|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
93-441 |
7.83e-64 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 216.98 E-value: 7.83e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 93 ISHAATLSASDLHITPGRDSTDFTYleaRVHGELELLDIVRKDEGLELLGATY--SGMtDVikgtqFDPGVPQDARLAer 170
Cdd:COG2804 187 LEDAIKEGASDIHIEPYEKRLRVRF---RIDGVLREVLRLPKSLAPALVSRIKimANL-DI-----AERRLPQDGRIK-- 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 171 fLKLAGL---FgaRYSHYPCVGGLYAVLRLIkDDSQHIPTFSMLGYHPEQERAVRRMLQRPEGIVILSGPTGSGKSTTLR 247
Cdd:COG2804 256 -LRLGGReidL--RVSTLPTVYGEKVVLRIL-DKSAALLDLEQLGFSPDQLERLRRLIRRPHGIILVTGPTGSGKTTTLY 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 248 TAsaayLEQygFNDtggillPRRRLFTIESPPEGRIPGAIQTAV-----MDTAQGwvdsVKSALRLDPDAILNGEIRDHA 322
Cdd:COG2804 332 AA----LNE--LNT------PERNIITVEDPVEYQLPGINQVQVnpkigLTFASA----LRSILRQDPDVIMVGEIRDLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 323 SAITAIKAAMTGHLMLTTLHANDPINILERL-EMeGVQARMIADPqLfIGLLSQRLVQVICPHCRLPwHEVessrTDEER 401
Cdd:COG2804 396 TAEIAVQAALTGHLVLSTLHTNDAPSAITRLlDM-GVEPFLLASS-L-LGVLAQRLVRRLCPHCKEP-YEP----DPEEL 467
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 446803550 402 RLVE-NFCQPDAVYLRNHNGCPHC-WRGVNGRTVIAEVISPD 441
Cdd:COG2804 468 ERLGlPPEELAPLTFYRGVGCEHCnGTGYKGRTGIYELLVID 509
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
222-378 |
3.70e-54 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 179.22 E-value: 3.70e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 222 RRMLQRPEGIVILSGPTGSGKSTTLRtASAAYLEQygfndtggillPRRRLFTIESPPEGRIPGAIQTAVMDTAQ-GWVD 300
Cdd:cd01129 4 RRLIKRPHGLILVTGPTGSGKTTTLY-AMLRELNG-----------PERNIITIEDPVEYQIPGINQSQVNEKIGlTFAD 71
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446803550 301 SVKSALRLDPDAILNGEIRDHASAITAIKAAMTGHLMLTTLHANDPINILERLEMEGVQARMIADPqlFIGLLSQRLV 378
Cdd:cd01129 72 ALRAILRQDPDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASA--LRGVIAQRLV 147
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
84-436 |
5.63e-51 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 180.65 E-value: 5.63e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 84 PVQQKMLGYISHAATLSASDLHITPGRDSTDFTYleaRVHGELEllDIVRKDEGLEllgatySGMTDVIK-GTQFDPG-- 160
Cdd:TIGR02533 107 PVIRLVNSLLSRAVKERASDIHIEPFEKALVVRF---RVDGVLR--DVLSPPKKLH------AALVSRVKiMAKLNIAek 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 161 -VPQDARLAerfLKLAGL-FGARYSHYPCVGGLYAVLRLIKDDSQHIpTFSMLGYHPEQERAVRRMLQRPEGIVILSGPT 238
Cdd:TIGR02533 176 rLPQDGRIS---LRVGGRdIDIRVSTVPTSHGERVVMRLLDKTAVRL-DLETLGMSPELLSRFERLIRRPHGIILVTGPT 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 239 GSGKSTTLRTAsAAYLEQygfndtggillPRRRLFTIESPPEGRIPGAIQTAV-----MDTAQGwvdsVKSALRLDPDAI 313
Cdd:TIGR02533 252 GSGKTTTLYAA-LSRLNT-----------PERNILTVEDPVEYQIEGIGQIQVnpkigLTFAAG----LRAILRQDPDII 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 314 LNGEIRDHASAITAIKAAMTGHLMLTTLHANDPINILERLEMEGVQARMIADPQLfiGLLSQRLVQVICPHCRLPWHEve 393
Cdd:TIGR02533 316 MVGEIRDLETAQIAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLASSLL--GVLAQRLVRRLCPHCKEPYEA-- 391
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 446803550 394 ssrTDEERRLVeNFCQPDAVYLRNHNGCPHCWR-GVNGRTVIAE 436
Cdd:TIGR02533 392 ---TPEEIALF-GISPEGPINLYRPVGCPHCNHtGYLGRTGIYE 431
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
93-380 |
5.65e-48 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 166.69 E-value: 5.65e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 93 ISHAATLSASDLHI-TPGRDstdfTYLEARVHGEL-ELLDIvrKDEGLELLGATYSGMTdviKGTQFDPGVPQDARLAER 170
Cdd:pfam00437 4 PLEALDEGASDIHVePPERI----VWIRFRVDGVLrEIPFP--DADALARLISRIKVMA---RLDISERRPPQDGRLPLR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 171 FLKLAGLFgaRYSHYPCVGGLYAVLRLIKDDSQHIpTFSMLGYHPEQERAVRRMLQRPEGIVILSGPTGSGKSTTLRTAS 250
Cdd:pfam00437 75 IGGKGVRV--RVSTLPTAGGEKLVIRLLDPSNVAL-SLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAAL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 251 aayleqyGFNDTggillPRRRLFTIESPPEGRIPGAIQTAV-----MDTAqgwvDSVKSALRLDPDAILNGEIRDHASAI 325
Cdd:pfam00437 152 -------GELNT-----RDENIVTVEDPVEIQLEGINQVQLnaragVTFA----DLLRAILRQDPDRIMVGEIRDLETAE 215
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 446803550 326 TAIKAAMTGHLMLTTLHANDPINILERLEMEGVQARMIADPQLFIglLSQRLVQV 380
Cdd:pfam00437 216 IALQAANTGHLVLSTLHTNSAAGALTRLQDMGVPPFELASSLLLV--IAQRLVRK 268
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
93-379 |
7.81e-41 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 147.59 E-value: 7.81e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 93 ISHAATLSASDLHITPGRDSTDftyLEARVHGELELLDIVRKDEGLELLgaTY----SGMtdvikgtqfDPG---VPQ-- 163
Cdd:NF041000 4 IEEAIELRASDIHFLPREDGYQ---IKFRIGGGLIPYRELSLEEGQRLI--SYfkflAGM---------DIGekrRPQsg 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 164 --DARLAER--FLKLA--GLFGARYShypcvgglyAVLRLIKDDSQHIPTFsmlgYHPEQERAVRRMLQRPEGIVILSGP 237
Cdd:NF041000 70 afTYELNEQqiSLRLStvGDFLGRES---------LVIRLLYQLEQIKPQL----FFPEQFQLLKQLLQRRSGLILFSGP 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 238 TGSGKSTTLrtasaaY--LEQYGFNdtggillprRRLFTIESPPEGRIPGAIQTAVMDTAQ-GWVDSVKSALRLDPDAIL 314
Cdd:NF041000 137 TGSGKTTTM------YslARKLALN---------KQVITIEDPVEIKEPNFLQLQVNEKAGmTYDTLLKAALRHRPDILI 201
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446803550 315 NGEIRDHASAITAIKAAMTGHLMLTTLHANDPINILERL-EMeGVQARMIAdpQLFIGLLSQRLVQ 379
Cdd:NF041000 202 IGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAGVIYRLlEL-GISKEELE--QTLIGISYQRLIP 264
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
161-441 |
9.16e-39 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 147.00 E-value: 9.16e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 161 VPQDARLAerfLKLAGL-FGARYSHYPCVGGLYAVLRLIKDDSQHIpTFSMLGYHPEQERAVRRMLQRPEGIVILSGPTG 239
Cdd:PRK10436 153 LPQDGQFT---VELAGNaYSFRIATLPCRGGEKVVLRLLQQVQQAL-DLETLGMTPAQLAQFRQALQQPQGLILVTGPTG 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 240 SGKSTTLRTAsAAYLEQygfndtggillPRRRLFTIESPPEGRIPGAIQTAVMDTAQGWVDSVKSA-LRLDPDAILNGEI 318
Cdd:PRK10436 229 SGKTVTLYSA-LQTLNT-----------AQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRAlLRQDPDVIMVGEI 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 319 RDHASAITAIKAAMTGHLMLTTLHANDPINILERLEMEGVQARMIADP-QLFIgllSQRLVQVICPHCRLPwhevessrT 397
Cdd:PRK10436 297 RDGETAEIAIKAAQTGHLVLSTLHTNSTSETLVRLQQMGIARWMLASAlKLVI---AQRLVRKLCPHCRQQ--------A 365
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 446803550 398 DEERRLVENFCQPDavyLRNHN--GCPHCWRGVNGRTVIAEV--ISPD 441
Cdd:PRK10436 366 SEPIHLPPNIWPGP---LPHWQavGCEHCYHGYYGRTALFEVlpITPV 410
|
|
| DEXDc |
smart00487 |
DEAD-like helicases superfamily; |
215-270 |
1.36e-04 |
|
DEAD-like helicases superfamily;
Pssm-ID: 214692 [Multi-domain] Cd Length: 201 Bit Score: 42.86 E-value: 1.36e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 446803550 215 PEQERAVRRMLQRPEGiVILSGPTGSGKSTTLrTASAAYLEQYGFNDTGGILLPRR 270
Cdd:smart00487 11 PYQKEAIEALLSGLRD-VILAAPTGSGKTLAA-LLPALEALKRGKGGRVLVLVPTR 64
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
93-441 |
7.83e-64 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 216.98 E-value: 7.83e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 93 ISHAATLSASDLHITPGRDSTDFTYleaRVHGELELLDIVRKDEGLELLGATY--SGMtDVikgtqFDPGVPQDARLAer 170
Cdd:COG2804 187 LEDAIKEGASDIHIEPYEKRLRVRF---RIDGVLREVLRLPKSLAPALVSRIKimANL-DI-----AERRLPQDGRIK-- 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 171 fLKLAGL---FgaRYSHYPCVGGLYAVLRLIkDDSQHIPTFSMLGYHPEQERAVRRMLQRPEGIVILSGPTGSGKSTTLR 247
Cdd:COG2804 256 -LRLGGReidL--RVSTLPTVYGEKVVLRIL-DKSAALLDLEQLGFSPDQLERLRRLIRRPHGIILVTGPTGSGKTTTLY 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 248 TAsaayLEQygFNDtggillPRRRLFTIESPPEGRIPGAIQTAV-----MDTAQGwvdsVKSALRLDPDAILNGEIRDHA 322
Cdd:COG2804 332 AA----LNE--LNT------PERNIITVEDPVEYQLPGINQVQVnpkigLTFASA----LRSILRQDPDVIMVGEIRDLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 323 SAITAIKAAMTGHLMLTTLHANDPINILERL-EMeGVQARMIADPqLfIGLLSQRLVQVICPHCRLPwHEVessrTDEER 401
Cdd:COG2804 396 TAEIAVQAALTGHLVLSTLHTNDAPSAITRLlDM-GVEPFLLASS-L-LGVLAQRLVRRLCPHCKEP-YEP----DPEEL 467
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 446803550 402 RLVE-NFCQPDAVYLRNHNGCPHC-WRGVNGRTVIAEVISPD 441
Cdd:COG2804 468 ERLGlPPEELAPLTFYRGVGCEHCnGTGYKGRTGIYELLVID 509
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
222-378 |
3.70e-54 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 179.22 E-value: 3.70e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 222 RRMLQRPEGIVILSGPTGSGKSTTLRtASAAYLEQygfndtggillPRRRLFTIESPPEGRIPGAIQTAVMDTAQ-GWVD 300
Cdd:cd01129 4 RRLIKRPHGLILVTGPTGSGKTTTLY-AMLRELNG-----------PERNIITIEDPVEYQIPGINQSQVNEKIGlTFAD 71
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446803550 301 SVKSALRLDPDAILNGEIRDHASAITAIKAAMTGHLMLTTLHANDPINILERLEMEGVQARMIADPqlFIGLLSQRLV 378
Cdd:cd01129 72 ALRAILRQDPDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASA--LRGVIAQRLV 147
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
84-436 |
5.63e-51 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 180.65 E-value: 5.63e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 84 PVQQKMLGYISHAATLSASDLHITPGRDSTDFTYleaRVHGELEllDIVRKDEGLEllgatySGMTDVIK-GTQFDPG-- 160
Cdd:TIGR02533 107 PVIRLVNSLLSRAVKERASDIHIEPFEKALVVRF---RVDGVLR--DVLSPPKKLH------AALVSRVKiMAKLNIAek 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 161 -VPQDARLAerfLKLAGL-FGARYSHYPCVGGLYAVLRLIKDDSQHIpTFSMLGYHPEQERAVRRMLQRPEGIVILSGPT 238
Cdd:TIGR02533 176 rLPQDGRIS---LRVGGRdIDIRVSTVPTSHGERVVMRLLDKTAVRL-DLETLGMSPELLSRFERLIRRPHGIILVTGPT 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 239 GSGKSTTLRTAsAAYLEQygfndtggillPRRRLFTIESPPEGRIPGAIQTAV-----MDTAQGwvdsVKSALRLDPDAI 313
Cdd:TIGR02533 252 GSGKTTTLYAA-LSRLNT-----------PERNILTVEDPVEYQIEGIGQIQVnpkigLTFAAG----LRAILRQDPDII 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 314 LNGEIRDHASAITAIKAAMTGHLMLTTLHANDPINILERLEMEGVQARMIADPQLfiGLLSQRLVQVICPHCRLPWHEve 393
Cdd:TIGR02533 316 MVGEIRDLETAQIAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLASSLL--GVLAQRLVRRLCPHCKEPYEA-- 391
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 446803550 394 ssrTDEERRLVeNFCQPDAVYLRNHNGCPHCWR-GVNGRTVIAE 436
Cdd:TIGR02533 392 ---TPEEIALF-GISPEGPINLYRPVGCPHCNHtGYLGRTGIYE 431
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
93-380 |
5.65e-48 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 166.69 E-value: 5.65e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 93 ISHAATLSASDLHI-TPGRDstdfTYLEARVHGEL-ELLDIvrKDEGLELLGATYSGMTdviKGTQFDPGVPQDARLAER 170
Cdd:pfam00437 4 PLEALDEGASDIHVePPERI----VWIRFRVDGVLrEIPFP--DADALARLISRIKVMA---RLDISERRPPQDGRLPLR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 171 FLKLAGLFgaRYSHYPCVGGLYAVLRLIKDDSQHIpTFSMLGYHPEQERAVRRMLQRPEGIVILSGPTGSGKSTTLRTAS 250
Cdd:pfam00437 75 IGGKGVRV--RVSTLPTAGGEKLVIRLLDPSNVAL-SLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAAL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 251 aayleqyGFNDTggillPRRRLFTIESPPEGRIPGAIQTAV-----MDTAqgwvDSVKSALRLDPDAILNGEIRDHASAI 325
Cdd:pfam00437 152 -------GELNT-----RDENIVTVEDPVEIQLEGINQVQLnaragVTFA----DLLRAILRQDPDRIMVGEIRDLETAE 215
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 446803550 326 TAIKAAMTGHLMLTTLHANDPINILERLEMEGVQARMIADPQLFIglLSQRLVQV 380
Cdd:pfam00437 216 IALQAANTGHLVLSTLHTNSAAGALTRLQDMGVPPFELASSLLLV--IAQRLVRK 268
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
93-379 |
7.81e-41 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 147.59 E-value: 7.81e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 93 ISHAATLSASDLHITPGRDSTDftyLEARVHGELELLDIVRKDEGLELLgaTY----SGMtdvikgtqfDPG---VPQ-- 163
Cdd:NF041000 4 IEEAIELRASDIHFLPREDGYQ---IKFRIGGGLIPYRELSLEEGQRLI--SYfkflAGM---------DIGekrRPQsg 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 164 --DARLAER--FLKLA--GLFGARYShypcvgglyAVLRLIKDDSQHIPTFsmlgYHPEQERAVRRMLQRPEGIVILSGP 237
Cdd:NF041000 70 afTYELNEQqiSLRLStvGDFLGRES---------LVIRLLYQLEQIKPQL----FFPEQFQLLKQLLQRRSGLILFSGP 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 238 TGSGKSTTLrtasaaY--LEQYGFNdtggillprRRLFTIESPPEGRIPGAIQTAVMDTAQ-GWVDSVKSALRLDPDAIL 314
Cdd:NF041000 137 TGSGKTTTM------YslARKLALN---------KQVITIEDPVEIKEPNFLQLQVNEKAGmTYDTLLKAALRHRPDILI 201
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446803550 315 NGEIRDHASAITAIKAAMTGHLMLTTLHANDPINILERL-EMeGVQARMIAdpQLFIGLLSQRLVQ 379
Cdd:NF041000 202 IGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAGVIYRLlEL-GISKEELE--QTLIGISYQRLIP 264
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
161-441 |
9.16e-39 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 147.00 E-value: 9.16e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 161 VPQDARLAerfLKLAGL-FGARYSHYPCVGGLYAVLRLIKDDSQHIpTFSMLGYHPEQERAVRRMLQRPEGIVILSGPTG 239
Cdd:PRK10436 153 LPQDGQFT---VELAGNaYSFRIATLPCRGGEKVVLRLLQQVQQAL-DLETLGMTPAQLAQFRQALQQPQGLILVTGPTG 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 240 SGKSTTLRTAsAAYLEQygfndtggillPRRRLFTIESPPEGRIPGAIQTAVMDTAQGWVDSVKSA-LRLDPDAILNGEI 318
Cdd:PRK10436 229 SGKTVTLYSA-LQTLNT-----------AQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRAlLRQDPDVIMVGEI 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 319 RDHASAITAIKAAMTGHLMLTTLHANDPINILERLEMEGVQARMIADP-QLFIgllSQRLVQVICPHCRLPwhevessrT 397
Cdd:PRK10436 297 RDGETAEIAIKAAQTGHLVLSTLHTNSTSETLVRLQQMGIARWMLASAlKLVI---AQRLVRKLCPHCRQQ--------A 365
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 446803550 398 DEERRLVENFCQPDavyLRNHN--GCPHCWRGVNGRTVIAEV--ISPD 441
Cdd:PRK10436 366 SEPIHLPPNIWPGP---LPHWQavGCEHCYHGYYGRTALFEVlpITPV 410
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
93-392 |
1.76e-38 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 143.31 E-value: 1.76e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 93 ISHAATLSASDLHITPGRdstdftYLEARVHGELELLD--IVRKDEGLELLGATYS--GMTDVIKGTQFDP--GVPQDAR 166
Cdd:COG2805 9 LKLAVEQGASDLHLTVGS------PPMLRIDGELVPLDdpPLTPEDLEALLKEILTeeQRERLEEEGELDFsySLPGLGR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 167 LaerflklaglfgaRYSHYPCVGGLYAVLRLIkddSQHIPTFSMLGYHPEqeraVRRMLQRPEGIVILSGPTGSGKSTTL 246
Cdd:COG2805 83 F-------------RVNIFRQRGGVAAVLRLI---PSEIPTLEELGLPPV----LKELAELPRGLVLVTGPTGSGKSTTL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 247 rtasAAYLEQygFNDTGgillpRRRLFTIESPPEGRIPGA----IQTAV-MDTAqGWVDSVKSALRLDPDAILNGEIRDH 321
Cdd:COG2805 143 ----AAMIDY--INETR-----AKHIITIEDPIEFVHKHKksliNQREVgRDTP-SFANALRAALREDPDVILVGEMRDL 210
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446803550 322 ASAITAIKAAMTGHLMLTTLHANDPINILERL-----EMEGVQAR-MIAdpQLFIGLLSQRLVQVICPHCRLPWHEV 392
Cdd:COG2805 211 ETIEAALTAAETGHLVFATLHTNSAAQTIDRIidvfpPEEQAQIRsQLA--ESLRGVISQRLLPRADGGGRVAAREI 285
|
|
| pilT_fam |
TIGR01420 |
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to ... |
93-378 |
2.13e-30 |
|
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. [Cell envelope, Surface structures, Cellular processes, Chemotaxis and motility]
Pssm-ID: 273613 Cd Length: 343 Bit Score: 120.89 E-value: 2.13e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 93 ISHAATLSASDLHITPGrdstdfTYLEARVHGELELLDIVRKDEGlELLGATYSGMTDvikgtqfdpgvpqdaRLAERFL 172
Cdd:TIGR01420 6 LREAVKLGASDIHLTAG------APPAMRIDGDLVRIEFEPLTPE-DTQKLAREILSE---------------KQREEFE 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 173 K---------LAGLFGARYSHYPCVGGLYAVLRLIkddSQHIPTFSMLGYHPeqerAVRRMLQRPEGIVILSGPTGSGKS 243
Cdd:TIGR01420 64 EngeldfsfsLPGVGRFRVNAFYQRGGVALVLRLI---PSKIPTFEELGLPP----VLRELAERPRGLILVTGPTGSGKS 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 244 TTLrtasAAYLEQYGFNDTGGILlprrrlfTIESPPEGRIPGA----IQTAV-MDTaQGWVDSVKSALRLDPDAILNGEI 318
Cdd:TIGR01420 137 TTL----ASMIDYINKNKAYHII-------TIEDPIEYVHTNKrsliNQREVgEDT-LSFANALRAALREDPDVILIGEM 204
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446803550 319 RDHASAITAIKAAMTGHLMLTTLHANDPINILERL-----EMEGVQAR-MIADPqlFIGLLSQRLV 378
Cdd:TIGR01420 205 RDLETVELALTAAETGHLVFGTLHTNSAAQTIERIidvfpAEEQEQIRtQLAES--LVAIISQRLL 268
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
205-392 |
3.55e-29 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 114.56 E-value: 3.55e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 205 IPTFSMLGYHPeqerAVRRMLQRPEGIVILSGPTGSGKSTTLrtasAAYLEQYGFNDTGGILlprrrlfTIESPPEGRIP 284
Cdd:cd01131 1 IPTFEELGLPP----VLKDLALKPRGLVLVTGPTGSGKSTTL----AAMIDYINETRSKHII-------TIEDPIEFVHK 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 285 --GAI--QTAV-MDTAqGWVDSVKSALRLDPDAILNGEIRDHASAITAIKAAMTGHLMLTTLHANDPINILERL-----E 354
Cdd:cd01131 66 hkKSLinQREVgRDTE-SFAAALRAALREDPDVILVGEMRDLETIELALTAAETGHLVFSTLHTNSAAQTIDRIidvfpP 144
|
170 180 190
....*....|....*....|....*....|....*....
gi 446803550 355 MEGVQAR-MIADpqLFIGLLSQRLVQVICPHCRLPWHEV 392
Cdd:cd01131 145 EQQEQVRiQLAS--SLRGVISQRLLPKKDGGGRVAAFEI 181
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
229-378 |
2.76e-22 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 93.98 E-value: 2.76e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 229 EGIVILSGPTGSGKSTTLrtasAAYLEQYGFNDTggillPRRRLFTIESPPE---GRIPGA--------IQTAVMDTAQG 297
Cdd:cd19516 11 EGLVYVAGATGSGKSTLL----AAIYRYILENDP-----PDRKIITYEDPIEfvyDGIKSKhsiivqsqIPRHFKSFAKA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 298 wvdsVKSALRLDPDAILNGEIRDHASAITAIKAAMTGHLMLTTLHANDPINILERL-------EMEGVQARMIADPQLFI 370
Cdd:cd19516 82 ----VREALRRKPSLIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLislfppeERDAAAYDLLSTLRFII 157
|
....*...
gi 446803550 371 gllSQRLV 378
Cdd:cd19516 158 ---VQRLV 162
|
|
| PilU |
COG5008 |
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures]; |
193-378 |
1.37e-21 |
|
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
Pssm-ID: 444032 Cd Length: 370 Bit Score: 96.32 E-value: 1.37e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 193 AVLRLIKDDsqhIPTFSMLGYhPE--QERAvrrMLQRpeGIVILSGPTGSGKSTTLrtasAAYLEQYGFNDTGGILlprr 270
Cdd:COG5008 94 MVLRRIETE---IPTLDELGL-PPvlKDLI---MEKR--GLVLFVGATGSGKSTTL----AAMIDHRNENSSGHIL---- 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 271 rlfTIESPPE------GRIpgAIQTAV-MDTaQGWVDSVKSALRLDPDAILNGEIRDHASAITAIKAAMTGHLMLTTLHA 343
Cdd:COG5008 157 ---TIEDPIEfvhkhkKSI--VTQREVgVDT-ESYEVALKNALRQAPDVILIGEIRDRETMEHAIAFAETGHLCLATLHA 230
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 446803550 344 NDpinilerlemeGVQA--RMI------ADPQLFIGL-------LSQRLV 378
Cdd:COG5008 231 NN-----------ANQAldRIInffpeeRRPQLLMDLslnlraiVSQRLV 269
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
217-365 |
4.22e-18 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 81.82 E-value: 4.22e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 217 QERAVRRMLQRPEGIVIlSGPTGSGKSTTLRTASAAyleqygfndtggiLLPRRRLFTIESPPEGRIP-----------G 285
Cdd:cd01130 1 MAAFLRLAVRARKNILI-SGGTGSGKTTLLNALLSF-------------IPPDERIVTIEDTRELQLPhpnvvhlltrpG 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 286 AIQTAVMDTAqgwvDSVKSALRLDPDAILNGEIRDHAsAITAIKAAMTGHL-MLTTLHANDPINILERLEMEGVQARMIA 364
Cdd:cd01130 67 GGEKGEVTMA----DLLKAALRMRPDRIIVGEVRGGE-AYDMLQAMNTGHPgSITTIHANSAEDAIDRLATLVLEAGVNL 141
|
.
gi 446803550 365 D 365
Cdd:cd01130 142 D 142
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
220-381 |
8.49e-17 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 77.82 E-value: 8.49e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 220 AVRRMLQRPeGIVILSGPTGSGKSTTLRtasaAYLEQygfndtggiLLPRRRLFTIESPPEGRIP---GAIQTAVmDTAQ 296
Cdd:cd19477 2 AIKDGIAIG-KNVIVCGGTGSGKTTYIK----SILEF---------IPKEERIISIEDTEEIVFKhhkNYTQLFF-GGNI 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 297 GWVDSVKSALRLDPDAILNGEIRDhASAITAIKAAMTGH-LMLTTLHANDPINILERLEMEGVQ---ARMI---ADPQLF 369
Cdd:cd19477 67 TSADCLKSCLRQRPDRIILGELRS-SEAYDFYNVLCSGHkGTLTTLHAGSSEEAFIRLAN*SSSnsaARNIkfeSLIEGF 145
|
170
....*....|....*.
gi 446803550 370 ----IGLLSQRLVQVI 381
Cdd:cd19477 146 kdliDGIVHINHHKQC 161
|
|
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
195-353 |
4.76e-14 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 73.69 E-value: 4.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 195 LRLIKDDsqhIPTFSMLGYHPEQERAVRRMlqrpEGIVILSGPTGSGKSTTLrtasAAYLEQYGFNDtggillPRRRLFT 274
Cdd:TIGR02525 122 LRVIPSD---IPDLKQMGIEPDLFNSLLPA----AGLGLICGETGSGKSTLA----ASIYQHCGETY------PDRKIVT 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 275 IESPPEGRI--PGAI----QTAVMDTAQGWVDSVKSALRLDPDAILNGEIRDHASAITAIKAAMTGHLMLTTLHANDPIN 348
Cdd:TIGR02525 185 YEDPIEYILgsPDDLlppaQSQIGRDVDSFANGIRLALRRAPKIIGVGEIRDLETFQAAVLAGQSGHFCLGTLHVKSPGE 264
|
....*
gi 446803550 349 ILERL 353
Cdd:TIGR02525 265 AISRC 269
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
232-356 |
2.04e-13 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 72.04 E-value: 2.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 232 VILSGPTGSGKSTTLrtasaayleqygfndtGGILL---PRRRLFTIESPPEGRIPG--AIQTAVMDTAQGWV------D 300
Cdd:COG0630 293 VLVAGGTASGKTTLL----------------NALLSfipPDAKIVTIEDTRELNLPHenWISLVTRESFGGEEgdvtmfD 356
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 446803550 301 SVKSALRLDPDAILNGEIRDhASAITAIKAAMTGHLMLTTLHANDPINILERLEME 356
Cdd:COG0630 357 LLKAALRQRPDYIVVGEVRG-EEAYTLFQAMATGHGVLSTFHADSVESAINRLTSP 411
|
|
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
232-362 |
6.53e-12 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 67.11 E-value: 6.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 232 VILSGPTGSGKSTTLRTASAAyleqygfndtggiLLPRRRLFTIESPPEGRIP-----------------GAIQTAvmdt 294
Cdd:COG4962 185 ILVSGGTGSGKTTLLNALSGF-------------IPPDERIVTIEDAAELQLQhphvvrletrppnvegaGEVTLR---- 247
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446803550 295 aqgwvDSVKSALRLDPDAILNGEIRDhASAITAIKAAMTGHL-MLTTLHANDPINILERLEMEGVQARM 362
Cdd:COG4962 248 -----DLVRNALRMRPDRIIVGEVRG-AEALDMLQAMNTGHDgSMSTLHANSARDALARLETLALMAGE 310
|
|
| PRK13833 |
PRK13833 |
conjugal transfer protein TrbB; Provisional |
217-354 |
2.76e-10 |
|
conjugal transfer protein TrbB; Provisional
Pssm-ID: 172360 [Multi-domain] Cd Length: 323 Bit Score: 61.74 E-value: 2.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 217 QERAVRRMLQRPEGIVIlSGPTGSGKSTTLRTASAAYLEQygfndtggilLPRRRLFTIESPPEgrIPGAIQTAVMDTAQ 296
Cdd:PRK13833 133 QASVIRSAIDSRLNIVI-SGGTGSGKTTLANAVIAEIVAS----------APEDRLVILEDTAE--IQCAAENAVALHTS 199
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446803550 297 GWVDS---VKSALRLDPDAILNGEIRDHAsAITAIKAAMTGHL-MLTTLHANDPINILERLE 354
Cdd:PRK13833 200 DTVDMarlLKSTMRLRPDRIIVGEVRDGA-ALTLLKAWNTGHPgGVTTIHSNTAMSALRRLE 260
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
232-353 |
1.32e-07 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 53.36 E-value: 1.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 232 VILSGPTGSGKSTTLRTASAAyleqygfndtggiLLPRRRLFTIESPPEGRIPGAIQTAVMDTAQGW----VDS---VKS 304
Cdd:PRK13851 165 MLLCGPTGSGKTTMSKTLISA-------------IPPQERLITIEDTLELVIPHENHVRLLYSKNGAglgaVTAehlLQA 231
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 446803550 305 ALRLDPDAILNGEIRDHAsAITAIKAAMTGHL-MLTTLHANDPINILERL 353
Cdd:PRK13851 232 SLRMRPDRILLGEMRDDA-AWAYLSEVVSGHPgSISTIHGANPVQGFKKL 280
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
215-355 |
1.41e-07 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 53.20 E-value: 1.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 215 PEQERAVRRMLQRPEGIVILSGpTGSGKsTTLrtASAAYLEQYGFNdtggillPRRRLFTIESPpegripGAIQTAVMDT 294
Cdd:PRK13894 135 AAQREAIIAAVRAHRNILVIGG-TGSGK-TTL--VNAIINEMVIQD-------PTERVFIIEDT------GEIQCAAENY 197
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 295 AQgWVDSV--------KSALRLDPDAILNGEIRDhASAITAIKAAMTGHL-MLTTLHANDPINILERLEM 355
Cdd:PRK13894 198 VQ-YHTSIdvnmtallKTTLRMRPDRILVGEVRG-PEALDLLMAWNTGHEgGAATLHANNAKAGLDRLKS 265
|
|
| AAA_30 |
pfam13604 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
215-368 |
4.11e-07 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. There is a Walker A and Walker B.
Pssm-ID: 433343 [Multi-domain] Cd Length: 191 Bit Score: 50.26 E-value: 4.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 215 PEQERAVRRMLQRPEGIVILSGPTGSGKSTTLRTASAAYlEQYGFndtggillprrrlftiesPPEGRIPGAIQTAVM-- 292
Cdd:pfam13604 4 AEQAAAVRALLTSGDRVAVLVGPAGTGKTTALKALREAW-EAAGY------------------RVIGLAPTGRAAKVLge 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 293 ------DTAQGWVDSVKSALRLDPDAILngeIRDHASaitaikaamtghlMLTTLHANDpinILERLEMEGVQARMIADP 366
Cdd:pfam13604 65 elgipaDTIAKLLHRLGGRAGLDPGTLL---IVDEAG-------------MVGTRQMAR---LLKLAEDAGARVILVGDP 125
|
...
gi 446803550 367 -QL 368
Cdd:pfam13604 126 rQL 128
|
|
| PRK13900 |
PRK13900 |
type IV secretion system ATPase VirB11; Provisional |
232-360 |
1.31e-05 |
|
type IV secretion system ATPase VirB11; Provisional
Pssm-ID: 184381 Cd Length: 332 Bit Score: 47.06 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 232 VILSGPTGSGKSTtlrtasaayleqygFNDTGGILLPRR-RLFTIESPPE---GRIPGAIQTAVMDTAQGWV-----DSV 302
Cdd:PRK13900 163 IIISGGTSTGKTT--------------FTNAALREIPAIeRLITVEDAREivlSNHPNRVHLLASKGGQGRAkvttqDLI 228
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 446803550 303 KSALRLDPDAILNGEIRDhASAITAIKAAMTGHL-MLTTLHANDPINILERLEMEGVQA 360
Cdd:PRK13900 229 EACLRLRPDRIIVGELRG-AEAFSFLRAINTGHPgSISTLHADSPAMAIEQLKLMVMQA 286
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
215-256 |
9.78e-05 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 44.97 E-value: 9.78e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 446803550 215 PEQERAVRRMLQRpEGIVILSGPTGSGKSTTLRTASAAYLEQ 256
Cdd:COG0507 127 DEQREAVALALTT-RRVSVLTGGAGTGKTTTLRALLAALEAL 167
|
|
| DEXDc |
smart00487 |
DEAD-like helicases superfamily; |
215-270 |
1.36e-04 |
|
DEAD-like helicases superfamily;
Pssm-ID: 214692 [Multi-domain] Cd Length: 201 Bit Score: 42.86 E-value: 1.36e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 446803550 215 PEQERAVRRMLQRPEGiVILSGPTGSGKSTTLrTASAAYLEQYGFNDTGGILLPRR 270
Cdd:smart00487 11 PYQKEAIEALLSGLRD-VILAAPTGSGKTLAA-LLPALEALKRGKGGRVLVLVPTR 64
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
216-253 |
2.07e-03 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 38.69 E-value: 2.07e-03
10 20 30
....*....|....*....|....*....|....*...
gi 446803550 216 EQERAVRRMLQRPegIVILSGPTGSGKSTTLRTASAAY 253
Cdd:cd17933 1 EQKAAVRLVLRNR--VSVLTGGAGTGKTTTLKALLAAL 36
|
|
| AAA_19 |
pfam13245 |
AAA domain; |
217-271 |
3.00e-03 |
|
AAA domain;
Pssm-ID: 433059 [Multi-domain] Cd Length: 136 Bit Score: 37.97 E-value: 3.00e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 446803550 217 QERAVRRMLQRPegIVILSGPTGSGKSTTLRTASAAYLEQYGFNDTGGILLPRRR 271
Cdd:pfam13245 1 QREAVRTALPSK--VVLLTGGPGTGKTTTIRHIVALLVALGGVSFPILLAAPTGR 53
|
|
| MYSc_Myo17 |
cd14879 |
class XVII myosin, motor domain; This fungal myosin which is also known as chitin synthase ... |
167-255 |
3.52e-03 |
|
class XVII myosin, motor domain; This fungal myosin which is also known as chitin synthase uses its motor domain to tether its vesicular cargo to peripheral actin. It works in opposition to dynein, contributing to the retention of Mcs1 vesicles at the site of cell growth and increasing vesicle fusion necessary for polarized growth. Class 17 myosins consist of a N-terminal myosin motor domain with Cyt-b5, chitin synthase 2, and a DEK_C domains at it C-terminus. The chitin synthase region contains several transmembrane domains by which myosin 17 is thought to bind secretory vesicles. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276845 [Multi-domain] Cd Length: 647 Bit Score: 39.84 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 167 LAERFLklAGLFGAR--YSHYPCVGGlYAVLRLIKDDSQH----------IPTFSMLGYHPEQ--ERAVRRMLQRPEG-I 231
Cdd:cd14879 10 LASRFR--SDLPYTRlgSSALVAVNP-YKYLSSNSDASLGeygseyydttSGSKEPLPPHAYDlaARAYLRMRRRSEDqA 86
|
90 100
....*....|....*....|....
gi 446803550 232 VILSGPTGSGKSTTLRTASAAYLE 255
Cdd:cd14879 87 VVFLGETGSGKSESRRLLLRQLLR 110
|
|
| PTZ00202 |
PTZ00202 |
tuzin; Provisional |
171-249 |
4.37e-03 |
|
tuzin; Provisional
Pssm-ID: 240312 Cd Length: 550 Bit Score: 39.77 E-value: 4.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446803550 171 FLKLAGLFGARYSHYPCVGGLY----AVLRLIKDDSQHIPTFSMLGYHPEQ-------ERAVRRMLQRPEG----IVILS 235
Cdd:PTZ00202 213 LLGVASVFGWNFKNYRTQQRSYqlkvAVSTLTQPLNPRPSTLQSAPAVIRQfvsreaeESWVRQVLRRLDTahprIVVFT 292
|
90
....*....|....
gi 446803550 236 GPTGSGKSTTLRTA 249
Cdd:PTZ00202 293 GFRGCGKSSLCRSA 306
|
|
| CMPK |
cd02020 |
Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine ... |
231-268 |
7.39e-03 |
|
Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Pssm-ID: 238978 [Multi-domain] Cd Length: 147 Bit Score: 37.08 E-value: 7.39e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 446803550 231 IVILSGPTGSGKSTTLRTASaaylEQYGFN--DTGGILLP 268
Cdd:cd02020 1 IIAIDGPAGSGKSTVAKLLA----KKLGLPylDTGGIRTE 36
|
|
| DEXDc2 |
smart00488 |
DEAD-like helicases superfamily; |
213-258 |
8.49e-03 |
|
DEAD-like helicases superfamily;
Pssm-ID: 214693 [Multi-domain] Cd Length: 289 Bit Score: 38.13 E-value: 8.49e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 446803550 213 YHPEQE---RAVRRMLQRpEGIVILSGPTGSGKSTTLRTASAAYLEQYG 258
Cdd:smart00488 9 PYPIQYefmEELKRVLDR-GKIGILESPTGTGKTLSLLCLTLTWLRSFP 56
|
|
| |
