|
Name |
Accession |
Description |
Interval |
E-value |
| glpA |
PRK11101 |
anaerobic glycerol-3-phosphate dehydrogenase subunit A; |
25-536 |
0e+00 |
|
anaerobic glycerol-3-phosphate dehydrogenase subunit A;
Pssm-ID: 236847 [Multi-domain] Cd Length: 546 Bit Score: 1136.28 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 25 RDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQ 104
Cdd:PRK11101 23 RDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTDGLFITLPEDDLAFQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 105 ATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATV 184
Cdd:PRK11101 103 ATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTV 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 185 CGVRVRNHLTGEIQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTIS 264
Cdd:PRK11101 183 CGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINNHVINRCRKPADADILVPGDTIS 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 265 LIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGL 344
Cdd:PRK11101 263 LIGTTSTRIDYDQIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGL 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 345 DGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTAELALPGSQEPAEATLRKVISLPAPLRGSAVYRHGDRTPAWLS 424
Cdd:PRK11101 343 DGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADTPLPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRAPAWLS 422
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 425 EGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNE 504
Cdd:PRK11101 423 EGRLDRSLVCECEAVTAGEVRYAVENLNVNNLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTPAQSIEQLSTFLNE 502
|
490 500 510
....*....|....*....|....*....|..
gi 446779988 505 RWKGVQPIAWGDALRESEFTRWVYQGLCGLEK 536
Cdd:PRK11101 503 RWKGVQPIAWGDALRESEFTRWVYQGLCGLEP 534
|
|
| glycerol3P_GlpA |
TIGR03377 |
glycerol-3-phosphate dehydrogenase, anaerobic, A subunit; Members of this protein family are ... |
25-540 |
0e+00 |
|
glycerol-3-phosphate dehydrogenase, anaerobic, A subunit; Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. [Energy metabolism, Anaerobic]
Pssm-ID: 274552 [Multi-domain] Cd Length: 516 Bit Score: 954.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 25 RDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQ 104
Cdd:TIGR03377 2 RDLALRGLRCILLEQGDLAHGTTGRNHGLLHSGARYAVTDQESARECIEENRILKRIARHCVEDTGGLFITLPEDDLEFQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 105 ATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATV 184
Cdd:TIGR03377 82 KQFLAACREAGIPAEEIDPAEALRLEPNLNPDLIGAVKVPDGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 185 CGVRVRNHLTGEIQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTIS 264
Cdd:TIGR03377 162 TGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLDIRMFPAKGALLIMNHRINNTVINRCRKPSDADILVPGDTIS 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 265 LIGTTSLRIDynEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGL 344
Cdd:TIGR03377 242 IIGTTSERID--DPDDLPVTQEEVDVLLREGAKLAPMLAQTRILRAFAGVRPLVAVDDDPSGRNISRGIVLLDHAERDGL 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 345 DGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTAELALPGSQEPAEA-TLRKVISLPAPLRGSAVYRHGDRTPAWL 423
Cdd:TIGR03377 320 PGFITITGGKLTTYRLMAEWATDVVCKKLGNDRPCRTADEPLPGSEDPTAVkTLKKLISLPSPIAGSAVYRHGERAPQVL 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 424 SEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLN 503
Cdd:TIGR03377 400 KDNRLDNQVICECEMVTAGEVEYAIRELDVNNLVDLRRRTRLGMGTCQGEFCAYRAAGLLSREGLIDPEQSTELLREFLE 479
|
490 500 510
....*....|....*....|....*....|....*..
gi 446779988 504 ERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKD 540
Cdd:TIGR03377 480 ERWKGIRPILWGDALREAELTYWIYQGLFGLEHLPAD 516
|
|
| GlpA |
COG0578 |
Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Glycerol-3-phosphate ... |
25-485 |
6.15e-83 |
|
Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Glycerol-3-phosphate dehydrogenase is part of the Pathway/BioSystem: Isoprenoid biosynthesis
Pssm-ID: 440343 [Multi-domain] Cd Length: 501 Bit Score: 267.00 E-value: 6.15e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 25 RDCALRGLRVILVERHDIATGATGRNHGLLHSGARY------AVTdAESARECisenQILKRIARHCVEPtngLFITLP- 97
Cdd:COG0578 1 RDAAGRGLSVALVEKGDFASGTSSRSSKLIHGGLRYleqgefRLV-REALRER----EVLLRNAPHLVRP---LPFLLPl 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 98 EDDLSFQATFIRAceeaGISA-------------EAIDPQQARIIEPAVNP-ALIGAVKVPDGTVDPFRLTAANMLDAKE 163
Cdd:COG0578 73 YKGGERPAWLIRA----GLFLydllagrkglprhRRLSRAEALALAPLLRPdGLRGGFEYYDAQVDDARLVLELARTAAE 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 164 HGAVILTAHEVTGLIREGATVCGVRVRNHLTGEIQALHAPVVVNAAGIWGQHIAEYADL--RIRMFPAKGSLLIMDHR-- 239
Cdd:COG0578 149 RGAVVLNYTRVTGLLRDGGRVWGVTVRDRLTGEEFTVRARVVVNATGPWVDELRALDGPkaPRRVRPSKGSHLVVPRLfl 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 240 -INQHVInrCRKPSDADIL--VPGDTISLIGTTslRIDYNEIDDN-RVTAEEVDILLRE-----GEKLAPvmakTRILRA 310
Cdd:COG0578 229 pLDDALY--IFQNTDGRVVfaIPWEGRTLIGTT--DTDYDGDPDEpAATEEEIDYLLEAanryfARPLTR----DDVVST 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 311 YSGVRPLVASD-DDPSgrNVSRgivllDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTR-PCTTAELALPG 388
Cdd:COG0578 301 YAGVRPLLDDGgKDTS--ALSR-----DHVIEVGPAGLLSIAGGKLTTYRKMAEDAVDAAARLLGLPRrPCWTADLPLPG 373
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 389 SQEPAEA---TLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSL---VCECEAVTAGEVQYAVENLNVNSLLD-LRR 461
Cdd:COG0578 374 GDAGFDAfvaALAAAPGLPEALARRLLRRYGTRAEEVLALAAEDPDLgepLGPGLPYLEAEVVYAVRHEMARTLEDvLLR 453
|
490 500
....*....|....*....|....*
gi 446779988 462 RTRVGMGTCQGELCAC-RAAGLLQR 485
Cdd:COG0578 454 RTRLGLLDADAAAAAApAVAELMAA 478
|
|
| DAO |
pfam01266 |
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ... |
25-359 |
1.66e-45 |
|
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Pssm-ID: 426168 [Multi-domain] Cd Length: 339 Bit Score: 162.95 E-value: 1.66e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 25 RDCALRGLRVILVERH-DIATGATGRNHGLLHSGARYAVTDAES--ARECISE-NQILKRIARHCVEPTNGLFITLPEDD 100
Cdd:pfam01266 16 YELARRGLSVTLLERGdDPGSGASGRNAGLIHPGLRYLEPSELArlALEALDLwEELEEELGIDCGFRRCGVLVLARDEE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 101 LSFQATFIRACEEAGISAEAIDPQQARIIEPAVnPALIGAVKVPD-GTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIR 179
Cdd:pfam01266 96 EEALEKLLAALRRLGVPAELLDAEELRELEPLL-PGLRGGLFYPDgGHVDPARLLRALARAAEALGVRIIEGTEVTGIEE 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 180 EGAtvcGVRVRnhLTGEIQAlhapvVVNAAGIWGQHIAEyADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILV- 258
Cdd:pfam01266 175 EGG---VWGVV--TTGEADA-----VVNAAGAWADLLAL-PGLRLPVRPVRGQVLVLEPLPEALLILPVPITVDPGRGVy 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 259 ---PGDTISLIGTTSlriDYNEIDDNRVTAEEVDILLREGEKLAPVMAktRILRAYSGVRPLvaSDDDPS-GRNVSRGIV 334
Cdd:pfam01266 244 lrpRADGRLLLGGTD---EEDGFDDPTPDPEEIEELLEAARRLFPALA--DIERAWAGLRPL--PDGLPIiGRPGSPGLY 316
|
330 340
....*....|....*....|....*.
gi 446779988 335 lldHAERDGLDGFITITG-GKLMTYR 359
Cdd:pfam01266 317 ---LATGHGGHGLTLAPGiGKLLAEL 339
|
|
| GlpA-like_Fer2_BFD-like |
cd19946 |
bacterioferritin-associated ferredoxin (BFD)-like [2Fe-2S]-binding domain of anaerobic ... |
432-485 |
4.47e-21 |
|
bacterioferritin-associated ferredoxin (BFD)-like [2Fe-2S]-binding domain of anaerobic glycerol 3-phosphate dehydrogenase subunit A, hydrogen cyanide synthase subunit B, and similar proteins; This subgroup includes the BFD-like [2Fe-2S]-binding domains of subunits of various component dehydrogenase/oxidases, including anaerobic glycerol 3-phosphate dehydrogenase subunit A of GlpABC, hydrogen cyanide synthase subunit HcnB of HcnABC, octopine oxidase subunit A of OoxAB, and nopaline oxidase subunit A of NoxAB. GlpABC catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone, and participates in the glycerol degradation by glycerol kinase pathway in step 1 of the sub-pathway that synthesizes glycerone phosphate from sn-glycerol 3-phosphate (anaerobic route). HcnABC oxidizes glycine producing hydrogen cyanide and CO2. In Agrobacterium spp, the first enzymic step in the catabolic utilization of octopine and nopaline is the oxidative cleavage into L-arginine and pyruvate or 2-ketoglutarate, respectively; nopaline oxidase (NoxAB) accepts nopaline and octopine while octopine oxidase (OoaB) has high activity with octopine but barely detectable activity with nopaline, both subunits possibly contributing to the substrate specificity. The BFD-like [2Fe-2S]-binding domain is found in a variety of other proteins including bacterioferritin-associated ferredoxin (BFD), the large subunit of NADH-dependent nitrite reductase, and Cu+ chaperone CopZ. It comprises a helix-turn-helix fold, and binds an [2Fe-2S] cluster via 4 highly-conserved Cys residues, found in loops between the alpha-helices. For the class of proteins having a BFD-like [2Fe-2S]-binding domain, the Cys residues are organized in a unique C-X2-C-X31-35-C-X2-9-C-arrangement. [2Fe-2S] clusters are sulfide-linked diiron centers, a primary role for which is electron transport.
Pssm-ID: 381079 [Multi-domain] Cd Length: 55 Bit Score: 86.44 E-value: 4.47e-21
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 446779988 432 LVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQR 485
Cdd:cd19946 2 IVCRCEEVTEGEIRDAIRRGAARDLDGLKRRTRAGMGRCQGRFCAPRVAELLAR 55
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| glpA |
PRK11101 |
anaerobic glycerol-3-phosphate dehydrogenase subunit A; |
25-536 |
0e+00 |
|
anaerobic glycerol-3-phosphate dehydrogenase subunit A;
Pssm-ID: 236847 [Multi-domain] Cd Length: 546 Bit Score: 1136.28 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 25 RDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQ 104
Cdd:PRK11101 23 RDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTDGLFITLPEDDLAFQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 105 ATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATV 184
Cdd:PRK11101 103 ATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTV 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 185 CGVRVRNHLTGEIQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTIS 264
Cdd:PRK11101 183 CGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINNHVINRCRKPADADILVPGDTIS 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 265 LIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGL 344
Cdd:PRK11101 263 LIGTTSTRIDYDQIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGL 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 345 DGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTAELALPGSQEPAEATLRKVISLPAPLRGSAVYRHGDRTPAWLS 424
Cdd:PRK11101 343 DGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADTPLPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRAPAWLS 422
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 425 EGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNE 504
Cdd:PRK11101 423 EGRLDRSLVCECEAVTAGEVRYAVENLNVNNLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTPAQSIEQLSTFLNE 502
|
490 500 510
....*....|....*....|....*....|..
gi 446779988 505 RWKGVQPIAWGDALRESEFTRWVYQGLCGLEK 536
Cdd:PRK11101 503 RWKGVQPIAWGDALRESEFTRWVYQGLCGLEP 534
|
|
| glycerol3P_GlpA |
TIGR03377 |
glycerol-3-phosphate dehydrogenase, anaerobic, A subunit; Members of this protein family are ... |
25-540 |
0e+00 |
|
glycerol-3-phosphate dehydrogenase, anaerobic, A subunit; Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. [Energy metabolism, Anaerobic]
Pssm-ID: 274552 [Multi-domain] Cd Length: 516 Bit Score: 954.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 25 RDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQ 104
Cdd:TIGR03377 2 RDLALRGLRCILLEQGDLAHGTTGRNHGLLHSGARYAVTDQESARECIEENRILKRIARHCVEDTGGLFITLPEDDLEFQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 105 ATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATV 184
Cdd:TIGR03377 82 KQFLAACREAGIPAEEIDPAEALRLEPNLNPDLIGAVKVPDGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 185 CGVRVRNHLTGEIQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTIS 264
Cdd:TIGR03377 162 TGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLDIRMFPAKGALLIMNHRINNTVINRCRKPSDADILVPGDTIS 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 265 LIGTTSLRIDynEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGL 344
Cdd:TIGR03377 242 IIGTTSERID--DPDDLPVTQEEVDVLLREGAKLAPMLAQTRILRAFAGVRPLVAVDDDPSGRNISRGIVLLDHAERDGL 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 345 DGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTAELALPGSQEPAEA-TLRKVISLPAPLRGSAVYRHGDRTPAWL 423
Cdd:TIGR03377 320 PGFITITGGKLTTYRLMAEWATDVVCKKLGNDRPCRTADEPLPGSEDPTAVkTLKKLISLPSPIAGSAVYRHGERAPQVL 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 424 SEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLN 503
Cdd:TIGR03377 400 KDNRLDNQVICECEMVTAGEVEYAIRELDVNNLVDLRRRTRLGMGTCQGEFCAYRAAGLLSREGLIDPEQSTELLREFLE 479
|
490 500 510
....*....|....*....|....*....|....*..
gi 446779988 504 ERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKD 540
Cdd:TIGR03377 480 ERWKGIRPILWGDALREAELTYWIYQGLFGLEHLPAD 516
|
|
| GlpA |
COG0578 |
Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Glycerol-3-phosphate ... |
25-485 |
6.15e-83 |
|
Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Glycerol-3-phosphate dehydrogenase is part of the Pathway/BioSystem: Isoprenoid biosynthesis
Pssm-ID: 440343 [Multi-domain] Cd Length: 501 Bit Score: 267.00 E-value: 6.15e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 25 RDCALRGLRVILVERHDIATGATGRNHGLLHSGARY------AVTdAESARECisenQILKRIARHCVEPtngLFITLP- 97
Cdd:COG0578 1 RDAAGRGLSVALVEKGDFASGTSSRSSKLIHGGLRYleqgefRLV-REALRER----EVLLRNAPHLVRP---LPFLLPl 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 98 EDDLSFQATFIRAceeaGISA-------------EAIDPQQARIIEPAVNP-ALIGAVKVPDGTVDPFRLTAANMLDAKE 163
Cdd:COG0578 73 YKGGERPAWLIRA----GLFLydllagrkglprhRRLSRAEALALAPLLRPdGLRGGFEYYDAQVDDARLVLELARTAAE 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 164 HGAVILTAHEVTGLIREGATVCGVRVRNHLTGEIQALHAPVVVNAAGIWGQHIAEYADL--RIRMFPAKGSLLIMDHR-- 239
Cdd:COG0578 149 RGAVVLNYTRVTGLLRDGGRVWGVTVRDRLTGEEFTVRARVVVNATGPWVDELRALDGPkaPRRVRPSKGSHLVVPRLfl 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 240 -INQHVInrCRKPSDADIL--VPGDTISLIGTTslRIDYNEIDDN-RVTAEEVDILLRE-----GEKLAPvmakTRILRA 310
Cdd:COG0578 229 pLDDALY--IFQNTDGRVVfaIPWEGRTLIGTT--DTDYDGDPDEpAATEEEIDYLLEAanryfARPLTR----DDVVST 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 311 YSGVRPLVASD-DDPSgrNVSRgivllDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTR-PCTTAELALPG 388
Cdd:COG0578 301 YAGVRPLLDDGgKDTS--ALSR-----DHVIEVGPAGLLSIAGGKLTTYRKMAEDAVDAAARLLGLPRrPCWTADLPLPG 373
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 389 SQEPAEA---TLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSL---VCECEAVTAGEVQYAVENLNVNSLLD-LRR 461
Cdd:COG0578 374 GDAGFDAfvaALAAAPGLPEALARRLLRRYGTRAEEVLALAAEDPDLgepLGPGLPYLEAEVVYAVRHEMARTLEDvLLR 453
|
490 500
....*....|....*....|....*
gi 446779988 462 RTRVGMGTCQGELCAC-RAAGLLQR 485
Cdd:COG0578 454 RTRLGLLDADAAAAAApAVAELMAA 478
|
|
| DAO |
pfam01266 |
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ... |
25-359 |
1.66e-45 |
|
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Pssm-ID: 426168 [Multi-domain] Cd Length: 339 Bit Score: 162.95 E-value: 1.66e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 25 RDCALRGLRVILVERH-DIATGATGRNHGLLHSGARYAVTDAES--ARECISE-NQILKRIARHCVEPTNGLFITLPEDD 100
Cdd:pfam01266 16 YELARRGLSVTLLERGdDPGSGASGRNAGLIHPGLRYLEPSELArlALEALDLwEELEEELGIDCGFRRCGVLVLARDEE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 101 LSFQATFIRACEEAGISAEAIDPQQARIIEPAVnPALIGAVKVPD-GTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIR 179
Cdd:pfam01266 96 EEALEKLLAALRRLGVPAELLDAEELRELEPLL-PGLRGGLFYPDgGHVDPARLLRALARAAEALGVRIIEGTEVTGIEE 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 180 EGAtvcGVRVRnhLTGEIQAlhapvVVNAAGIWGQHIAEyADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILV- 258
Cdd:pfam01266 175 EGG---VWGVV--TTGEADA-----VVNAAGAWADLLAL-PGLRLPVRPVRGQVLVLEPLPEALLILPVPITVDPGRGVy 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 259 ---PGDTISLIGTTSlriDYNEIDDNRVTAEEVDILLREGEKLAPVMAktRILRAYSGVRPLvaSDDDPS-GRNVSRGIV 334
Cdd:pfam01266 244 lrpRADGRLLLGGTD---EEDGFDDPTPDPEEIEELLEAARRLFPALA--DIERAWAGLRPL--PDGLPIiGRPGSPGLY 316
|
330 340
....*....|....*....|....*.
gi 446779988 335 lldHAERDGLDGFITITG-GKLMTYR 359
Cdd:pfam01266 317 ---LATGHGGHGLTLAPGiGKLLAEL 339
|
|
| DadA |
COG0665 |
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism]; |
27-316 |
1.61e-35 |
|
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
Pssm-ID: 440429 [Multi-domain] Cd Length: 364 Bit Score: 136.57 E-value: 1.61e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 27 CAL----RGLRVILVERHDIATGATGRNHGLLHSGARYAVTDA-----ESARECISEnqILKRIARHC-VEPTNGLFITL 96
Cdd:COG0665 17 TAYhlarRGLDVTVLERGRPGSGASGRNAGQLRPGLAALADRAlvrlaREALDLWRE--LAAELGIDCdFRRTGVLYLAR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 97 PEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVN-PALIGAVKVP-DGTVDPFRLTAANMLDAKEHGAVILTAHEV 174
Cdd:COG0665 95 TEAELAALRAEAEALRALGLPVELLDAAELREREPGLGsPDYAGGLYDPdDGHVDPAKLVRALARAARAAGVRIREGTPV 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 175 TGLIREGATVCGVRVRNhltGEIqalHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLI---MDHRINQHVInrcrkp 251
Cdd:COG0665 175 TGLEREGGRVTGVRTER---GTV---RADAVVLAAGAWSARLLPMLGLRLPLRPVRGYVLVtepLPDLPLRPVL------ 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446779988 252 SDADI---LVPGDTIsLIGTTSlriDYNEIDDnRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRP 316
Cdd:COG0665 243 DDTGVylrPTADGRL-LVGGTA---EPAGFDR-APTPERLEALLRRLRRLFPALADAEIVRAWAGLRP 305
|
|
| PLN02464 |
PLN02464 |
glycerol-3-phosphate dehydrogenase |
26-465 |
2.84e-35 |
|
glycerol-3-phosphate dehydrogenase
Pssm-ID: 215257 [Multi-domain] Cd Length: 627 Bit Score: 139.92 E-value: 2.84e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 26 DCALRGLRVILVERHDIATGATGRNHGLLHSGARY---AVTDAESAR-----ECISENQILKRIARH------CVEPTNG 91
Cdd:PLN02464 89 DAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYlekAVFQLDYGQlklvfHALEERKQLIENAPHlchalpIMTPCYD 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 92 LFiTLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNP-----ALIGAVKVPDGTVDPFRLTAANMLDAKEHGA 166
Cdd:PLN02464 169 WF-EVPYYWAGLKAYDLVAGPRLLHLSRYYSAKESLELFPTLAKkgkdgSLKGTVVYYDGQMNDSRLNVALACTAALAGA 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 167 VILTAHEVTGLIREGAT--VCGVRVRNHLTGEIQALHAPVVVNAAGIWGQHIAEYADLRIR--MFPAKGSLLIM-DHRIn 241
Cdd:PLN02464 248 AVLNYAEVVSLIKDESTgrIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADGKAKpmICPSSGVHIVLpDYYS- 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 242 qhvinrcrkPSDADILVP--------------GDTIslIGTTSLRIDYNEIDdnRVTAEEVDILLREGEKLAPVMAK-TR 306
Cdd:PLN02464 327 ---------PEGMGLIVPktkdgrvvfmlpwlGRTV--AGTTDSKTPITMLP--EPHEDEIQFILDAISDYLNVKVRrSD 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 307 ILRAYSGVRPLVAsddDPSGR---NVSRgivllDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCR--KLGNTRPCTT 381
Cdd:PLN02464 394 VLSAWSGIRPLAV---DPSAKsteSISR-----DHVVCEEPDGLVTITGGKWTTYRSMAEDAVDAAIKsgKLSPTNGCVT 465
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 382 AELALPGSQ--EPAEATL-------RKVISLPAPLRG---SAVYRH-----GDRTPAWLS---EGRLHRSLVcECEAVTA 441
Cdd:PLN02464 466 TDLPLVGAEgyEPSLFTQlaqqyvrMKRTYGGKVVPGamdTAAAKHlahayGGRADRVAEiaqNEGLGKRLA-HGYPFLE 544
|
490 500
....*....|....*....|....*
gi 446779988 442 GEVQYAVENLNVNSLLD-LRRRTRV 465
Cdd:PLN02464 545 AEVAYCARHEYCESAVDfIARRTRL 569
|
|
| PRK13369 |
PRK13369 |
glycerol-3-phosphate dehydrogenase; Provisional |
25-467 |
1.16e-31 |
|
glycerol-3-phosphate dehydrogenase; Provisional
Pssm-ID: 237365 [Multi-domain] Cd Length: 502 Bit Score: 128.16 E-value: 1.16e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 25 RDCALRGLRVILVERHDIATGATGRNHGLLHSGARYA-------VtdaesaRECISENQILKRIARHCVEPTNglFItLP 97
Cdd:PRK13369 23 RDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLeyyefrlV------REALIEREVLLAAAPHIIWPMR--FV-LP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 98 EDDLSFQATFIRAceeaGI-------------SAEAIDPQQARIIEPaVNPALIGAVKVPDGTVDPFRLTAANMLDAKEH 164
Cdd:PRK13369 94 HSPEDRPAWLVRL----GLflydhlggrkrlpGTRTLDLRRDPEGAP-LKPEYTKGFEYSDCWVDDARLVVLNALDAAER 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 165 GAVILTAHEVTGLIREGAT-VCGVRVRNhltGEIQALHAPVVVNAAGIWgqhIAEYADLRIRMFPAKGSLLImdhRINQH 243
Cdd:PRK13369 169 GATILTRTRCVSARREGGLwRVETRDAD---GETRTVRARALVNAAGPW---VTDVIHRVAGSNSSRNVRLV---KGSHI 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 244 VINRCRKPSDADILVPGD-----------TISLIGTTSlrIDYN-EIDDNRVTAEEVDILLREG-----EKLAPvmakTR 306
Cdd:PRK13369 240 VVPKFWDGAQAYLFQNPDkrvifanpyegDFTLIGTTD--IAYEgDPEDVAADEEEIDYLLDAAnryfkEKLRR----ED 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 307 ILRAYSGVRPLVasdDDPSGR--NVSRGIVLLDHAERDGLDgFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTAEL 384
Cdd:PRK13369 314 VVHSFSGVRPLF---DDGAGNpsAVTRDYVFDLDAETGGAP-LLSVFGGKITTFRKLAEHALERLKPFFPQMGGDWTAGA 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 385 ALPGSQEPA------EATLRKVIS-LPAPLRGSAVYRHGDRTPAWLSEGRLHRSL-VCECEAVTAGEVQYAVENLNVNSL 456
Cdd:PRK13369 390 PLPGGDIANadfdtfADDLRDRYPwLPRPLAHRYARLYGTRAKDVLGGARSLEDLgRHFGGGLTEAEVRYLVAREWARTA 469
|
490
....*....|..
gi 446779988 457 LD-LRRRTRVGM 467
Cdd:PRK13369 470 EDiLWRRTKLGL 481
|
|
| glpD |
PRK12266 |
glycerol-3-phosphate dehydrogenase; Reviewed |
25-467 |
1.43e-28 |
|
glycerol-3-phosphate dehydrogenase; Reviewed
Pssm-ID: 237027 [Multi-domain] Cd Length: 508 Bit Score: 119.09 E-value: 1.43e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 25 RDCALRGLRVILVERHDIATGATGRNHGLLHSGARYA-------VtdaesaRECISENQILKRIARHCVEPTN------- 90
Cdd:PRK12266 23 RDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLehyefrlV------REALAEREVLLRMAPHIIWPMRfvlphrp 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 91 ----------GLFI--------TLPeddlsfqATfiraceeagisaeaidpqqaRIIEPAVNPAliGAVKVP-------- 144
Cdd:PRK12266 97 hlrpawmiraGLFLydhlgkrkSLP-------GS--------------------RGLDLGRDPA--GSPLKPeitrgfey 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 145 -DGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGAtVCGVRVRNHLTGEIQALHAPVVVNAAGIW-GQHIAEYADL 222
Cdd:PRK12266 148 sDCWVDDARLVVLNARDAAERGAEILTRTRVVSARRENG-LWHVTLEDTATGKRYTVRARALVNAAGPWvKQFLDDGLGL 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 223 ----RIRMfpAKGSLLIMdHRINQHvinrcrkpSDADILVPGD-----TI------SLIGTTSlrIDYN-EIDDNRVTAE 286
Cdd:PRK12266 227 pspyGIRL--VKGSHIVV-PRLFDH--------DQAYILQNPDgrivfAIpyeddfTLIGTTD--VEYKgDPAKVAISEE 293
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 287 EVDILLregeKLAPVMAKTRILRA-----YSGVRPLVasdDDPSGRN--VSRGIVLLDHAERDG--LdgfITITGGKLMT 357
Cdd:PRK12266 294 EIDYLC----KVVNRYFKKQLTPAdvvwtYSGVRPLC---DDESDSAqaITRDYTLELDDENGGapL---LSVFGGKITT 363
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 358 YRLMAEWATDAVCRKLGNTRPCTTAELALPGSQEP-------AEATLRKVISLPAPLRGSAVYRHGDRTPAWLSEGrlhR 430
Cdd:PRK12266 364 YRKLAEHALEKLAPYLPQMGPAWTAGAPLPGGDFPgdrfdalAAALRRRYPWLPEALARRLARAYGTRAERLLGGA---T 440
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 446779988 431 SLVCECEAVTAG----EVQYAVENLNVNSLLD-LRRRTRVGM 467
Cdd:PRK12266 441 SLADLGEHFGHGlyeaEVDYLVEHEWARTAEDiLWRRTKLGL 482
|
|
| LhgO |
COG0579 |
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism]; |
29-247 |
8.76e-28 |
|
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
Pssm-ID: 440344 [Multi-domain] Cd Length: 418 Bit Score: 115.63 E-value: 8.76e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 29 LRGLRVILVER-HDIATGATGRNHGLLHSGArYAVTDAESARECISENQILKRIAR-HCV--EPTNGLFITLPEDDLSFQ 104
Cdd:COG0579 26 YEDLKVLVLEKeDDVAQESSGNNSGVIHAGL-YYTPGSLKARLCVEGNELFYELCReLGIpfKRCGKLVVATGEEEVAFL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 105 ATFIRACEEAGISA-EAIDPQQARIIEPAVNPALIGAVKVPDGT-VDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGA 182
Cdd:COG0579 105 EKLYERGKANGVPGlEILDREELRELEPLLSDEGVAALYSPSTGiVDPGALTRALAENAEANGVELLLNTEVTGIEREGD 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446779988 183 tvcGVRVRNHlTGEIqalHAPVVVNAAGIWGQHIAEYA--DLRIRMFPAKGSLLIMDHRinQHVINR 247
Cdd:COG0579 185 ---GWEVTTN-GGTI---RARFVINAAGLYADRLAQMAgiGKDFGIFPVKGEYLVLDKP--AELVNA 242
|
|
| GlpA-like_Fer2_BFD-like |
cd19946 |
bacterioferritin-associated ferredoxin (BFD)-like [2Fe-2S]-binding domain of anaerobic ... |
432-485 |
4.47e-21 |
|
bacterioferritin-associated ferredoxin (BFD)-like [2Fe-2S]-binding domain of anaerobic glycerol 3-phosphate dehydrogenase subunit A, hydrogen cyanide synthase subunit B, and similar proteins; This subgroup includes the BFD-like [2Fe-2S]-binding domains of subunits of various component dehydrogenase/oxidases, including anaerobic glycerol 3-phosphate dehydrogenase subunit A of GlpABC, hydrogen cyanide synthase subunit HcnB of HcnABC, octopine oxidase subunit A of OoxAB, and nopaline oxidase subunit A of NoxAB. GlpABC catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone, and participates in the glycerol degradation by glycerol kinase pathway in step 1 of the sub-pathway that synthesizes glycerone phosphate from sn-glycerol 3-phosphate (anaerobic route). HcnABC oxidizes glycine producing hydrogen cyanide and CO2. In Agrobacterium spp, the first enzymic step in the catabolic utilization of octopine and nopaline is the oxidative cleavage into L-arginine and pyruvate or 2-ketoglutarate, respectively; nopaline oxidase (NoxAB) accepts nopaline and octopine while octopine oxidase (OoaB) has high activity with octopine but barely detectable activity with nopaline, both subunits possibly contributing to the substrate specificity. The BFD-like [2Fe-2S]-binding domain is found in a variety of other proteins including bacterioferritin-associated ferredoxin (BFD), the large subunit of NADH-dependent nitrite reductase, and Cu+ chaperone CopZ. It comprises a helix-turn-helix fold, and binds an [2Fe-2S] cluster via 4 highly-conserved Cys residues, found in loops between the alpha-helices. For the class of proteins having a BFD-like [2Fe-2S]-binding domain, the Cys residues are organized in a unique C-X2-C-X31-35-C-X2-9-C-arrangement. [2Fe-2S] clusters are sulfide-linked diiron centers, a primary role for which is electron transport.
Pssm-ID: 381079 [Multi-domain] Cd Length: 55 Bit Score: 86.44 E-value: 4.47e-21
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 446779988 432 LVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQR 485
Cdd:cd19946 2 IVCRCEEVTEGEIRDAIRRGAARDLDGLKRRTRAGMGRCQGRFCAPRVAELLAR 55
|
|
| Fer2_BFD-like |
cd19942 |
[2Fe-2S]-binding domain of bacterioferritin-associated ferredoxin (BFD) and related proteins; ... |
431-482 |
6.62e-09 |
|
[2Fe-2S]-binding domain of bacterioferritin-associated ferredoxin (BFD) and related proteins; The BFD-like [2Fe-2S]-binding domain comprises a helix-turn-helix fold, and binds an [2Fe-2S] cluster via 4 highly-conserved Cys residues, found in loops between the alpha-helices. The Cys residues are organized in a unique C-X2-C-X31-35-C-X2-9-C-arrangement. [2Fe-2S] clusters are sulfide-linked diiron centers, a primary role for which is electron transport. BFD-like [2Fe-2S]-binding domains are found in proteins such as bacterioferritin-associated ferredoxin (BFD), the large subunit of NADH-dependent nitrite reductase, Cu+ chaperone CopZ, anaerobic glycerol 3-phosphate dehydrogenase subunit A, hydrogen cyanide synthase subunit B, nitrogen fixation protein NifU, prokaryotic assimilatory nitrate reductase catalytic subunit NasA, and archaeal proline dehydrogenase PDH1. This superfamily also includes uncharacterized proteins having an N-terminal BFD-like [2Fe-2S]-binding domain and a C-terminal domain belonging to the Ni,Fe-hydrogenase I small subunit family.
Pssm-ID: 381075 [Multi-domain] Cd Length: 49 Bit Score: 51.67 E-value: 6.62e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 446779988 431 SLVCECEAVTAGEVQYAVENLNvNSLLDLRRRTRVGMGTCQgeLCACRAAGL 482
Cdd:cd19942 1 ALVCECFAVTEKELREAIRKGG-LKTVEELLTGTGAGGGCG--VCHPHVAQL 49
|
|
| PRK11728 |
PRK11728 |
L-2-hydroxyglutarate oxidase; |
31-240 |
2.85e-08 |
|
L-2-hydroxyglutarate oxidase;
Pssm-ID: 183292 [Multi-domain] Cd Length: 393 Bit Score: 55.98 E-value: 2.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 31 GLRVILVER-HDIATGATGRNHGLLHSG---------ARYAVTDAESARECISENQIlkriaRHcvEPTNGLFITLPEDD 100
Cdd:PRK11728 27 GARIAVLEKeSGPARHQTGHNSGVIHAGvyytpgslkARFCRRGNEATKAFCDQHGI-----PY--EECGKLLVATSELE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 101 LSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPalIGAVKVPD-GTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIR 179
Cdd:PRK11728 100 LERMEALYERARANGIEVERLDAEELREREPNIRG--LGAIFVPStGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446779988 180 EGAtvcGVRVRNHlTGEIqalHAPVVVNAAGIwgqhiaeYADLRIRMFPAKGsllimDHRI 240
Cdd:PRK11728 178 HAN---GVVVRTT-QGEY---EARTLINCAGL-------MSDRLAKMAGLEP-----DFRI 219
|
|
| SdhA |
COG1053 |
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ... |
161-241 |
2.27e-05 |
|
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle
Pssm-ID: 440673 [Multi-domain] Cd Length: 443 Bit Score: 46.75 E-value: 2.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 161 AKEHGAVILTAHEVTGLIREGATVCGVRVRNHlTGEIQALHAPVVVNAAGIWGqHIAEyadLRIRMFPAKGSLLIMDHRI 240
Cdd:COG1053 144 ALRLGVEIFTETEVLDLIVDDGRVVGVVARDR-TGEIVRIRAKAVVLATGGFG-RNYE---MRAEYLPEAEGALSTNAPG 218
|
.
gi 446779988 241 N 241
Cdd:COG1053 219 N 219
|
|
| Fer2_BFD |
pfam04324 |
BFD-like [2Fe-2S] binding domain; The two Fe ions are each coordinated by two conserved ... |
432-485 |
3.27e-05 |
|
BFD-like [2Fe-2S] binding domain; The two Fe ions are each coordinated by two conserved cysteine residues. This domain occurs alone in small proteins such as Bacterioferritin-associated ferredoxin (BFD). The function of BFD is not known, but it may may be a general redox and/or regulatory component involved in the iron storage or mobilization functions of bacterioferritin in bacteria. This domain is also found in nitrate reductase proteins in association with Nitrite and sulphite reductase 4Fe-4S domain (pfam01077), Nitrite/Sulfite reductase ferredoxin-like half domain (pfam03460) and Pyridine nucleotide-disulphide oxidoreductase (pfam00070). It is also found in NifU nitrogen fixation proteins, in association with NifU-like N terminal domain (pfam01592) and NifU-like domain (pfam01106).
Pssm-ID: 461261 [Multi-domain] Cd Length: 50 Bit Score: 41.36 E-value: 3.27e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 446779988 432 LVCECEAVTAGEVQYAVENlNVNSLLDLRRRTRVGMGtCQGelCACRAAGLLQR 485
Cdd:pfam04324 1 IVCRCFGVTDGEIRDAIRE-GLTTVEEVKRRTKAGTG-CGS--CRPAIEEILAE 50
|
|
| COG1233 |
COG1233 |
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ... |
161-212 |
2.40e-04 |
|
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 440846 [Multi-domain] Cd Length: 491 Bit Score: 43.68 E-value: 2.40e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 446779988 161 AKEHGAVILTAHEVTGLIREGATVCGVRVRNhltGEIqaLHAPVVVNAAGIW 212
Cdd:COG1233 232 AEELGGEIRTGAEVERILVEGGRATGVRLAD---GEE--IRADAVVSNADPA 278
|
|
| PRK00711 |
PRK00711 |
D-amino acid dehydrogenase; |
108-235 |
8.22e-04 |
|
D-amino acid dehydrogenase;
Pssm-ID: 234819 [Multi-domain] Cd Length: 416 Bit Score: 42.09 E-value: 8.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779988 108 IRACEEAGISAEAIDPQQARIIEPA---VNPALIGAVKVP-DGTVDPFRLTA--ANMldAKEHGAVILTAHEVTGLIREG 181
Cdd:PRK00711 154 IAVLEEAGVPYELLDRDELAAVEPAlagVRHKLVGGLRLPnDETGDCQLFTQrlAAM--AEQLGVKFRFNTPVDGLLVEG 231
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 446779988 182 ATVCGVRVrnhlTGEIqaLHAPVVVNAAGIWGQHIAEYADLRIRMFPAKG-SLLI 235
Cdd:PRK00711 232 GRITGVQT----GGGV--ITADAYVVALGSYSTALLKPLGVDIPVYPLKGySLTV 280
|
|
| PRK06185 |
PRK06185 |
FAD-dependent oxidoreductase; |
168-210 |
2.42e-03 |
|
FAD-dependent oxidoreductase;
Pssm-ID: 235729 [Multi-domain] Cd Length: 407 Bit Score: 40.23 E-value: 2.42e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 446779988 168 ILTAHEVTGLIREGATVCGVRVRNhlTGEIQALHAPVVVNAAG 210
Cdd:PRK06185 126 LRMGAEVTGLIEEGGRVTGVRART--PDGPGEIRADLVVGADG 166
|
|
| |
