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLAL 277
|
|
| |
