|
Name |
Accession |
Description |
Interval |
E-value |
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
10-380 |
0e+00 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 592.16 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 10 FPFQR-FTADELRHFFVWCAAHKVSDVDLTGGSPVSVSRFGRRVRCSSATLPTTLMSSLIDELFGREVIPRVLAGNPVDR 88
Cdd:TIGR02525 1 FNFGPgLTADTLRRFFVHCSRHEVSDIHLQGGSPIVVERHGRQVPASSFPLDNLELERLVDEVFGPEIKPTVKSGAPVDR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 89 TIQINGDASGRYGLKRGERIRLRSHLIQGTSGAEEKAVSITMRVIPTEIPDILSMNIEPDLLEAMVCKSGLGFVCGETGS 168
Cdd:TIGR02525 81 AIQLRGDENGRYGLGRGERVRFRCNFIQATIGKLETAISLTLRVIPSDIPDLKQMGIEPDLFNSLLPAAGLGLICGETGS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 169 GKSTLCSALYRYIMDNFPDAKIVTYEDPVEYILGNENDLLPPHQAEIGRDVVSFAAGLRSAVRRNPEIIGVGEIRDNETA 248
Cdd:TIGR02525 161 GKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIGVGEIRDLETF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 249 DAAVQAGNTGHYCLSTMHTKSPGETLARLLGLFPPVIRDSMAWAVLSLLQFILVQVLVRTNDGGRKAVREYIVINDELRD 328
Cdd:TIGR02525 241 QAAVLAGQSGHFCLGTLHVKSPGEAISRCLQMYPPEMREAAAFDLLSILQYIIVQRLLRTTDGKRQAVREYIVFDDSLRR 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 446947719 329 NLSGMPHAEWGHHIDAIIRQEKRRIRDQILEMYIRNEVDRREAILFIPPGEL 380
Cdd:TIGR02525 321 KLYDVDYSKWGRYIDDILRAEQRRIADQAWAMHQEGRIDEREAAEVIGAMEF 372
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
147-323 |
4.92e-102 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 299.29 E-value: 4.92e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 147 PDLLEAMVCKSGLGFVCGETGSGKSTLCSALYRYIMDNF-PDAKIVTYEDPVEYILGN-ENDLLPPHQAEIGRDVVSFAA 224
Cdd:cd19516 1 PDLVEALFPREGLVYVAGATGSGKSTLLAAIYRYILENDpPDRKIITYEDPIEFVYDGiKSKHSIIVQSQIPRHFKSFAK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 225 GLRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARLLGLFPPVIRDSMAWAVLSLLQFILVQV 304
Cdd:cd19516 81 AVREALRRKPSLIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLISLFPPEERDAAAYDLLSTLRFIIVQR 160
|
170
....*....|....*....
gi 446947719 305 LVRTNDGGRKAVREYIVIN 323
Cdd:cd19516 161 LVRTTDGKRVAVREYLVFD 179
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
16-376 |
2.79e-79 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 246.93 E-value: 2.79e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 16 TADELRHFFVWCAAHKVSDVDLTGGSPVSVSRFGRRVRCSSATLPTTLMSSLIDELFGREVIPRVLAGNPVDRTIQINGD 95
Cdd:COG2805 1 MAMDLDELLKLAVEQGASDLHLTVGSPPMLRIDGELVPLDDPPLTPEDLEALLKEILTEEQRERLEEEGELDFSYSLPGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 96 AsgryglkrgeriRLRSHLIQGTSGaeekaVSITMRVIPTEIPDILSMNIEPDLLEAMVCKSGLGFVCGETGSGKSTLCS 175
Cdd:COG2805 81 G------------RFRVNIFRQRGG-----VAAVLRLIPSEIPTLEELGLPPVLKELAELPRGLVLVTGPTGSGKSTTLA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 176 ALYRYIMDNFPDaKIVTYEDPVEYILGNENDLlpPHQAEIGRDVVSFAAGLRSAVRRNPEIIGVGEIRDNETADAAVQAG 255
Cdd:COG2805 144 AMIDYINETRAK-HIITIEDPIEFVHKHKKSL--INQREVGRDTPSFANALRAALREDPDVILVGEMRDLETIEAALTAA 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 256 NTGHYCLSTMHTKSPGETLARLLGLFPPVIRDSMAWAVLSLLQFILVQVLVRTNDG-GRKAVREYIVINDELRDNLSGMP 334
Cdd:COG2805 221 ETGHLVFATLHTNSAAQTIDRIIDVFPPEEQAQIRSQLAESLRGVISQRLLPRADGgGRVAAREILVNTPAVRNLIREGK 300
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 446947719 335 HAEWGHHIDAIIRQEKRRIRDQILEMYIRNEVDRREAILFIP 376
Cdd:COG2805 301 THQIPSLIQTGKKLGMQTMDQSLAELVKEGLITEETALAYAS 342
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
147-307 |
1.37e-34 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 128.56 E-value: 1.37e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 147 PDLLEAMVCKSGLGFVCGETGSGKSTLCSALYRYImdNFPDAKIVTYEDPVEYILGNendllpPHQAEIGRDV-VSFAAG 225
Cdd:pfam00437 120 EALLEFLRQPRGNILVTGPTGSGKTTTLYAALGEL--NTRDENIVTVEDPVEIQLEG------INQVQLNARAgVTFADL 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 226 LRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARLLGLFPPvirdsmAWAVLSLLQFILVQVL 305
Cdd:pfam00437 192 LRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGALTRLQDMGVP------PFELASSLLLVIAQRL 265
|
..
gi 446947719 306 VR 307
Cdd:pfam00437 266 VR 267
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
149-280 |
1.14e-28 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 112.54 E-value: 1.14e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 149 LLEAMVCKSGLGFVCGETGSGKSTLcsaLYRYIMDNFPDAKIVTYEDPVEYilgNENDLLpphQAEIGRDV-VSFAAGLR 227
Cdd:NF041000 120 LKQLLQRRSGLILFSGPTGSGKTTT---MYSLARKLALNKQVITIEDPVEI---KEPNFL---QLQVNEKAgMTYDTLLK 190
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 446947719 228 SAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARLLGL 280
Cdd:NF041000 191 AALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAGVIYRLLEL 243
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
149-307 |
3.67e-25 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 106.17 E-value: 3.67e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 149 LLEAMVCKSGLGFVCGETGSGKS-TLCSALyRYImdNFPDAKIVTYEDPVEYILG--NENDLLPphqaEIGRDvvsFAAG 225
Cdd:PRK10436 210 FRQALQQPQGLILVTGPTGSGKTvTLYSAL-QTL--NTAQINICSVEDPVEIPLAgiNQTQIHP----KAGLT---FQRV 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 226 LRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARLLGLFPPvirdsmAWAVLSLLQFILVQVL 305
Cdd:PRK10436 280 LRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLHTNSTSETLVRLQQMGIA------RWMLASALKLVIAQRL 353
|
..
gi 446947719 306 VR 307
Cdd:PRK10436 354 VR 355
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
10-380 |
0e+00 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 592.16 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 10 FPFQR-FTADELRHFFVWCAAHKVSDVDLTGGSPVSVSRFGRRVRCSSATLPTTLMSSLIDELFGREVIPRVLAGNPVDR 88
Cdd:TIGR02525 1 FNFGPgLTADTLRRFFVHCSRHEVSDIHLQGGSPIVVERHGRQVPASSFPLDNLELERLVDEVFGPEIKPTVKSGAPVDR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 89 TIQINGDASGRYGLKRGERIRLRSHLIQGTSGAEEKAVSITMRVIPTEIPDILSMNIEPDLLEAMVCKSGLGFVCGETGS 168
Cdd:TIGR02525 81 AIQLRGDENGRYGLGRGERVRFRCNFIQATIGKLETAISLTLRVIPSDIPDLKQMGIEPDLFNSLLPAAGLGLICGETGS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 169 GKSTLCSALYRYIMDNFPDAKIVTYEDPVEYILGNENDLLPPHQAEIGRDVVSFAAGLRSAVRRNPEIIGVGEIRDNETA 248
Cdd:TIGR02525 161 GKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIGVGEIRDLETF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 249 DAAVQAGNTGHYCLSTMHTKSPGETLARLLGLFPPVIRDSMAWAVLSLLQFILVQVLVRTNDGGRKAVREYIVINDELRD 328
Cdd:TIGR02525 241 QAAVLAGQSGHFCLGTLHVKSPGEAISRCLQMYPPEMREAAAFDLLSILQYIIVQRLLRTTDGKRQAVREYIVFDDSLRR 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 446947719 329 NLSGMPHAEWGHHIDAIIRQEKRRIRDQILEMYIRNEVDRREAILFIPPGEL 380
Cdd:TIGR02525 321 KLYDVDYSKWGRYIDDILRAEQRRIADQAWAMHQEGRIDEREAAEVIGAMEF 372
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
147-323 |
4.92e-102 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 299.29 E-value: 4.92e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 147 PDLLEAMVCKSGLGFVCGETGSGKSTLCSALYRYIMDNF-PDAKIVTYEDPVEYILGN-ENDLLPPHQAEIGRDVVSFAA 224
Cdd:cd19516 1 PDLVEALFPREGLVYVAGATGSGKSTLLAAIYRYILENDpPDRKIITYEDPIEFVYDGiKSKHSIIVQSQIPRHFKSFAK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 225 GLRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARLLGLFPPVIRDSMAWAVLSLLQFILVQV 304
Cdd:cd19516 81 AVREALRRKPSLIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLISLFPPEERDAAAYDLLSTLRFIIVQR 160
|
170
....*....|....*....
gi 446947719 305 LVRTNDGGRKAVREYIVIN 323
Cdd:cd19516 161 LVRTTDGKRVAVREYLVFD 179
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
16-376 |
2.79e-79 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 246.93 E-value: 2.79e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 16 TADELRHFFVWCAAHKVSDVDLTGGSPVSVSRFGRRVRCSSATLPTTLMSSLIDELFGREVIPRVLAGNPVDRTIQINGD 95
Cdd:COG2805 1 MAMDLDELLKLAVEQGASDLHLTVGSPPMLRIDGELVPLDDPPLTPEDLEALLKEILTEEQRERLEEEGELDFSYSLPGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 96 AsgryglkrgeriRLRSHLIQGTSGaeekaVSITMRVIPTEIPDILSMNIEPDLLEAMVCKSGLGFVCGETGSGKSTLCS 175
Cdd:COG2805 81 G------------RFRVNIFRQRGG-----VAAVLRLIPSEIPTLEELGLPPVLKELAELPRGLVLVTGPTGSGKSTTLA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 176 ALYRYIMDNFPDaKIVTYEDPVEYILGNENDLlpPHQAEIGRDVVSFAAGLRSAVRRNPEIIGVGEIRDNETADAAVQAG 255
Cdd:COG2805 144 AMIDYINETRAK-HIITIEDPIEFVHKHKKSL--INQREVGRDTPSFANALRAALREDPDVILVGEMRDLETIEAALTAA 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 256 NTGHYCLSTMHTKSPGETLARLLGLFPPVIRDSMAWAVLSLLQFILVQVLVRTNDG-GRKAVREYIVINDELRDNLSGMP 334
Cdd:COG2805 221 ETGHLVFATLHTNSAAQTIDRIIDVFPPEEQAQIRSQLAESLRGVISQRLLPRADGgGRVAAREILVNTPAVRNLIREGK 300
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 446947719 335 HAEWGHHIDAIIRQEKRRIRDQILEMYIRNEVDRREAILFIP 376
Cdd:COG2805 301 THQIPSLIQTGKKLGMQTMDQSLAELVKEGLITEETALAYAS 342
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
137-324 |
3.02e-49 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 165.40 E-value: 3.02e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 137 IPDILSMNIEPDLLEAMVCKSGLGFVCGETGSGKSTLCSALYRYIMDNFPdAKIVTYEDPVEYILGNENDLLppHQAEIG 216
Cdd:cd01131 1 IPTFEELGLPPVLKDLALKPRGLVLVTGPTGSGKSTTLAAMIDYINETRS-KHIITIEDPIEFVHKHKKSLI--NQREVG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 217 RDVVSFAAGLRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARLLGLFPPVIRDSMAWAVLSL 296
Cdd:cd01131 78 RDTESFAAALRAALREDPDVILVGEMRDLETIELALTAAETGHLVFSTLHTNSAAQTIDRIIDVFPPEQQEQVRIQLASS 157
|
170 180
....*....|....*....|....*....
gi 446947719 297 LQFILVQVLVRTNDG-GRKAVREyIVIND 324
Cdd:cd01131 158 LRGVISQRLLPKKDGgGRVAAFE-ILINT 185
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
148-323 |
1.16e-42 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 146.09 E-value: 1.16e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 148 DLLEAMVCK-SGLGFVCGETGSGKSTLCSALYRYImdNFPDAKIVTYEDPVEYILGNENdllpphQAEIGRDV-VSFAAG 225
Cdd:cd01129 1 ARLRRLIKRpHGLILVTGPTGSGKTTTLYAMLREL--NGPERNIITIEDPVEYQIPGIN------QSQVNEKIgLTFADA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 226 LRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARLLGLFPPvirdsmAWAVLSLLQFILVQVL 305
Cdd:cd01129 73 LRAILRQDPDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIE------PFLLASALRGVIAQRL 146
|
170
....*....|....*...
gi 446947719 306 VrtndgGRKAVREYIVIN 323
Cdd:cd01129 147 V-----GRTAIAEVLVLD 159
|
|
| PilU |
COG5008 |
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures]; |
126-323 |
1.48e-38 |
|
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
Pssm-ID: 444032 Cd Length: 370 Bit Score: 141.77 E-value: 1.48e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 126 VSITMRVIPTEIPDILSMNIEPDLLE-AMVcKSGLGFVCGETGSGKSTLCSALYRYIMDNFPDaKIVTYEDPVEYILGNE 204
Cdd:COG5008 92 VGMVLRRIETEIPTLDELGLPPVLKDlIME-KRGLVLFVGATGSGKSTTLAAMIDHRNENSSG-HILTIEDPIEFVHKHK 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 205 NDLLppHQAEIGRDVVSFAAGLRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARLLGLFPPV 284
Cdd:COG5008 170 KSIV--TQREVGVDTESYEVALKNALRQAPDVILIGEIRDRETMEHAIAFAETGHLCLATLHANNANQALDRIINFFPEE 247
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 446947719 285 IRDSMaWAVLSL-LQFILVQVLVRTNDGGRKAVREyIVIN 323
Cdd:COG5008 248 RRPQL-LMDLSLnLRAIVSQRLVPTKDGGRVAAVE-VLLN 285
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
147-307 |
1.37e-34 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 128.56 E-value: 1.37e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 147 PDLLEAMVCKSGLGFVCGETGSGKSTLCSALYRYImdNFPDAKIVTYEDPVEYILGNendllpPHQAEIGRDV-VSFAAG 225
Cdd:pfam00437 120 EALLEFLRQPRGNILVTGPTGSGKTTTLYAALGEL--NTRDENIVTVEDPVEIQLEG------INQVQLNARAgVTFADL 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 226 LRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARLLGLFPPvirdsmAWAVLSLLQFILVQVL 305
Cdd:pfam00437 192 LRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGALTRLQDMGVP------PFELASSLLLVIAQRL 265
|
..
gi 446947719 306 VR 307
Cdd:pfam00437 266 VR 267
|
|
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
123-328 |
4.30e-31 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 124.15 E-value: 4.30e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 123 EKAVsitMRVIPTE--IPDILSMNIEPD---LLEAMVCKS-GLGFVCGETGSGKS-TLCSALyRYIMDnfPDAKIVTYED 195
Cdd:COG2804 276 EKVV---LRILDKSaaLLDLEQLGFSPDqleRLRRLIRRPhGIILVTGPTGSGKTtTLYAAL-NELNT--PERNIITVED 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 196 PVEYILgnendllpPH------QAEIGrdvVSFAAGLRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKS 269
Cdd:COG2804 350 PVEYQL--------PGinqvqvNPKIG---LTFASALRSILRQDPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTND 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 270 PGETLARLL--GLFPPVIRDSmawavlslLQFILVQVLVRT--------------------------------------- 308
Cdd:COG2804 419 APSAITRLLdmGVEPFLLASS--------LLGVLAQRLVRRlcphckepyepdpeelerlglppeelapltfyrgvgceh 490
|
250 260
....*....|....*....|....
gi 446947719 309 --NDG--GRKAVREYIVINDELRD 328
Cdd:COG2804 491 cnGTGykGRTGIYELLVIDDELRE 514
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
149-280 |
1.14e-28 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 112.54 E-value: 1.14e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 149 LLEAMVCKSGLGFVCGETGSGKSTLcsaLYRYIMDNFPDAKIVTYEDPVEYilgNENDLLpphQAEIGRDV-VSFAAGLR 227
Cdd:NF041000 120 LKQLLQRRSGLILFSGPTGSGKTTT---MYSLARKLALNKQVITIEDPVEI---KEPNFL---QLQVNEKAgMTYDTLLK 190
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 446947719 228 SAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARLLGL 280
Cdd:NF041000 191 AALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAGVIYRLLEL 243
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
149-307 |
3.67e-25 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 106.17 E-value: 3.67e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 149 LLEAMVCKSGLGFVCGETGSGKS-TLCSALyRYImdNFPDAKIVTYEDPVEYILG--NENDLLPphqaEIGRDvvsFAAG 225
Cdd:PRK10436 210 FRQALQQPQGLILVTGPTGSGKTvTLYSAL-QTL--NTAQINICSVEDPVEIPLAgiNQTQIHP----KAGLT---FQRV 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 226 LRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARLLGLFPPvirdsmAWAVLSLLQFILVQVL 305
Cdd:PRK10436 280 LRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLHTNSTSETLVRLQQMGIA------RWMLASALKLVIAQRL 353
|
..
gi 446947719 306 VR 307
Cdd:PRK10436 354 VR 355
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
148-314 |
1.05e-21 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 91.06 E-value: 1.05e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 148 DLLEAMVcKSGLGF-VCGETGSGKSTLCSALYRYIMdnfPDAKIVTYEDPVEyilgnendLLPPH---------QAEIGR 217
Cdd:cd01130 3 AFLRLAV-RARKNIlISGGTGSGKTTLLNALLSFIP---PDERIVTIEDTRE--------LQLPHpnvvhlltrPGGGEK 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 218 DVVSFAAGLRSAVRRNPEIIGVGEIRDNETADaAVQAGNTGHY-CLSTMHTKSPGETLARLLGLfppVIRDSMAWAVLSL 296
Cdd:cd01130 71 GEVTMADLLKAALRMRPDRIIVGEVRGGEAYD-MLQAMNTGHPgSITTIHANSAEDAIDRLATL---VLEAGVNLDEEAL 146
|
170 180
....*....|....*....|...
gi 446947719 297 LQFI-----LVQVLVRTNDGGRK 314
Cdd:cd01130 147 RRLIasaidVIVHVKRLGDGVRR 169
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
161-318 |
2.16e-19 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 89.37 E-value: 2.16e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 161 FVCGETGSGKSTLCSALYRYIMdnfPDAKIVTYEDPVEyilgnendLLPPH---QAEIGRDVVSFAAG-------LRSAV 230
Cdd:COG0630 294 LVAGGTASGKTTLLNALLSFIP---PDAKIVTIEDTRE--------LNLPHenwISLVTRESFGGEEGdvtmfdlLKAAL 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 231 RRNPEIIGVGEIRDNEtADAAVQAGNTGHYCLSTMHTKSPGETLARLLGLfPPVIRDSMawavLSLLQFILVQVLVRTND 310
Cdd:COG0630 363 RQRPDYIVVGEVRGEE-AYTLFQAMATGHGVLSTFHADSVESAINRLTSP-PINVPRTL----LQALDLVVFQKRVRVGG 436
|
....*...
gi 446947719 311 GGRKAVRE 318
Cdd:COG0630 437 KRVRRVTS 444
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
148-310 |
9.60e-17 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 77.05 E-value: 9.60e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 148 DLLEAMVCKSGLGFVCGETGSGKSTLCSAlyryIMDNFP-DAKIVTYEDPVEYILGNENDLlppHQAEIGRDVvSFAAGL 226
Cdd:cd19477 1 SAIKDGIAIGKNVIVCGGTGSGKTTYIKS----ILEFIPkEERIISIEDTEEIVFKHHKNY---TQLFFGGNI-TSADCL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 227 RSAVRRNPEIIGVGEIRDnETADAAVQAGNTGHY-CLSTMHTKSPGETLARL------LGLFPPVIRDSMAWAVLSLLQF 299
Cdd:cd19477 73 KSCLRQRPDRIILGELRS-SEAYDFYNVLCSGHKgTLTTLHAGSSEEAFIRLan*sssNSAARNIKFESLIEGFKDLIDG 151
|
170
....*....|.
gi 446947719 300 ILVQVLVRTND 310
Cdd:cd19477 152 IVHINHHKQCD 162
|
|
| PRK13833 |
PRK13833 |
conjugal transfer protein TrbB; Provisional |
162-289 |
1.13e-10 |
|
conjugal transfer protein TrbB; Provisional
Pssm-ID: 172360 [Multi-domain] Cd Length: 323 Bit Score: 62.12 E-value: 1.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 162 VCGETGSGKSTLCSALYRYIMDNFPDAKIVTYEDPVEYILGNENDLLpPHQAeigrDVVSFAAGLRSAVRRNPEIIGVGE 241
Cdd:PRK13833 149 ISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVA-LHTS----DTVDMARLLKSTMRLRPDRIIVGE 223
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 446947719 242 IRDNeTADAAVQAGNTGHY-CLSTMHTKSPGETLARLLGLFPPVIRDSM 289
Cdd:PRK13833 224 VRDG-AALTLLKAWNTGHPgGVTTIHSNTAMSALRRLEQLTAEASQQPM 271
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
162-320 |
1.05e-09 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 58.98 E-value: 1.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 162 VCGETGSGKSTLCSALYRYIMDNFPDAKIVTYEDPVEYILGNENDLlpphQAEIGRDvVSFAAGLRSAVRRNPEIIGVGE 241
Cdd:PRK13894 153 VIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYV----QYHTSID-VNMTALLKTTLRMRPDRILVGE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 242 IRDNETADaAVQAGNTGHY-CLSTMHTKSPGETLARLLGLfppVIRDSMAWAVLSLLQFILVQVLV---RTnDGGRKaVR 317
Cdd:PRK13894 228 VRGPEALD-LLMAWNTGHEgGAATLHANNAKAGLDRLKSL---ISMHPDAPKPIEPLIGEAVHVVVhiaRT-PGGRR-IQ 301
|
...
gi 446947719 318 EYI 320
Cdd:PRK13894 302 EIL 304
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
144-280 |
3.10e-08 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 54.90 E-value: 3.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947719 144 NIEPDLLEAMVCKSGLgFVCGETGSGKSTLCSALYRYIMdnfPDAKIVTYEDPVEYILGNENDL-LPPHQAEIGRDVVSF 222
Cdd:PRK13851 150 DLEAFLHACVVGRLTM-LLCGPTGSGKTTMSKTLISAIP---PQERLITIEDTLELVIPHENHVrLLYSKNGAGLGAVTA 225
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446947719 223 AAGLRSAVRRNPEIIGVGEIRDnetaDAA------VQAGNTGhyCLSTMHTKSPGETLARLLGL 280
Cdd:PRK13851 226 EHLLQASLRMRPDRILLGEMRD----DAAwaylseVVSGHPG--SISTIHGANPVQGFKKLFSL 283
|
|
| PRK13768 |
PRK13768 |
GTPase; Provisional |
161-200 |
5.65e-04 |
|
GTPase; Provisional
Pssm-ID: 237498 [Multi-domain] Cd Length: 253 Bit Score: 41.01 E-value: 5.65e-04
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 446947719 161 FVCGETGSGKSTLCSALYRYIMDNFPDAKIVTYeDP-VEYI 200
Cdd:PRK13768 6 FFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNL-DPaVEYL 45
|
|
| |
