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Conserved domains on  [gi|446800041|ref|WP_000877297|]
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MULTISPECIES: DUF1090 domain-containing protein [Salmonella]

Protein Classification

DUF1090 domain-containing protein( domain architecture ID 10534440)

DUF1090 domain-containing protein similar to Escherichia coli YqjC

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1090 pfam06476
Protein of unknown function (DUF1090); This family consists of several bacterial proteins of ...
 8-116 4.37e-30

Protein of unknown function (DUF1090); This family consists of several bacterial proteins of unknown function and is known as YqjC in E. coli.


:

Pssm-ID: 428965 [Multi-domain]  Cd Length: 109  Bit Score: 103.86  E-value: 4.37e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446800041    8 AITLFTLSAGSYANSLCQEKEQDIQKEISYAEKHNNQRRIEGLNKALSEVRANCTDSKLRAEHQKKIAEQKEEVAERQRD 87
Cdd:pfam06476   1 LLASLLAAAAAAALSGCAAKRQAIEKQLSYAKAHGNQHRVAGLEKALAEVRAHCTDAGLRAERQQKVAEKREEVAEREAE 80

                          90       100
                  ....*....|....*....|....*....
gi 446800041   88 LAEAKAKGDADKIDKRERKLAEAQDELKK 116
Cdd:pfam06476  81 LAEAQAKGDADKIAKRQRKLAEARQELKE 109
 
Name Accession Description Interval E-value
DUF1090 pfam06476
Protein of unknown function (DUF1090); This family consists of several bacterial proteins of ...
 8-116 4.37e-30

Protein of unknown function (DUF1090); This family consists of several bacterial proteins of unknown function and is known as YqjC in E. coli.


Pssm-ID: 428965 [Multi-domain]  Cd Length: 109  Bit Score: 103.86  E-value: 4.37e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446800041    8 AITLFTLSAGSYANSLCQEKEQDIQKEISYAEKHNNQRRIEGLNKALSEVRANCTDSKLRAEHQKKIAEQKEEVAERQRD 87
Cdd:pfam06476   1 LLASLLAAAAAAALSGCAAKRQAIEKQLSYAKAHGNQHRVAGLEKALAEVRAHCTDAGLRAERQQKVAEKREEVAEREAE 80

                          90       100
                  ....*....|....*....|....*....
gi 446800041   88 LAEAKAKGDADKIDKRERKLAEAQDELKK 116
Cdd:pfam06476  81 LAEAQAKGDADKIAKRQRKLAEARQELKE 109
valS PRK05729
valyl-tRNA synthetase; Reviewed
 64-120 3.64e-03

valyl-tRNA synthetase; Reviewed


Pssm-ID: 235582 [Multi-domain]  Cd Length: 874  Bit Score: 35.85  E-value: 3.64e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 446800041  64 SKLRAEHQKKIAEQKEEVAERQRDLAEAK--AKGDADKIDKRERKLAEAQDELKKLEAR 120
Cdd:PRK05729 810 EAELARLEKELAKLEKEIERVEKKLSNEGfvAKAPEEVVEKEREKLAEYEEKLAKLKER 868
 
Name Accession Description Interval E-value
DUF1090 pfam06476
Protein of unknown function (DUF1090); This family consists of several bacterial proteins of ...
 8-116 4.37e-30

Protein of unknown function (DUF1090); This family consists of several bacterial proteins of unknown function and is known as YqjC in E. coli.


Pssm-ID: 428965 [Multi-domain]  Cd Length: 109  Bit Score: 103.86  E-value: 4.37e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446800041    8 AITLFTLSAGSYANSLCQEKEQDIQKEISYAEKHNNQRRIEGLNKALSEVRANCTDSKLRAEHQKKIAEQKEEVAERQRD 87
Cdd:pfam06476   1 LLASLLAAAAAAALSGCAAKRQAIEKQLSYAKAHGNQHRVAGLEKALAEVRAHCTDAGLRAERQQKVAEKREEVAEREAE 80

                          90       100
                  ....*....|....*....|....*....
gi 446800041   88 LAEAKAKGDADKIDKRERKLAEAQDELKK 116
Cdd:pfam06476  81 LAEAQAKGDADKIAKRQRKLAEARQELKE 109
DcaP pfam19577
DcaP outer membrane protein; This entry includes DcaP which is the most abundant outer ...
 7-72 1.55e-03

DcaP outer membrane protein; This entry includes DcaP which is the most abundant outer membrane channel protein in Acinetobacter baumannii. X-ray crystallography reveals a trimeric porin-like structure and suggests dicarboxylic acids as potential substrates.


Pssm-ID: 437409 [Multi-domain]  Cd Length: 410  Bit Score: 36.64  E-value: 1.55e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446800041    7 LAITLFTLSAGSYANSLCQEKEQDIQKEISYAEKHNNQRRIEGLNKA--LSEVRANCTDSKLRAEHQK 72
Cdd:pfam19577   1 MSITLQQAKAESEDNSALNEKIIKLQQQIDYLIERQNLNQNNGLNKAleLSQNKTSNTDKPISADQTK 68
valS PRK05729
valyl-tRNA synthetase; Reviewed
 64-120 3.64e-03

valyl-tRNA synthetase; Reviewed


Pssm-ID: 235582 [Multi-domain]  Cd Length: 874  Bit Score: 35.85  E-value: 3.64e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 446800041  64 SKLRAEHQKKIAEQKEEVAERQRDLAEAK--AKGDADKIDKRERKLAEAQDELKKLEAR 120
Cdd:PRK05729 810 EAELARLEKELAKLEKEIERVEKKLSNEGfvAKAPEEVVEKEREKLAEYEEKLAKLKER 868
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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