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Conserved domains on  [gi|446964867|ref|WP_001042123|]
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MULTISPECIES: protein YebF [Salmonella]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YebF super family cl23934
YebF-like protein; The YebF-like protein family appears to be a group of colicin immunity ...
 25-117 5.05e-60

YebF-like protein; The YebF-like protein family appears to be a group of colicin immunity proteins. As well as YebF the family includes cmi, the colicin M immunity protein. This domain family is found in bacteria, and is approximately 80 amino acids in length. The alignment contains two conserved cysteine residues that form a disulphide bond in the solved structure.


The actual alignment was detected with superfamily member PRK13680:

Pssm-ID: 474099  Cd Length: 117  Bit Score: 179.91  E-value: 5.05e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446964867  25 ESKSVKFPQCEGLDAAGIAASVKRDYQQNRIVRWADDQKKVGQADPVAWVNVQDVVGQNDKWTVPLTVRGKSADIHYQVI 104
Cdd:PRK13680  25 TSRSVKFPKCEGLDAAGIAASVKRDYLQNRIARWADDQKQLGQADPVAWVNVQDITGKDDKWQVPLTVRGKSADIHYQVV 104

                         90
                 ....*....|...
gi 446964867 105 VDCKAGKAEYKPR 117
Cdd:PRK13680 105 VDCKAGTAEYQER 117
 
Name Accession Description Interval E-value
PRK13680 PRK13680
hypothetical protein; Provisional
 25-117 5.05e-60

hypothetical protein; Provisional


Pssm-ID: 184237  Cd Length: 117  Bit Score: 179.91  E-value: 5.05e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446964867  25 ESKSVKFPQCEGLDAAGIAASVKRDYQQNRIVRWADDQKKVGQADPVAWVNVQDVVGQNDKWTVPLTVRGKSADIHYQVI 104
Cdd:PRK13680  25 TSRSVKFPKCEGLDAAGIAASVKRDYLQNRIARWADDQKQLGQADPVAWVNVQDITGKDDKWQVPLTVRGKSADIHYQVV 104

                         90
                 ....*....|...
gi 446964867 105 VDCKAGKAEYKPR 117
Cdd:PRK13680 105 VDCKAGTAEYQER 117
YebF_not_Cmi NF041240
protein YebF; This HMM identifies the exported protein YebF from E. coli, Salmonella, ...
 24-114 7.45e-60

protein YebF; This HMM identifies the exported protein YebF from E. coli, Salmonella, Providencia, Xenorhabdus, and other closely related lineages. It excludes the colicin M immunity protein Cmi, a YebF homolog. The related model from Pfam, PF13995, covers both families.


Pssm-ID: 469142  Cd Length: 114  Bit Score: 179.32  E-value: 7.45e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446964867  24 TESKSVKFPQCEGLDAAGIAASVKRDYQQNRIVRWADDQKKVGQADPVAWVNVQDVVGQNDKWTVPLTVRGKSADIHYQV 103
Cdd:NF041240  23 DEQRTAKFPSCEGLDADQIAAQVKRDFLQNRIPRWADDKKLLGTADPVAWVNPNDITGKDDKWQVPLTVRGKKTDKHYNV 102

                         90
                 ....*....|.
gi 446964867 104 IVDCKAGKAEY 114
Cdd:NF041240 103 TVDCKAGTITY 113
YebF pfam13995
YebF-like protein; The YebF-like protein family appears to be a group of colicin immunity ...
 27-115 3.08e-48

YebF-like protein; The YebF-like protein family appears to be a group of colicin immunity proteins. As well as YebF the family includes cmi, the colicin M immunity protein. This domain family is found in bacteria, and is approximately 80 amino acids in length. The alignment contains two conserved cysteine residues that form a disulphide bond in the solved structure.


Pssm-ID: 433634  Cd Length: 89  Bit Score: 149.12  E-value: 3.08e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446964867   27 KSVKFPQCEGLDAAGIAASVKRDYQQNRIVRWADDQKKVGQADPVAWVNVQDVVGQNDKWTVPLTVRGKSADIHYQVIVD 106
Cdd:pfam13995   1 RSVKFPACEDLTKAQIAAQVKRDYLQNRIPRWADDKKQLGTSKPVAWVNVDDITGDKDKWNVPLTVRGSKADLSYQVTVD 80


                  ....*....
gi 446964867  107 CKAGKAEYK 115
Cdd:pfam13995  81 CQAGTISYS 89
 
Name Accession Description Interval E-value
PRK13680 PRK13680
hypothetical protein; Provisional
 25-117 5.05e-60

hypothetical protein; Provisional


Pssm-ID: 184237  Cd Length: 117  Bit Score: 179.91  E-value: 5.05e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446964867  25 ESKSVKFPQCEGLDAAGIAASVKRDYQQNRIVRWADDQKKVGQADPVAWVNVQDVVGQNDKWTVPLTVRGKSADIHYQVI 104
Cdd:PRK13680  25 TSRSVKFPKCEGLDAAGIAASVKRDYLQNRIARWADDQKQLGQADPVAWVNVQDITGKDDKWQVPLTVRGKSADIHYQVV 104

                         90
                 ....*....|...
gi 446964867 105 VDCKAGKAEYKPR 117
Cdd:PRK13680 105 VDCKAGTAEYQER 117
YebF_not_Cmi NF041240
protein YebF; This HMM identifies the exported protein YebF from E. coli, Salmonella, ...
 24-114 7.45e-60

protein YebF; This HMM identifies the exported protein YebF from E. coli, Salmonella, Providencia, Xenorhabdus, and other closely related lineages. It excludes the colicin M immunity protein Cmi, a YebF homolog. The related model from Pfam, PF13995, covers both families.


Pssm-ID: 469142  Cd Length: 114  Bit Score: 179.32  E-value: 7.45e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446964867  24 TESKSVKFPQCEGLDAAGIAASVKRDYQQNRIVRWADDQKKVGQADPVAWVNVQDVVGQNDKWTVPLTVRGKSADIHYQV 103
Cdd:NF041240  23 DEQRTAKFPSCEGLDADQIAAQVKRDFLQNRIPRWADDKKLLGTADPVAWVNPNDITGKDDKWQVPLTVRGKKTDKHYNV 102

                         90
                 ....*....|.
gi 446964867 104 IVDCKAGKAEY 114
Cdd:NF041240 103 TVDCKAGTITY 113
YebF pfam13995
YebF-like protein; The YebF-like protein family appears to be a group of colicin immunity ...
 27-115 3.08e-48

YebF-like protein; The YebF-like protein family appears to be a group of colicin immunity proteins. As well as YebF the family includes cmi, the colicin M immunity protein. This domain family is found in bacteria, and is approximately 80 amino acids in length. The alignment contains two conserved cysteine residues that form a disulphide bond in the solved structure.


Pssm-ID: 433634  Cd Length: 89  Bit Score: 149.12  E-value: 3.08e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446964867   27 KSVKFPQCEGLDAAGIAASVKRDYQQNRIVRWADDQKKVGQADPVAWVNVQDVVGQNDKWTVPLTVRGKSADIHYQVIVD 106
Cdd:pfam13995   1 RSVKFPACEDLTKAQIAAQVKRDYLQNRIPRWADDKKQLGTSKPVAWVNVDDITGDKDKWNVPLTVRGSKADLSYQVTVD 80


                  ....*....
gi 446964867  107 CKAGKAEYK 115
Cdd:pfam13995  81 CQAGTISYS 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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