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Conserved domains on  [gi|446772692|ref|WP_000849948|]
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phage major capsid protein [Staphylococcus aureus]

Protein Classification

phage major capsid protein( domain architecture ID 11492754)

phage major capsid protein self-assembles to form a capsid for genome packaging

Gene Ontology:  GO:0019068|GO:0005198
SCOP:  4002638

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
major_cap_HK97 TIGR01554
phage major capsid protein, HK97 family; This model family represents the major capsid protein ...
11-400 8.07e-47

phage major capsid protein, HK97 family; This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions]


:

Pssm-ID: 273690 [Multi-domain]  Cd Length: 386  Bit Score: 164.83  E-value: 8.07e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692   11 ISDIKRQIDLKVKYATRALNNDELEKAEKLEQEITDLRSQIQEKQEELDKLKEKDGTSEKNPQsvevNEARTYRNQANIN 90
Cdd:TIGR01554   1 LKELREALAELAKELRKLTEDEKLAEAEEKKEEFDALKAEIDKLEAEIDRLEAALDELAAKAA----APGLGGGGEEEGR 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692   91 DLGISIQNTKVTSQEVRDFTEYLETRNDIQGGSlkTDSGFVVIPEEIVTDILKLKEVEFNLDKYVTVKRVTNGSGKYPVV 170
Cdd:TIGR01554  77 EADEEKAAFRFRNYLRGGDAAGAEERKALSTGT--DSDGGYLVPEEFSTEIIELLKEYSPLRQLATVIPVSSGSITIPVD 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692  171 RQSEVAALekVEELEENPELAVKpFFQLAYDINTHRGYFRISREAIEDAKVNVLQELKLWMARTIAATRNKAIIDVI-TK 249
Cdd:TIGR01554 155 AGTPEAGW--VGEGAARPESDPT-FGQVELPVKKLAAIIPISNELLDDSAVDLEAYLADELAEAFARAENAAILNGDgTG 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692  250 GSTGSTSSgfEKEGKKLDVKKAKSL--DDIKDAINLnVKPNYEHN-VAIVSQTMFAKLDKMKDKLGNYLIQPDVKEKTQQ 326
Cdd:TIGR01554 232 KPKGILTY--AAVGKVVTTGAAGTItaDDLIDLIYS-LDPAYRANaVWVMNRSTLAALRKLKDGNGRYLWQPGLTAGQPA 308
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446772692  327 RLLGAKIEILPDEVLGQKGNNTLIIGNLKDAIVLFDRSQYQASWTDYMHF---GECLMIAVRQDCRILDYKSAIVIE 400
Cdd:TIGR01554 309 TLLGRPVVETEDMPDVAAGAKPILFGDFSRGYLIVDRKGMTIRVLRDPYTekdQVGFRATKRVDGKVVDPEAIKLLK 385
 
Name Accession Description Interval E-value
major_cap_HK97 TIGR01554
phage major capsid protein, HK97 family; This model family represents the major capsid protein ...
11-400 8.07e-47

phage major capsid protein, HK97 family; This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273690 [Multi-domain]  Cd Length: 386  Bit Score: 164.83  E-value: 8.07e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692   11 ISDIKRQIDLKVKYATRALNNDELEKAEKLEQEITDLRSQIQEKQEELDKLKEKDGTSEKNPQsvevNEARTYRNQANIN 90
Cdd:TIGR01554   1 LKELREALAELAKELRKLTEDEKLAEAEEKKEEFDALKAEIDKLEAEIDRLEAALDELAAKAA----APGLGGGGEEEGR 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692   91 DLGISIQNTKVTSQEVRDFTEYLETRNDIQGGSlkTDSGFVVIPEEIVTDILKLKEVEFNLDKYVTVKRVTNGSGKYPVV 170
Cdd:TIGR01554  77 EADEEKAAFRFRNYLRGGDAAGAEERKALSTGT--DSDGGYLVPEEFSTEIIELLKEYSPLRQLATVIPVSSGSITIPVD 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692  171 RQSEVAALekVEELEENPELAVKpFFQLAYDINTHRGYFRISREAIEDAKVNVLQELKLWMARTIAATRNKAIIDVI-TK 249
Cdd:TIGR01554 155 AGTPEAGW--VGEGAARPESDPT-FGQVELPVKKLAAIIPISNELLDDSAVDLEAYLADELAEAFARAENAAILNGDgTG 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692  250 GSTGSTSSgfEKEGKKLDVKKAKSL--DDIKDAINLnVKPNYEHN-VAIVSQTMFAKLDKMKDKLGNYLIQPDVKEKTQQ 326
Cdd:TIGR01554 232 KPKGILTY--AAVGKVVTTGAAGTItaDDLIDLIYS-LDPAYRANaVWVMNRSTLAALRKLKDGNGRYLWQPGLTAGQPA 308
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446772692  327 RLLGAKIEILPDEVLGQKGNNTLIIGNLKDAIVLFDRSQYQASWTDYMHF---GECLMIAVRQDCRILDYKSAIVIE 400
Cdd:TIGR01554 309 TLLGRPVVETEDMPDVAAGAKPILFGDFSRGYLIVDRKGMTIRVLRDPYTekdQVGFRATKRVDGKVVDPEAIKLLK 385
Phage_capsid pfam05065
Phage capsid family; Family of bacteriophage hypothetical proteins and capsid proteins.
135-400 4.28e-43

Phage capsid family; Family of bacteriophage hypothetical proteins and capsid proteins.


Pssm-ID: 428287  Cd Length: 272  Bit Score: 151.76  E-value: 4.28e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692  135 EEIVTDILKLKEVEFNLDKYVTVKRvTNGSGKYPVVRQSEVAALEKVEELEENPELAVKPFFQLAYDINTHRGYFRISRE 214
Cdd:pfam05065   1 PELSTEIIELLREESPIRQLATVIR-TSTSGTVRIPVDTGTAEAGWVGETGAIPETDSPTFGQITLPVHKLAAWVPVSRE 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692  215 AIEDAKVNVLQELKLWMARTIAATRNKAIIDVITKGS--TGSTSSGFEKEGKKLDVKKAKSLDDIKDAINlNVKPNYEHN 292
Cdd:pfam05065  80 LLDDSAIDLEAYLAGRLAEAFARKEDEAFLNGDGDGNqpKGILAASTGAVATGKAAAVTGTADNLIDLIY-SLPAAYRAN 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692  293 VAIV-SQTMFAKLDKMKDKLGNYLIQPDVKEKTQQRLLGAKIEILPDEVL-GQKGNNTLIIGNLKdAIVLFDRSQYQASW 370
Cdd:pfam05065 159 ASFVmNRSTLAALRKLKDADGNYLWQPGLAAGQPATLLGRPVVESEDMVAaGAKPTGDILFGDFS-AYIIVDRGGLEIKR 237
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 446772692  371 TDYMHFG-----ECLMIAVRQDCRILDYKSAIVIE 400
Cdd:pfam05065 238 LRDPYSFfekdqVGFRATKRVDGAVVDPEAFKVLK 272
gp36 COG4653
Predicted phage phi-C31 gp36 major capsid-like protein [Mobilome: prophages, transposons];
109-365 1.12e-17

Predicted phage phi-C31 gp36 major capsid-like protein [Mobilome: prophages, transposons];


Pssm-ID: 443691  Cd Length: 304  Bit Score: 83.00  E-value: 1.12e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692 109 FTEYLETRNDIQGGSLK-------TDSGFVViPEEIVTDILKlKEVEFN-LDKYVTVKRVTNGSGKYPVVRQSEVAALek 180
Cdd:COG4653    3 FGAYLRRGDARLREEAKalstgtdADGGYLV-PPEFANEIIE-ALKEYSpIRQLARVITTSSGSYKIPVSTTGPTAGW-- 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692 181 VEELEENPELAVKpFFQLAYDINTHRGYFRISREAIEDAKVNVLQELKLWMARTIAATRNKAIIdvitKGsTGS------ 254
Cdd:COG4653   79 VGEGAARETSTPT-FGQVTLPAHELYALPKVSQELLDDSAFDLEAWLAEELAEAFARAEEAAFV----NG-DGTgkpkgi 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692 255 -TSSGFEKEGKKLDVKKAKSLDDIKDAINlNVKPNYEHNVAIV-SQTMFAKLDKMKDKLGNYLIQPDVKEKTQQRLLGAK 332
Cdd:COG4653  153 lTYATVAAGTVAAGAAGAITADDLIDLIY-SLKAAYRANAVWVmNDSTLAAIRKLKDGNGRYLWQPGLAAGQPATLLGYP 231
                        250       260       270
                 ....*....|....*....|....*....|....
gi 446772692 333 IEILPD-EVLGqKGNNTLIIGNLKDAIVLFDRSQ 365
Cdd:COG4653  232 VVESEDmPDIA-AGAKPIAFGDFSRGYLIVDRQG 264
PTZ00423 PTZ00423
glideosome-associated protein 45; Provisional
32-161 2.70e-03

glideosome-associated protein 45; Provisional


Pssm-ID: 240413 [Multi-domain]  Cd Length: 193  Bit Score: 38.94  E-value: 2.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692  32 DELEKAEKLEQEITDLRSQIQEK-QEELDKLKEKDGTSEKNPQSVEVNEARTYRNQAN-------INDLGISIQNTKVTS 103
Cdd:PTZ00423  19 DELAEREKLKKEVEEIPEQKPEDiVEELEDQPEEPPEQEEENEEQKPKEEIDYPIQENksfdeknLDDLERSNSDIYSES 98
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 446772692 104 QEVRDFTEYLETRNDIqggSLKTDSgfvvipEEIVTDILKLKEVEFNLDKYVTVKRVT 161
Cdd:PTZ00423  99 HKYDNASDKLETGSQL---TLSTDA------TGIVQQVTKLSEPAHEESIYNTYKSVT 147
 
Name Accession Description Interval E-value
major_cap_HK97 TIGR01554
phage major capsid protein, HK97 family; This model family represents the major capsid protein ...
11-400 8.07e-47

phage major capsid protein, HK97 family; This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273690 [Multi-domain]  Cd Length: 386  Bit Score: 164.83  E-value: 8.07e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692   11 ISDIKRQIDLKVKYATRALNNDELEKAEKLEQEITDLRSQIQEKQEELDKLKEKDGTSEKNPQsvevNEARTYRNQANIN 90
Cdd:TIGR01554   1 LKELREALAELAKELRKLTEDEKLAEAEEKKEEFDALKAEIDKLEAEIDRLEAALDELAAKAA----APGLGGGGEEEGR 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692   91 DLGISIQNTKVTSQEVRDFTEYLETRNDIQGGSlkTDSGFVVIPEEIVTDILKLKEVEFNLDKYVTVKRVTNGSGKYPVV 170
Cdd:TIGR01554  77 EADEEKAAFRFRNYLRGGDAAGAEERKALSTGT--DSDGGYLVPEEFSTEIIELLKEYSPLRQLATVIPVSSGSITIPVD 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692  171 RQSEVAALekVEELEENPELAVKpFFQLAYDINTHRGYFRISREAIEDAKVNVLQELKLWMARTIAATRNKAIIDVI-TK 249
Cdd:TIGR01554 155 AGTPEAGW--VGEGAARPESDPT-FGQVELPVKKLAAIIPISNELLDDSAVDLEAYLADELAEAFARAENAAILNGDgTG 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692  250 GSTGSTSSgfEKEGKKLDVKKAKSL--DDIKDAINLnVKPNYEHN-VAIVSQTMFAKLDKMKDKLGNYLIQPDVKEKTQQ 326
Cdd:TIGR01554 232 KPKGILTY--AAVGKVVTTGAAGTItaDDLIDLIYS-LDPAYRANaVWVMNRSTLAALRKLKDGNGRYLWQPGLTAGQPA 308
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446772692  327 RLLGAKIEILPDEVLGQKGNNTLIIGNLKDAIVLFDRSQYQASWTDYMHF---GECLMIAVRQDCRILDYKSAIVIE 400
Cdd:TIGR01554 309 TLLGRPVVETEDMPDVAAGAKPILFGDFSRGYLIVDRKGMTIRVLRDPYTekdQVGFRATKRVDGKVVDPEAIKLLK 385
Phage_capsid pfam05065
Phage capsid family; Family of bacteriophage hypothetical proteins and capsid proteins.
135-400 4.28e-43

Phage capsid family; Family of bacteriophage hypothetical proteins and capsid proteins.


Pssm-ID: 428287  Cd Length: 272  Bit Score: 151.76  E-value: 4.28e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692  135 EEIVTDILKLKEVEFNLDKYVTVKRvTNGSGKYPVVRQSEVAALEKVEELEENPELAVKPFFQLAYDINTHRGYFRISRE 214
Cdd:pfam05065   1 PELSTEIIELLREESPIRQLATVIR-TSTSGTVRIPVDTGTAEAGWVGETGAIPETDSPTFGQITLPVHKLAAWVPVSRE 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692  215 AIEDAKVNVLQELKLWMARTIAATRNKAIIDVITKGS--TGSTSSGFEKEGKKLDVKKAKSLDDIKDAINlNVKPNYEHN 292
Cdd:pfam05065  80 LLDDSAIDLEAYLAGRLAEAFARKEDEAFLNGDGDGNqpKGILAASTGAVATGKAAAVTGTADNLIDLIY-SLPAAYRAN 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692  293 VAIV-SQTMFAKLDKMKDKLGNYLIQPDVKEKTQQRLLGAKIEILPDEVL-GQKGNNTLIIGNLKdAIVLFDRSQYQASW 370
Cdd:pfam05065 159 ASFVmNRSTLAALRKLKDADGNYLWQPGLAAGQPATLLGRPVVESEDMVAaGAKPTGDILFGDFS-AYIIVDRGGLEIKR 237
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 446772692  371 TDYMHFG-----ECLMIAVRQDCRILDYKSAIVIE 400
Cdd:pfam05065 238 LRDPYSFfekdqVGFRATKRVDGAVVDPEAFKVLK 272
gp36 COG4653
Predicted phage phi-C31 gp36 major capsid-like protein [Mobilome: prophages, transposons];
109-365 1.12e-17

Predicted phage phi-C31 gp36 major capsid-like protein [Mobilome: prophages, transposons];


Pssm-ID: 443691  Cd Length: 304  Bit Score: 83.00  E-value: 1.12e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692 109 FTEYLETRNDIQGGSLK-------TDSGFVViPEEIVTDILKlKEVEFN-LDKYVTVKRVTNGSGKYPVVRQSEVAALek 180
Cdd:COG4653    3 FGAYLRRGDARLREEAKalstgtdADGGYLV-PPEFANEIIE-ALKEYSpIRQLARVITTSSGSYKIPVSTTGPTAGW-- 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692 181 VEELEENPELAVKpFFQLAYDINTHRGYFRISREAIEDAKVNVLQELKLWMARTIAATRNKAIIdvitKGsTGS------ 254
Cdd:COG4653   79 VGEGAARETSTPT-FGQVTLPAHELYALPKVSQELLDDSAFDLEAWLAEELAEAFARAEEAAFV----NG-DGTgkpkgi 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692 255 -TSSGFEKEGKKLDVKKAKSLDDIKDAINlNVKPNYEHNVAIV-SQTMFAKLDKMKDKLGNYLIQPDVKEKTQQRLLGAK 332
Cdd:COG4653  153 lTYATVAAGTVAAGAAGAITADDLIDLIY-SLKAAYRANAVWVmNDSTLAAIRKLKDGNGRYLWQPGLAAGQPATLLGYP 231
                        250       260       270
                 ....*....|....*....|....*....|....
gi 446772692 333 IEILPD-EVLGqKGNNTLIIGNLKDAIVLFDRSQ 365
Cdd:COG4653  232 VVESEDmPDIA-AGAKPIAFGDFSRGYLIVDRQG 264
PTZ00423 PTZ00423
glideosome-associated protein 45; Provisional
32-161 2.70e-03

glideosome-associated protein 45; Provisional


Pssm-ID: 240413 [Multi-domain]  Cd Length: 193  Bit Score: 38.94  E-value: 2.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446772692  32 DELEKAEKLEQEITDLRSQIQEK-QEELDKLKEKDGTSEKNPQSVEVNEARTYRNQAN-------INDLGISIQNTKVTS 103
Cdd:PTZ00423  19 DELAEREKLKKEVEEIPEQKPEDiVEELEDQPEEPPEQEEENEEQKPKEEIDYPIQENksfdeknLDDLERSNSDIYSES 98
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 446772692 104 QEVRDFTEYLETRNDIqggSLKTDSgfvvipEEIVTDILKLKEVEFNLDKYVTVKRVT 161
Cdd:PTZ00423  99 HKYDNASDKLETGSQL---TLSTDA------TGIVQQVTKLSEPAHEESIYNTYKSVT 147
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
4-64 6.26e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 38.66  E-value: 6.26e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446772692   4 KEELQSEISDIKRQIDlkvkyATRALNNDELEKAEKLEQEITDLRSQIQEKQEELDKLKEK 64
Cdd:COG3883   32 LEAAQAELDALQAELE-----ELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREE 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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