|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
1-649 |
0e+00 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 1197.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 1 MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNMPFIAQAGGSIFDNLALVFAIGVASSWSKDSAGAAALAGAVGY 80
Cdd:PRK10255 1 MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQAGGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 81 FVMTKAMVTINPEINMGVLAGIITGLVGGAVYNRWSGIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHGIH 160
Cdd:PRK10255 81 FVLTKAMVTINPEINMGVLAGIITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 161 AGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINRFYAGDGTAGMFMSGFFPIMMFG 240
Cdd:PRK10255 161 AGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINRFYAGDGTAGMFMSGFFPIMMFG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 241 LPGAALAMYFAAPKERRPMVGGMLLSVAITAFLTGVTEPLEFLFMFLAPLLYLLHAILTGISLFVATLLGIHAGFSFSAG 320
Cdd:PRK10255 241 LPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 321 AIDYVLMYNLPAASNNVWMLLVMGVVFFIIYFLLFSAVIRMFNLKTPGREDKVDEMVTEEANSNTEEGLTQLATSYIAAV 400
Cdd:PRK10255 321 AIDYALMYNLPAASQNVWMLLVMGVVFFAIYFVLFSAVIRMFNLKTPGREDKEDEIVTEEANSNTEEGLTQLATNYIAAV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 401 GGTDNLKAIDACITRLRLTVNDSARVNDAACKRLGASGVVKLNKQTIQVIVGAKAESIGDEMKKVVARGPVaAASADAAH 480
Cdd:PRK10255 401 GGTDNLKAIDACITRLRLTVADSARVNDAMCKRLGASGVVKLNKQTIQVIVGAKAESIGDAMKKVVARGPV-AAASAEAT 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 481 VATPAPAAKPQAVPNAVTIAELVSPITGEVVALDQVPDEAFASKAVGDGVAVKPTDKTVVSPAAGTIVKIFNTNHAFCLE 560
Cdd:PRK10255 480 PATAAPVAKPQAVPNAVSIAELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLE 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 561 TEKGAEIVVHMGIDTVALNGQGFKRLVEEGAEVSAGQPVLELDLDFLNANARSMISPVVCSNSDDFSALVIKADGHVVAG 640
Cdd:PRK10255 560 TEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDDFSGLIIKAQGHVVAG 639
|
....*....
gi 446945811 641 QTPLYEIKS 649
Cdd:PRK10255 640 QTPLYEIKK 648
|
|
| PTS-II-BC-nag |
TIGR01998 |
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B ... |
3-463 |
0e+00 |
|
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273920 [Multi-domain] Cd Length: 475 Bit Score: 649.52 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 3 ILGFFQRLGRALQLPIAVLPVAALLLRFG----QPDLLNMPFIAQAGGSIFDNLALVFAIGVASSWSKDSAGAAALAGAV 78
Cdd:TIGR01998 1 ILGYFQKLGRALMLPIATLPVAALLLRIGnathGADLLVANFFIAAGGAIFDNLGLLFAIGVAIGMSKDNDGAAALAGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 79 GYFVMTK--------AMVTINPEINMGVLA------GIITGLVGGAVYNRWSGIKLPDFLSFFGGKRFVPIATGFFCLVL 144
Cdd:TIGR01998 81 AYFVVTKvlsppplaAALGIKSEINMAFSAwknvfvGILAGLIAGALYNRFSEIKLPEALSFFSGKRLVPIMAGFVGLVL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 145 AAIFGYVWPPVQHGIHAGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQ---IGEFTNAAGTvfhGDINRFYa 221
Cdd:TIGR01998 161 AALLGYVWPTLYGGIVAFGESISGLGALGAGIYGFLNRLLIPTGLHHALNSVFWFDvagINDFGNFTGG---GDLNRFK- 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 222 gdGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAITAFLTGVTEPLEFLFMFLAPLLYLLHAILTGI 301
Cdd:TIGR01998 237 --GIAGMFMAGFFPIMMFGLPAAALAMYHTARPERRKQVGGMLLSVAFASFLTGVTEPLEFSFMFLAPVLYALHALLTGL 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 302 SLFVATLLGIHAGFSFSAGAIDYVLMYNLPAASNNvWMLLVMGVVFFIIYFLLFSAVIRMFNLKTPGREDKVDEMVTEEA 381
Cdd:TIGR01998 315 SLFIAAMLHWTAGFSFSAGLIDYVLSFNNPTANQP-LMLLVQGLVFFALYYVVFRFAIRRFNLKTPGREDEDPEGATAAA 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 382 NSNTEEGLTQLATSYIAAVGGTDNLKAIDACITRLRLTVNDSARVNDAACKRLGASGVVKLNKQTIQVIVGAKAESIGDE 461
Cdd:TIGR01998 394 VTSTGDSKMQLAKQYLAALGGHDNLVSIDACITRLRLTLKDTSIVDEPALKALGARGVVKLGKHNLQVILGPLAEIVAGE 473
|
..
gi 446945811 462 MK 463
Cdd:TIGR01998 474 MK 475
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
3-466 |
7.03e-83 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 268.73 E-value: 7.03e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 3 ILGFFQRLGRALQLPIAVLPVAALLLRFGQ----PDLLN--------MPFIAQAGGSIFDNLALVFAIGVASSWSKDSAG 70
Cdd:COG1263 8 LFRFLQKIGGIFMPPIPVLPAAGLLLGLGAlltnPGLLGegsflsgtYQILNAAGDAVFYFLPLLFAIGAAKGFGGNPAL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 71 AAALAGAVGYFVMTKAMVT---------INPEI--NMGVLAGIITGLVGGAVyNRWSGIKLPDFLSFFggkrFVPIATGF 139
Cdd:COG1263 88 AAVIGYLLVHPTLLNAYAVaggyisflgIPTLIgyQGGVFPGILAGWLAAYL-EKFLKKKLPDALGFF----FVPILTLL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 140 FCLVLAA-IFGYVWPPVQHGIHAGGEWIVS-AGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEftnaagtvfHGDIn 217
Cdd:COG1263 163 IMVPLALlVIGPIWPPIGNGIAAGLGWIYGlAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGG---------TGDD- 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 218 rfyagdgtagmfmsGFFPI---MMFGLPGAALAMYFAAPKerRPMVGGMLLSVAITAFLTGVTEPLEFLFMFLAPLLYLL 294
Cdd:COG1263 233 --------------GLFPIlaaAMFGQPGAALAVYLKAKP--NKKVKGLAISAALTAFLTGITEPAEFGFNLVAPKLFIA 296
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 295 HAILTGISLFVATLLGIHAgFSFS-AGAIDYVLMYNLPAASnnvWMLLVMGVVFFIIYFLLFSAVIrmfnlktpGREDKV 373
Cdd:COG1263 297 HAIGGGLGGAIAGLLGVKA-FSFGvGGLIDFPSILNPGATN---LLLYLIGLVIAFVYYFVFTFLI--------GREDEE 364
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 374 DEMVTEEANSNTEEGltqlATSYIAAVGGTDNLKAIDACITRLRLTVNDSARVNDAACKRLGASGVVKLNKQTIQVIVGA 453
Cdd:COG1263 365 EEEKLATKADAKKEE----AEAAAAALGGGGGLLLLEADITVLLLTLVDVVIVVVKDVVKLAAAGAVVVGVGGVGAVGGV 440
|
490
....*....|...
gi 446945811 454 KAESIGDEMKKVV 466
Cdd:COG1263 441 GGGGVVIVIVIII 453
|
|
| PTS_IIA_glc |
cd00210 |
PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: ... |
502-625 |
2.14e-60 |
|
PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Pssm-ID: 238128 [Multi-domain] Cd Length: 124 Bit Score: 197.51 E-value: 2.14e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 502 LVSPITGEVVALDQVPDEAFASKAVGDGVAVKPTDKTVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALNGQ 581
Cdd:cd00210 1 LASPITGEIVPLDQVPDEVFASKMMGDGFAIKPSDGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKLNGE 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 446945811 582 GFKRLVEEGAEVSAGQPVLELDLDFLNANARSMISPVVCSNSDD 625
Cdd:cd00210 81 GFTSHVEEGQRVKQGDKLLEFDLPAIKAAGLDDTTPVIVTNSDE 124
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
11-300 |
2.26e-55 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 191.02 E-value: 2.26e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 11 GRALQLPIAVLPVAALLLRFG--QPDLLNMP------------FIAQAGGSIFDNLALVFAIGVASSWSKD--------- 67
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGnlPNDTTGLPaggftgdsplaeILKQAGSAAFGILPILFAIGIAYGLAGGdgvagaagl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 68 ------SAGAAALAGAVGYFVMTKAMVTINPEINMGVLAGIITGLVGGAVYNRWSG---IKLPDFLSFFGGKRFVPIATG 138
Cdd:pfam02378 81 igllsfNLAAAISVALTAAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKnitIKLPDSLPFFVGKRFVPIITG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 139 F-FCLVLAAIFGYVWPPVQHGIHAGGEWIVSAG-ALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAagtvfhgdI 216
Cdd:pfam02378 161 FvTLLVIGPVLGLIWPAIQGGLNALGLLLIIAGgILGGLIFGFLERLLWPFGLHGAFIAIFWFLPIGGSNP--------I 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 217 NRFYAGDGTAGMFMSGFFpIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAITAFLTGVTEPLEFLFMFLAPLLYLLHA 296
Cdd:pfam02378 233 ANQQAYGAGAAHILTGGF-DVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPFFIPA 311
|
....
gi 446945811 297 ILTG 300
Cdd:pfam02378 312 ILAG 315
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
1-649 |
0e+00 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 1197.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 1 MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNMPFIAQAGGSIFDNLALVFAIGVASSWSKDSAGAAALAGAVGY 80
Cdd:PRK10255 1 MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQAGGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 81 FVMTKAMVTINPEINMGVLAGIITGLVGGAVYNRWSGIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHGIH 160
Cdd:PRK10255 81 FVLTKAMVTINPEINMGVLAGIITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 161 AGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINRFYAGDGTAGMFMSGFFPIMMFG 240
Cdd:PRK10255 161 AGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINRFYAGDGTAGMFMSGFFPIMMFG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 241 LPGAALAMYFAAPKERRPMVGGMLLSVAITAFLTGVTEPLEFLFMFLAPLLYLLHAILTGISLFVATLLGIHAGFSFSAG 320
Cdd:PRK10255 241 LPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 321 AIDYVLMYNLPAASNNVWMLLVMGVVFFIIYFLLFSAVIRMFNLKTPGREDKVDEMVTEEANSNTEEGLTQLATSYIAAV 400
Cdd:PRK10255 321 AIDYALMYNLPAASQNVWMLLVMGVVFFAIYFVLFSAVIRMFNLKTPGREDKEDEIVTEEANSNTEEGLTQLATNYIAAV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 401 GGTDNLKAIDACITRLRLTVNDSARVNDAACKRLGASGVVKLNKQTIQVIVGAKAESIGDEMKKVVARGPVaAASADAAH 480
Cdd:PRK10255 401 GGTDNLKAIDACITRLRLTVADSARVNDAMCKRLGASGVVKLNKQTIQVIVGAKAESIGDAMKKVVARGPV-AAASAEAT 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 481 VATPAPAAKPQAVPNAVTIAELVSPITGEVVALDQVPDEAFASKAVGDGVAVKPTDKTVVSPAAGTIVKIFNTNHAFCLE 560
Cdd:PRK10255 480 PATAAPVAKPQAVPNAVSIAELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLE 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 561 TEKGAEIVVHMGIDTVALNGQGFKRLVEEGAEVSAGQPVLELDLDFLNANARSMISPVVCSNSDDFSALVIKADGHVVAG 640
Cdd:PRK10255 560 TEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDDFSGLIIKAQGHVVAG 639
|
....*....
gi 446945811 641 QTPLYEIKS 649
Cdd:PRK10255 640 QTPLYEIKK 648
|
|
| PTS-II-BC-nag |
TIGR01998 |
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B ... |
3-463 |
0e+00 |
|
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273920 [Multi-domain] Cd Length: 475 Bit Score: 649.52 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 3 ILGFFQRLGRALQLPIAVLPVAALLLRFG----QPDLLNMPFIAQAGGSIFDNLALVFAIGVASSWSKDSAGAAALAGAV 78
Cdd:TIGR01998 1 ILGYFQKLGRALMLPIATLPVAALLLRIGnathGADLLVANFFIAAGGAIFDNLGLLFAIGVAIGMSKDNDGAAALAGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 79 GYFVMTK--------AMVTINPEINMGVLA------GIITGLVGGAVYNRWSGIKLPDFLSFFGGKRFVPIATGFFCLVL 144
Cdd:TIGR01998 81 AYFVVTKvlsppplaAALGIKSEINMAFSAwknvfvGILAGLIAGALYNRFSEIKLPEALSFFSGKRLVPIMAGFVGLVL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 145 AAIFGYVWPPVQHGIHAGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQ---IGEFTNAAGTvfhGDINRFYa 221
Cdd:TIGR01998 161 AALLGYVWPTLYGGIVAFGESISGLGALGAGIYGFLNRLLIPTGLHHALNSVFWFDvagINDFGNFTGG---GDLNRFK- 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 222 gdGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAITAFLTGVTEPLEFLFMFLAPLLYLLHAILTGI 301
Cdd:TIGR01998 237 --GIAGMFMAGFFPIMMFGLPAAALAMYHTARPERRKQVGGMLLSVAFASFLTGVTEPLEFSFMFLAPVLYALHALLTGL 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 302 SLFVATLLGIHAGFSFSAGAIDYVLMYNLPAASNNvWMLLVMGVVFFIIYFLLFSAVIRMFNLKTPGREDKVDEMVTEEA 381
Cdd:TIGR01998 315 SLFIAAMLHWTAGFSFSAGLIDYVLSFNNPTANQP-LMLLVQGLVFFALYYVVFRFAIRRFNLKTPGREDEDPEGATAAA 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 382 NSNTEEGLTQLATSYIAAVGGTDNLKAIDACITRLRLTVNDSARVNDAACKRLGASGVVKLNKQTIQVIVGAKAESIGDE 461
Cdd:TIGR01998 394 VTSTGDSKMQLAKQYLAALGGHDNLVSIDACITRLRLTLKDTSIVDEPALKALGARGVVKLGKHNLQVILGPLAEIVAGE 473
|
..
gi 446945811 462 MK 463
Cdd:TIGR01998 474 MK 475
|
|
| PTS-II-BC-glcB |
TIGR02002 |
PTS system, glucose-specific IIBC component; This model represents the combined B and C ... |
2-467 |
1.67e-140 |
|
PTS system, glucose-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273923 [Multi-domain] Cd Length: 502 Bit Score: 419.19 E-value: 1.67e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 2 NILGFFQRLGRALQLPIAVLPVAALLLRFG----QPDLLN-MPF------------IAQAGGSIFDNLALVFAIGVASSW 64
Cdd:TIGR02002 3 KAFGQLQKIGKALMLPVAVLPVAGILLGFGnanqNNQVFSfLPFlhmewiqlvskvMEAAGGIIFANLPLIFAIGVALGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 65 SKDSAGAAALAGAVgYFVMTKAM--------------------VTINPEINMGVLAGIITGLVGGAVYNRWSGIKLPDFL 124
Cdd:TIGR02002 83 AGNDGVAGLAALVG-YLIMNKTMgvvagltllliaseiasfasVLGIPTLQTGVFGGIIIGAIAAYCYNRFYNIKLPEYL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 125 SFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHGIHAGGEWIVSAG-ALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGE 203
Cdd:TIGR02002 162 GFFAGKRFVPIITGLAAIVTGIVLSFIWPPVQDALNTFSHWAAYQNpVVAFFIFGFIERSLIPFGLHHIFNAPFWFEFGS 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 204 FTNAAGTVFHGDINRFYAG--DG---TAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAITAFLTGVTE 278
Cdd:TIGR02002 242 YTNEAGNLFRGDQPIFMAQlkDGvafTAGGFLSGGFPFMMFGLPAAALAIYHSAKPENKKLVGGLMISAALTSFLTGITE 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 279 PLEFLFMFLAPLLYLLHAILTGISLFVATLLGIHAGFSFSAGAIDYVLmYNLPAASNNVWMLLVMGVVFFIIYFLLFSAV 358
Cdd:TIGR02002 322 PLEFSFLFVAPILYVIHAILAGLSFPIMILLGVKIGTTFSGGAIDFIL-YGLLSNRSKAWLFIIVGIGYAIIYYFLFRFL 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 359 IRMFNLKTPGREDKvdemvTEEANSNTEEGltQLATSYIAAVGGTDNLKAIDACITRLRLTVNDSARVNDAACKRLGASG 438
Cdd:TIGR02002 401 IKKLNLKTPGREDA-----TAEAKATGEPS--ELAFDVVAALGGKENITSLDACITRLRVSVADISKVDVAKLKKLGAAG 473
|
490 500
....*....|....*....|....*....
gi 446945811 439 VVKLNkQTIQVIVGAKAESIGDEMKKVVA 467
Cdd:TIGR02002 474 VLVVG-NNVQAIFGPKSDTIKSEMHDIIR 501
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
1-462 |
8.96e-134 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 401.02 E-value: 8.96e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 1 MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNMPFI-----AQAGGSIFDNLALVFAIGVASSWSKDSAGAAALA 75
Cdd:PRK11089 3 KNAFANLQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPAVvshvmAEAGGSVFANMPLIFAIGVALGFTNNDGVSALAA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 76 GAVgYFVMTKAMVTINP--------------EINMGVLAGIITGLVGGAVYNRWSGIKLPDFLSFFGGKRFVPIATGFFC 141
Cdd:PRK11089 83 VVA-YGIMVKTMAVVAPlvlhlpaeeiaakhLADTGVLGGIIAGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLAA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 142 LVLAAIFGYVWPPVQHGIHAGGEWIVSAG-ALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINRFY 220
Cdd:PRK11089 162 IFTGVVLSFIWPPIGSAIQTFSQWAAYQNpVVAFGIYGFVERSLVPFGLHHIWNVPFQMQIGEYTNAAGQVFHGDIPRYM 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 221 AGDGTAGMfMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAITAFLTGVTEPLEFLFMFLAPLLYLLHAILTG 300
Cdd:PRK11089 242 AGDPTAGK-LSGGFLFKMYGLPAAAIAIWHSAKPENRAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 301 ISLFVATLLGIHAGFSFSAGAIDYVLmynLPAASNNVWMLLVMGVVFFIIYFLLFSAVIRMFNLKTPGREDkvdemvteE 380
Cdd:PRK11089 321 LAFPICILLGMRDGTSFSHGLIDFIV---LSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKALDLKTPGRED--------E 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 381 ANSNTEEGLTQLATSYIAAVGGTDNLKAIDACITRLRLTVNDSARVNDAACKRLGASGVVkLNKQTIQVIVGAKAESIGD 460
Cdd:PRK11089 390 TEDAKATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVV-VAGSGVQAIFGTKSDNLKT 468
|
..
gi 446945811 461 EM 462
Cdd:PRK11089 469 EM 470
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
6-470 |
1.81e-86 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 280.08 E-value: 1.81e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 6 FFQRLGRALQLPIAVLPVAALLLRFGQP----DLL-NMPFI------------AQAGGSIFDNLALVFAIGVASSWSKDS 68
Cdd:PRK10110 14 FFQQLGKTFMLPVALLSFCGIMLGIGSSlsshDVItLIPFLgnpvlqaiftwmSKIGSFAFSFLPVMFCIAIPLGLAREN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 69 AGAAALAGAVGYFVMTKA----------MVTINPE---------------INMGVLAGIITGLVGGAVYNRWSGIKLPDF 123
Cdd:PRK10110 94 KGVAAFAGFVGYAVMNLAvnfwltnkgiLPTTDAAvlkanniqsilgiqsIDTGILGAVIAGIIVWMLHERFHNIRLPDA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 124 LSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHGIHAGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLntIAWFQige 203
Cdd:PRK10110 174 LAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLHHIL--VALIR--- 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 204 FTNAAGTV------FHGDINRFYA---------GDGTAGMFMS-GFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSV 267
Cdd:PRK10110 249 FTDAGGTQevcgqtVSGALTIFQAqlscptthgFSESATRFLSqGKMPAFLGGLPGAALAMYHCARPENRHKIKGLLISG 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 268 AITAFLTGVTEPLEFLFMFLAPLLYLLHAILTGISLFVATLLGIHAGfSFSAGAIDYVLMYNLPAASNNVWMLLVMGVVF 347
Cdd:PRK10110 329 VIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIG-NTDGNIIDFVVFGILHGLSTKWYMVPVVAAIW 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 348 FIIYFLLFSAVIRMFNLKTPGREDKVDEMVTEEANSNTEEGLTQlATSYIAAVGGTDNLKAIDACITRLRLTVNDSARVN 427
Cdd:PRK10110 408 FVVYYVIFRFAITRFNLKTPGRDSEVASSIEKAVAGAPGKSGYN-VPAILEALGGADNIVSLDNCITRLRLSVKDMSLVD 486
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 446945811 428 DAACKRLGASGVVKLNKQTIQVIVGAKAESIGDEMKKVVARGP 470
Cdd:PRK10110 487 VQALKDNRAIGVVQLNQHNLQVVIGPQVQSVKDEMAGLMHTVQ 529
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
3-466 |
7.03e-83 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 268.73 E-value: 7.03e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 3 ILGFFQRLGRALQLPIAVLPVAALLLRFGQ----PDLLN--------MPFIAQAGGSIFDNLALVFAIGVASSWSKDSAG 70
Cdd:COG1263 8 LFRFLQKIGGIFMPPIPVLPAAGLLLGLGAlltnPGLLGegsflsgtYQILNAAGDAVFYFLPLLFAIGAAKGFGGNPAL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 71 AAALAGAVGYFVMTKAMVT---------INPEI--NMGVLAGIITGLVGGAVyNRWSGIKLPDFLSFFggkrFVPIATGF 139
Cdd:COG1263 88 AAVIGYLLVHPTLLNAYAVaggyisflgIPTLIgyQGGVFPGILAGWLAAYL-EKFLKKKLPDALGFF----FVPILTLL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 140 FCLVLAA-IFGYVWPPVQHGIHAGGEWIVS-AGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEftnaagtvfHGDIn 217
Cdd:COG1263 163 IMVPLALlVIGPIWPPIGNGIAAGLGWIYGlAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGG---------TGDD- 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 218 rfyagdgtagmfmsGFFPI---MMFGLPGAALAMYFAAPKerRPMVGGMLLSVAITAFLTGVTEPLEFLFMFLAPLLYLL 294
Cdd:COG1263 233 --------------GLFPIlaaAMFGQPGAALAVYLKAKP--NKKVKGLAISAALTAFLTGITEPAEFGFNLVAPKLFIA 296
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 295 HAILTGISLFVATLLGIHAgFSFS-AGAIDYVLMYNLPAASnnvWMLLVMGVVFFIIYFLLFSAVIrmfnlktpGREDKV 373
Cdd:COG1263 297 HAIGGGLGGAIAGLLGVKA-FSFGvGGLIDFPSILNPGATN---LLLYLIGLVIAFVYYFVFTFLI--------GREDEE 364
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 374 DEMVTEEANSNTEEGltqlATSYIAAVGGTDNLKAIDACITRLRLTVNDSARVNDAACKRLGASGVVKLNKQTIQVIVGA 453
Cdd:COG1263 365 EEEKLATKADAKKEE----AEAAAAALGGGGGLLLLEADITVLLLTLVDVVIVVVKDVVKLAAAGAVVVGVGGVGAVGGV 440
|
490
....*....|...
gi 446945811 454 KAESIGDEMKKVV 466
Cdd:COG1263 441 GGGGVVIVIVIII 453
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
45-311 |
1.11e-74 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 241.45 E-value: 1.11e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 45 GGSIFDNLALVFAIGVASSWSKDSAGAAALAGAVGYFVMTKAMVTINP--------EINM----GVLAGIITGLVGGAVY 112
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVGAQavgnffgfEIAKvgytGVVGPIIVGAIALALH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 113 NRWSGIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVqhGIHAGGEWIVSAG-ALGSGIFGFINRLLIPTGLHQ 191
Cdd:TIGR00852 81 ERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPV--GISALLHWLYSAGgALGGAIFGFLYRLLVPTGLHH 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 192 VLNTIAWFQI-GEFTNAAGTVFHGDINRFYA--GDGTAGMFMSG--------FFPIMMFGLPGAALAMYFAAPKERRPMV 260
Cdd:TIGR00852 159 IFYAIFIQLIaGGTVIGGGQVIPGDALANMAqgGAALAVFFTAGdakfksigLPAAFSAGLGITEPAMYGVALRERRPFV 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 446945811 261 GGMLLSVAITAFLTGVTEPLEFLFMFLAPLLYLLHAILTGISLFVATLLGI 311
Cdd:TIGR00852 239 AGLIGSALLTAFLTGITEPLEFLFLFGAPGLYSIHAVLAGSIFTVAIGMGI 289
|
|
| PTS-IIBC-alpha |
TIGR02005 |
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused ... |
7-452 |
3.03e-67 |
|
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273925 [Multi-domain] Cd Length: 524 Bit Score: 228.93 E-value: 3.03e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 7 FQRLGRALQLPIAVLPVAALLLRFG----QPDLL-----------NMPFIAQAGG-SIFDNLALVFAIGVASSWSKDSAG 70
Cdd:TIGR02005 4 IQRFGGAMFVPVLLFAFAGIVVGFAilfkNPDIMgsladqntfwyKFWSVIEEGGwTVFRQMPLIFVVGLPIGLAKKAQG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 71 AAALAGAVGYFVMT---KAMVTINP-------EINMGV-------LAGIIT---GLVGG--------AVYNRWSGIKLPD 122
Cdd:TIGR02005 84 RACLAALMGYLTFNyfiNAILTQWGssfgvnfTQGVGVgvsgltsIAGIKTldtSIIGAiiisgiitYIHNRFFDKRLPV 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 123 FLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHGIHAGGEWIVSAGALGSGIFGFINRLLIPTGLHQvlntiawFQIG 202
Cdd:TIGR02005 164 FLGIFQGTTFVVTIAFFVMLPCAAITCLVWPKVQMGIGSLQAFLISSGYIGVWLYTFLERILIPTGLHH-------FIYG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 203 EFTNAAGTVFHG-------DINRF-YAGDGTAGMFMSGFFPIM----MFGLPGAALAMYFAAPKERRPMVGGMLLSVAIT 270
Cdd:TIGR02005 237 PFIFGPAVVNHGiqaywaqHLNEFaKSTKPLKELFPYGGFALHgnskVFGCLGIALAMYATAPPENRKKVAGLLIPATLT 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 271 AFLTGVTEPLEFLFMFLAPLLYLLHAILTGISLFVATLLGIHAgfSFSAGAIDYVLMYNLPAASNNVWML---LVMGVVF 347
Cdd:TIGR02005 317 AVVVGITEPLEFTFLFIAPYLFVVHAVLAASMATVMYAFGVVG--NMGGGLIDFIATNWLPLFKNHWGTYvtqIIIGLCF 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 348 FIIYFLLFSAVIRMFNLKTPGREDKVDEM-------------VTEEANsNTEEGLTQlATSYIAAVGGTDNLKAIDACIT 414
Cdd:TIGR02005 395 TAIYFLVFRFLILKFNIPTPGREDTEEEVklyskadykakkgDSVESK-RASSGNDK-AAYFLQALGGKENIKDVTNCAT 472
|
490 500 510
....*....|....*....|....*....|....*....
gi 446945811 415 RLRLTVNDSARV-NDAACKRLGASGVVKlNKQTIQVIVG 452
Cdd:TIGR02005 473 RLRISVKDESKVlDDEVFKKAGAHGVVR-SGKAIQVIVG 510
|
|
| NagE |
COG2190 |
Phosphotransferase system IIA component [Carbohydrate transport and metabolism]; |
501-648 |
1.09e-66 |
|
Phosphotransferase system IIA component [Carbohydrate transport and metabolism];
Pssm-ID: 441793 [Multi-domain] Cd Length: 154 Bit Score: 215.37 E-value: 1.09e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 501 ELVSPITGEVVALDQVPDEAFASKAVGDGVAVKPTDKTVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALNG 580
Cdd:COG2190 7 TIYAPVSGEVVPLSEVPDPVFASKMMGDGVAIEPTGGKVVAPVDGTVTSVFPTKHAIGLTSDDGLEVLIHIGIDTVKLNG 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446945811 581 QGFKRLVEEGAEVSAGQPVLELDLDFLNANARSMISPVVCSNSDDFSALVIKADGHVVAGQtPLYEIK 648
Cdd:COG2190 87 EGFTVLVKEGDKVKAGDPLIEFDLDAIKAAGYSLITPVVVTNSDEYKSVELTKSGQVKAGD-PLLTVK 153
|
|
| PTS_IIA_glc |
cd00210 |
PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: ... |
502-625 |
2.14e-60 |
|
PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Pssm-ID: 238128 [Multi-domain] Cd Length: 124 Bit Score: 197.51 E-value: 2.14e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 502 LVSPITGEVVALDQVPDEAFASKAVGDGVAVKPTDKTVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALNGQ 581
Cdd:cd00210 1 LASPITGEIVPLDQVPDEVFASKMMGDGFAIKPSDGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKLNGE 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 446945811 582 GFKRLVEEGAEVSAGQPVLELDLDFLNANARSMISPVVCSNSDD 625
Cdd:cd00210 81 GFTSHVEEGQRVKQGDKLLEFDLPAIKAAGLDDTTPVIVTNSDE 124
|
|
| PTBA |
TIGR00830 |
PTS system, glucose subfamily, IIA component; These are part of the The PTS Glucose-Glucoside ... |
502-622 |
1.08e-59 |
|
PTS system, glucose subfamily, IIA component; These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. The three-dimensional structures of the IIA and IIB domains of the E. coli glucose permease have been elucidated. IIAglchas a complex b-sandwich structure while IIBglc is a split ab-sandwich with a topology unrelated to the split ab-sandwich structure of HPr. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273289 [Multi-domain] Cd Length: 121 Bit Score: 195.54 E-value: 1.08e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 502 LVSPITGEVVALDQVPDEAFASKAVGDGVAVKPTDKTVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALNGQ 581
Cdd:TIGR00830 1 IVSPISGEIVPLDQVPDEVFASKIVGDGFAILPTDGKVVAPVDGKIGKIFPTKHAFGIESDNGVEILIHIGIDTVKLNGE 80
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 446945811 582 GFKRLVEEGAEVSAGQPVLELDLDFLNANARSMISPVVCSN 622
Cdd:TIGR00830 81 GFTSHVEEGDRVKKGDPLLEFDLKAIKKKGYSITTPVVVTN 121
|
|
| PRK09439 |
PRK09439 |
PTS system glucose-specific transporter subunit; Provisional |
494-648 |
1.84e-57 |
|
PTS system glucose-specific transporter subunit; Provisional
Pssm-ID: 181859 [Multi-domain] Cd Length: 169 Bit Score: 191.34 E-value: 1.84e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 494 PNAVTIaELVSPITGEVVALDQVPDEAFASKAVGDGVAVKPTDKTVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGI 573
Cdd:PRK09439 16 KDTGTI-EIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGI 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446945811 574 DTVALNGQGFKRLVEEGAEVSAGQPVLELDLDFLNANARSMISPVVCSNSDDFSALViKADGHVVAGQTPLYEIK 648
Cdd:PRK09439 95 DTVELKGEGFKRIAEEGQRVKVGDPIIEFDLPLLEEKAKSTLTPVVISNMDEIKELI-KLSGSVTAGETPVIRVK 168
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
11-300 |
2.26e-55 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 191.02 E-value: 2.26e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 11 GRALQLPIAVLPVAALLLRFG--QPDLLNMP------------FIAQAGGSIFDNLALVFAIGVASSWSKD--------- 67
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGnlPNDTTGLPaggftgdsplaeILKQAGSAAFGILPILFAIGIAYGLAGGdgvagaagl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 68 ------SAGAAALAGAVGYFVMTKAMVTINPEINMGVLAGIITGLVGGAVYNRWSG---IKLPDFLSFFGGKRFVPIATG 138
Cdd:pfam02378 81 igllsfNLAAAISVALTAAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKnitIKLPDSLPFFVGKRFVPIITG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 139 F-FCLVLAAIFGYVWPPVQHGIHAGGEWIVSAG-ALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAagtvfhgdI 216
Cdd:pfam02378 161 FvTLLVIGPVLGLIWPAIQGGLNALGLLLIIAGgILGGLIFGFLERLLWPFGLHGAFIAIFWFLPIGGSNP--------I 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 217 NRFYAGDGTAGMFMSGFFpIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAITAFLTGVTEPLEFLFMFLAPLLYLLHA 296
Cdd:pfam02378 233 ANQQAYGAGAAHILTGGF-DVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPFFIPA 311
|
....
gi 446945811 297 ILTG 300
Cdd:pfam02378 312 ILAG 315
|
|
| PTS_EIIA_1 |
pfam00358 |
phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; |
501-620 |
4.68e-54 |
|
phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1;
Pssm-ID: 459779 [Multi-domain] Cd Length: 121 Bit Score: 180.65 E-value: 4.68e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 501 ELVSPITGEVVALDQVPDEAFASKAVGDGVAVKPTDKTVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALNG 580
Cdd:pfam00358 2 EIYSPVSGEVIPLSEVPDPVFSQKMMGDGVAIEPSEGKVYAPVDGTVTTVFPTKHAIGITTDDGVEVLIHIGIDTVKLKG 81
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 446945811 581 QGFKRLVEEGAEVSAGQPVLELDLDFLNANARSMISPVVC 620
Cdd:pfam00358 82 EGFESLVKEGDKVKAGDLLLEFDLEAIKAAGYSTTTPVVV 121
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
484-647 |
1.63e-37 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 147.94 E-value: 1.63e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 484 PAPAAKPQAVPNAVTIAELVSPITGEVVALDQVPDEAFASKAVGDGVAVKPTDKTVVSPAAGTIVKIFNTNHAFCLETEK 563
Cdd:PRK09824 463 VAPQEKTPEVITPPEQGGICSPMTGEVVPLEQVADTTFASGLLGKGIAILPSVGEVRSPVAGRVASLFATLHAIGLESDD 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 564 GAEIVVHMGIDTVALNGQGFKRLVEEGAEVSAGQPVLELDLDFLNANARSMISPVVCSNSDDFSALVIKADGHVVAGqTP 643
Cdd:PRK09824 543 GVEVLIHVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDDYTDVLPHATAQVSAG-EP 621
|
....
gi 446945811 644 LYEI 647
Cdd:PRK09824 622 LLSI 625
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
360-452 |
9.24e-27 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 103.98 E-value: 9.24e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 360 RMFNLKTPGREDkvdemVTEEANSNTEEGL-TQLATSYIAAVGGTDNLKAIDACITRLRLTVNDSARVNDAACKRLGASG 438
Cdd:TIGR00826 1 TRLRLKTPGREK-----ADEEAIAAGEGVKgVFTAAGQIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKLGAHG 75
|
90
....*....|....
gi 446945811 439 VVKLNkQTIQVIVG 452
Cdd:TIGR00826 76 VNPLQ-RAVQVISG 88
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
390-466 |
1.53e-26 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 102.89 E-value: 1.53e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446945811 390 TQLATSYIAAVGGTDNLKAIDACITRLRLTVNDSARVNDAACKRLGASGVVKLNKQtIQVIVGAKAESIGDEMKKVV 466
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKLGVKGVVKNGGQ-VQVIIGPGVDKVADEIEKLL 76
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
390-464 |
1.96e-23 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 94.14 E-value: 1.96e-23
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446945811 390 TQLATSYIAAVGGTDNLKAIDACITRLRLTVNDSARVNDAACKRLGASGVVKLNKQTIQVIVG-AKAESIGDEMKK 464
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGpGVADVYKEAIKL 76
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
334-466 |
5.25e-15 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 72.82 E-value: 5.25e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446945811 334 SNNVWMLLV---MGVVFFIIYFLLFSAVIRMFNLKTPGREDKVDEMVTE------EANSNTEEGLTQL--ATSYIAAVGG 402
Cdd:PRK09702 3 SNHADMMLTqiaIGLCFTLLYFVVFRTLILQFNMCTPGREDAEVKLYSKaeykasRGQTTAAEPKKELdqAAGILQALGG 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446945811 403 TDNLKAIDACITRLRLTVND-SARVNDAACKRLGASGVVKlNKQTIQVIVGAKAESIGDEMKKVV 466
Cdd:PRK09702 83 VGNISSINNCATRLRIALHDmSQTLDDEVFKKLGAHGVFR-SGDAIQVIIGLHVSQLREQLDSLI 146
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
396-424 |
4.35e-10 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 55.07 E-value: 4.35e-10
10 20
....*....|....*....|....*....
gi 446945811 396 YIAAVGGTDNLKAIDACITRLRLTVNDSA 424
Cdd:pfam00367 3 ILEALGGKENIKSVDHCATRLRLTVKDES 31
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
397-467 |
6.63e-07 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 52.37 E-value: 6.63e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446945811 397 IAAVGGTDNLKAIDACITRLRLTVNDSARVNDAACKRL-GASGVVKLNKQtIQVIVG-AKAESIGDEMKKVVA 467
Cdd:PRK09586 13 LTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIeGVKGVILSDDQ-VQVVLGpGKAQRAAKAMNELLG 84
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
392-452 |
4.20e-06 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 49.79 E-value: 4.20e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446945811 392 LATSYIAAVGGTDNLKAIDACITRLRLTVNDSARVNDAACKRL-GASGVVKLNKQTiQVIVG 452
Cdd:PRK09796 8 LARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIpGVLGVVRSDNQC-QVIIG 68
|
|
| |
