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Conserved domains on  [gi|446755545|ref|WP_000832801|]
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MULTISPECIES: DNA uptake porin HofQ [Salmonella]

Protein Classification

DNA uptake porin HofQ( domain architecture ID 11484798)

DNA uptake porin HofQ is required for the use of extracellular DNA as a nutrient

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
hofQ PRK10560
outer membrane porin HofQ; Provisional
 38-412 0e+00

outer membrane porin HofQ; Provisional


:

Pssm-ID: 182549 [Multi-domain]  Cd Length: 386  Bit Score: 732.39  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  38 QTLAEQERQNLVVSPDVSGTLSLHLTDVPWKQALQTVVNSAGLVLRQEGNIFHVHSQAWQKEHSARQDAERLRLQANLPL 117
Cdd:PRK10560  12 QALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLILRQEGNILSVHSQAWQNENIARQEAEQARAQANLPL 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 118 ENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEKWVSQMDLPVAQVELAAHIVTINEKSLRE 197
Cdd:PRK10560  92 ENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELAAHIVTINEKSLRE 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 198 LGVKWTLADATQAGAVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277
Cdd:PRK10560 172 LGVKWTLADAQQAGGVGQVTTLGSDLSVATATTRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGET 357
Cdd:PRK10560 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGET 331

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 446755545 358 LALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLVATE 412
Cdd:PRK10560 332 LALGGIFSRKNKSGQDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLVSSE 386
 
Name Accession Description Interval E-value
hofQ PRK10560
outer membrane porin HofQ; Provisional
 38-412 0e+00

outer membrane porin HofQ; Provisional


Pssm-ID: 182549 [Multi-domain]  Cd Length: 386  Bit Score: 732.39  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  38 QTLAEQERQNLVVSPDVSGTLSLHLTDVPWKQALQTVVNSAGLVLRQEGNIFHVHSQAWQKEHSARQDAERLRLQANLPL 117
Cdd:PRK10560  12 QALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLILRQEGNILSVHSQAWQNENIARQEAEQARAQANLPL 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 118 ENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEKWVSQMDLPVAQVELAAHIVTINEKSLRE 197
Cdd:PRK10560  92 ENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELAAHIVTINEKSLRE 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 198 LGVKWTLADATQAGAVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277
Cdd:PRK10560 172 LGVKWTLADAQQAGGVGQVTTLGSDLSVATATTRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGET 357
Cdd:PRK10560 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGET 331

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 446755545 358 LALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLVATE 412
Cdd:PRK10560 332 LALGGIFSRKNKSGQDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLVSSE 386
IV_pilus_PilQ TIGR02515
type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ ...
 38-409 5.78e-162

type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures]


Pssm-ID: 274173 [Multi-domain]  Cd Length: 418  Bit Score: 461.78  E-value: 5.78e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545   38 QTLAEQERQNLVVSPDVSGTLSLHLTDVPWKQALQTVVNSAGLVLRQEGNIFHVHSQAWQKEHSARQDAERLRLQANLPL 117
Cdd:TIGR02515  18 QVIAEFTGLNIVVSDSVQGNITLRLKNVPWDQALDIVLKSKGLDKRRDGNIIYIAPLDELAAQEKDELEAKKQIENLEPL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  118 ENRSISLQYADAAELAK-------AGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEKWVSQMDLPVAQVELAAHIVTI 190
Cdd:TIGR02515  98 QTELIQLNYAKASDIAKvltgvtgGSGGLLSPRGSVTVDPRTNTLIVTDTPENLARIRKLIAELDIPVRQVLIEARIVEA 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  191 NEKSLRELGVKWTLADATQAGAVGDVTTLSS----------------------DLSVAAATSRVGFNIGRIN-GRLLDLE 247
Cdd:TIGR02515 178 TDSFSRELGVRWGITDKNGNGNGTAGGIGGNngttatgaggtgnppfgdnlnvNLATATTAAGISFALGKIGsGRLLDLE 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  248 LSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGeSGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVP 327
Cdd:TIGR02515 258 LSALESEGKGEIISSPRVLTANNKEAKIEQGTEIPYQQTSS-SGATSVEFKEAVLSLEVTPQITPDGRIIMDLLVSKDSP 336

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  328 GQVlQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPR 407
Cdd:TIGR02515 337 GVV-AQAGGGVPAIDKQEINTQVLVKNGETVVIGGIYEQTQTNSEDKVPLLGDIPVLGNLFKKTGKSDEKSELLIFITPR 415


                  ..
gi 446755545  408 LV 409
Cdd:TIGR02515 416 IV 417
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 38-409 1.25e-156

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 453.93  E-value: 1.25e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  38 QTLAEQERQNLVVSPDVSGTLSLHLTDVPWKQALQTVVNSAGLVLRQEGNIFHVHSQAWQKEhSARQDAERLRLQANL-P 116
Cdd:COG4796  177 QLIADFTGLNLVISDSVTGNITLRLKNVPWDQALDIILKAKGLDKRKNGNVLLVAPAEELAA-REKLELEAKQQIEELeP 255

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 117 LENRSISLQYADAAELAK----AGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEKWVSQMDLPVAQVELAAHIVTINE 192
Cdd:COG4796  256 LRTEYIQLNYAKASDLAKllkgQRGSLLSERGSVTVDERTNTLIVRDTPSKLEEIRRLIAKLDIPVRQVLIEARIVEASD 335

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 193 KSLRELGVKWTLAD----------------ATQAGAVGDVTTLSSDLSVAAATSRVGFNIGRI-NGRLLDLELSALEQKQ 255
Cdd:COG4796  336 SFSRELGVRWGGSGangtgnnrggiggslnGTTAGTPLLPDGLNVNLPAANPAGSLGLTLAKLgGGRLLDLELSALEAEG 415

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 256 QLDIIASPRLLASHLQPASIKQGSEIPYQVSSgESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQqad 335
Cdd:COG4796  416 KGEIISSPRVITADQQEASIEQGTEIPYQESS-SSGATSVEFKEAVLSLEVTPQITPDGRIILDLDVSKDSPGETVA--- 491

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446755545 336 GEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409
Cdd:COG4796  492 GGVPAIDTKEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFLGDIPLLGWLFKNTTKTDEKRELLIFITPRIV 565
Secretin pfam00263
Bacterial type II and III secretion system protein;
250-409 2.80e-55

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 179.64  E-value: 2.80e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  250 ALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSS--GESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVP 327
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSttGGTTTTTVEFKDAGLSLKVTPQVTPDGTITLKINPEVSSP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  328 GQVlqqADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPR 407
Cdd:pfam00263  81 DGN---GGNGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELLIFITPR 157


                  ..
gi 446755545  408 LV 409
Cdd:pfam00263 158 IV 159
 
Name Accession Description Interval E-value
hofQ PRK10560
outer membrane porin HofQ; Provisional
 38-412 0e+00

outer membrane porin HofQ; Provisional


Pssm-ID: 182549 [Multi-domain]  Cd Length: 386  Bit Score: 732.39  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  38 QTLAEQERQNLVVSPDVSGTLSLHLTDVPWKQALQTVVNSAGLVLRQEGNIFHVHSQAWQKEHSARQDAERLRLQANLPL 117
Cdd:PRK10560  12 QALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLILRQEGNILSVHSQAWQNENIARQEAEQARAQANLPL 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 118 ENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEKWVSQMDLPVAQVELAAHIVTINEKSLRE 197
Cdd:PRK10560  92 ENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELAAHIVTINEKSLRE 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 198 LGVKWTLADATQAGAVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277
Cdd:PRK10560 172 LGVKWTLADAQQAGGVGQVTTLGSDLSVATATTRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGET 357
Cdd:PRK10560 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGET 331

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 446755545 358 LALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLVATE 412
Cdd:PRK10560 332 LALGGIFSRKNKSGQDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLVSSE 386
hofQ PRK13568
DNA uptake porin HofQ;
38-409 0e+00

DNA uptake porin HofQ;


Pssm-ID: 237430 [Multi-domain]  Cd Length: 381  Bit Score: 513.13  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  38 QTLAEQERQNLVVSPDVSGTLSLHLTDVPWKQALQTVVNSAGLVLRQEGNIFHVHSQAWQKEHSARQDAERLRLQANLPL 117
Cdd:PRK13568   3 QALADYQQLNLVTAPGVGGNLSLRLIEVPWEQALAIILRMGKLSAEREGNVLMVFPEQEIQERQQKTKQQAAPQEQMLPL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 118 ENRSISLQYADAAELAK----AGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEKWVSQMDLPVAQVELAAHIVTINEK 193
Cdd:PRK13568  83 ANLTLTLQYADAEEVADslqsQRGGLLSPRGSVTADKRTNTLLIRDTPAALAQLKNWLIELDLPLQQVQLAAHIVTISSE 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 194 SLRELGVKWTLADATQAGAVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPA 273
Cdd:PRK13568 163 SLQELGVRWGMGEGKQGNTALRINDFNVNLPLPNPAASAGFHLARLGGRLLDLELSALEQENQVDIIASPRLFTSHQQTA 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 274 SIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVK 353
Cdd:PRK13568 243 SIKQGTEIPYTVSSGKSGSTSIEFKEAVLGMEVTPKILRNGRITLKLKISQNMPGRTIKRGEGEMLAIDKQEIQTQVTVK 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 446755545 354 SGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409
Cdd:PRK13568 323 DGETIVLGGIFQQQKRQSVNKVPLLGDIPLLGALFRQDTQQQSRRELVIFITPKLI 378
IV_pilus_PilQ TIGR02515
type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ ...
 38-409 5.78e-162

type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures]


Pssm-ID: 274173 [Multi-domain]  Cd Length: 418  Bit Score: 461.78  E-value: 5.78e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545   38 QTLAEQERQNLVVSPDVSGTLSLHLTDVPWKQALQTVVNSAGLVLRQEGNIFHVHSQAWQKEHSARQDAERLRLQANLPL 117
Cdd:TIGR02515  18 QVIAEFTGLNIVVSDSVQGNITLRLKNVPWDQALDIVLKSKGLDKRRDGNIIYIAPLDELAAQEKDELEAKKQIENLEPL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  118 ENRSISLQYADAAELAK-------AGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEKWVSQMDLPVAQVELAAHIVTI 190
Cdd:TIGR02515  98 QTELIQLNYAKASDIAKvltgvtgGSGGLLSPRGSVTVDPRTNTLIVTDTPENLARIRKLIAELDIPVRQVLIEARIVEA 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  191 NEKSLRELGVKWTLADATQAGAVGDVTTLSS----------------------DLSVAAATSRVGFNIGRIN-GRLLDLE 247
Cdd:TIGR02515 178 TDSFSRELGVRWGITDKNGNGNGTAGGIGGNngttatgaggtgnppfgdnlnvNLATATTAAGISFALGKIGsGRLLDLE 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  248 LSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGeSGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVP 327
Cdd:TIGR02515 258 LSALESEGKGEIISSPRVLTANNKEAKIEQGTEIPYQQTSS-SGATSVEFKEAVLSLEVTPQITPDGRIIMDLLVSKDSP 336

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  328 GQVlQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPR 407
Cdd:TIGR02515 337 GVV-AQAGGGVPAIDKQEINTQVLVKNGETVVIGGIYEQTQTNSEDKVPLLGDIPVLGNLFKKTGKSDEKSELLIFITPR 415


                  ..
gi 446755545  408 LV 409
Cdd:TIGR02515 416 IV 417
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 38-409 1.25e-156

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 453.93  E-value: 1.25e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  38 QTLAEQERQNLVVSPDVSGTLSLHLTDVPWKQALQTVVNSAGLVLRQEGNIFHVHSQAWQKEhSARQDAERLRLQANL-P 116
Cdd:COG4796  177 QLIADFTGLNLVISDSVTGNITLRLKNVPWDQALDIILKAKGLDKRKNGNVLLVAPAEELAA-REKLELEAKQQIEELeP 255

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 117 LENRSISLQYADAAELAK----AGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEKWVSQMDLPVAQVELAAHIVTINE 192
Cdd:COG4796  256 LRTEYIQLNYAKASDLAKllkgQRGSLLSERGSVTVDERTNTLIVRDTPSKLEEIRRLIAKLDIPVRQVLIEARIVEASD 335

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 193 KSLRELGVKWTLAD----------------ATQAGAVGDVTTLSSDLSVAAATSRVGFNIGRI-NGRLLDLELSALEQKQ 255
Cdd:COG4796  336 SFSRELGVRWGGSGangtgnnrggiggslnGTTAGTPLLPDGLNVNLPAANPAGSLGLTLAKLgGGRLLDLELSALEAEG 415

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 256 QLDIIASPRLLASHLQPASIKQGSEIPYQVSSgESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQqad 335
Cdd:COG4796  416 KGEIISSPRVITADQQEASIEQGTEIPYQESS-SSGATSVEFKEAVLSLEVTPQITPDGRIILDLDVSKDSPGETVA--- 491

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446755545 336 GEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409
Cdd:COG4796  492 GGVPAIDTKEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFLGDIPLLGWLFKNTTKTDEKRELLIFITPRIV 565
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 126-409 1.17e-73

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 233.27  E-value: 1.17e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 126 YADAAELAKAGEKLLS--AKGTIMVDKRTNRLLLRDNRAALAELEKWVSQMDLPVAQVELAAHIVTINEKSLRELGVKWT 203
Cdd:COG1450   24 YADAEDLAKVLRSLLGgaAGVSVVADPRTNSLIVRATPEQLREIEELIEQLDVPRRQVLIEAKIVEVSLSDLRELGIDWS 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 204 LADATQAGAVGDVTTLSSDLSVAAATSRvGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 283
Cdd:COG1450  104 ALGGNGGGVNFGGTGSLGSLAAAGSLGG-GLNLGLLGGGNFGALLNALESNGDANVLSSPSILTLNNQEAVIKVGQTVPY 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 284 QVSSGESGAT-----SVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETL 358
Cdd:COG1450  183 VTGSTTTSSTgnpttTIEYVDVGITLKVTPQINEDGTVTLDINPEVSSVTGSTTGGGNGLPTINKREISTTVRVKDGQTV 262

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 446755545 359 ALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409
Cdd:COG1450  263 VLGGLIRDEESESESKVPLLGDIPLLGRLFRSTSKSKEKTELVIFITPTII 313
Secretin pfam00263
Bacterial type II and III secretion system protein;
250-409 2.80e-55

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 179.64  E-value: 2.80e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  250 ALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSS--GESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVP 327
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSttGGTTTTTVEFKDAGLSLKVTPQVTPDGTITLKINPEVSSP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  328 GQVlqqADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPR 407
Cdd:pfam00263  81 DGN---GGNGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELLIFITPR 157


                  ..
gi 446755545  408 LV 409
Cdd:pfam00263 158 IV 159
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 133-409 1.40e-47

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 171.42  E-value: 1.40e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  133 AKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEKWVSQMDLPVAQVELAAHIVTINEKSLRELGVKWTLADATQ--- 209
Cdd:TIGR02517 284 AQAASSASGGSVSGSADKATNSLIITASPQDYKNIRAVIKQLDVRRAQVLVEAIIVEVSLDDALELGVQWLIAGTGGgvn 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  210 -----------AGAVGDVTTLSSDLSVAAATSRVGFNI--GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIK 276
Cdd:TIGR02517 364 fstgspnsgslLGASASAISLGSAGIGLLVTSSSTTSGvgGTGGGPNLGVLLNALKQDTGFNVLSTPSLLTLDNQEAEIN 443

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  277 QGSEIP-----YQVSSGESGAT---SVEFKEAVLGMEVTPTVLQKGRIRLKL--HISQNVPGQVLQQADGevLAIDKQEI 346
Cdd:TIGR02517 444 VGQEVPvltgsYNTGTGGTNANpfnTYQRKDVGIKLKVTPQINEGGTVRLEIyqEVSSVAPTTVGSAASG--PTFNKREI 521

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446755545  347 ETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409
Cdd:TIGR02517 522 KTVVLVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGWLFRSTTTERTKTNLMVFITPRII 584
CpaC COG4964
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ...
 180-409 2.52e-47

Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443990 [Multi-domain]  Cd Length: 456  Bit Score: 167.74  E-value: 2.52e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 180 QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVT--TLSSDLSVAAATSRVGFNIGRINgrlLDLELSALEQKQQL 257
Cdd:COG4964  176 QVMLKVRVAEVSRSVLKQLGINWSGLGSSGGFSFGLLTggLLSGLLGGATAGAFSGFGFGNAS---ISATLDALEQNGLA 252

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 258 DIIASPRLLASHLQPASIKQGSEIPYQVSSGeSGATSVEFKEAVLGMEVTPTVLQKGRIRLKLH--ISQNVPGQVLQQAD 335
Cdd:COG4964  253 RVLAEPNLTALSGETASFLAGGEFPIPVAQG-DGTITVEYKEFGVSLNFTPTVLSNGRISLKVApeVSELDPSNAVTLNG 331

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446755545 336 GEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409
Cdd:COG4964  332 ITIPGLTTRRAETTVELRSGQSFAIAGLLSSNTRQNVSKVPGLGDIPILGALFRSRSFQRNETELVIIVTPYLV 405
IV PHA00019
phage assembly protein
 41-409 1.63e-45

phage assembly protein


Pssm-ID: 222772 [Multi-domain]  Cd Length: 428  Bit Score: 162.68  E-value: 1.63e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  41 AEQERQNLVVSPDVSGTLSLH---LTDVPWKQALQTVVNSAGLVLRQEGNIFHVHSQAWQKEHSARQDAERLRL------ 111
Cdd:PHA00019  41 SQQTGKSVVLGPDVKGNVTVYsadVNPANLPQFFDSVLRANGFDLVAGGPAVVIKQNPNQEDYADDLRDSRDDVfydnsv 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 112 -----QANLPLENRSISLQYADAAE---LAKAGEKLLSAKGTIM-VDKRTNRLLLRDNRAALAELEKWVSQMDLPVAQVE 182
Cdd:PHA00019 121 psgapEVPNDLIVRTFNINNVRASDllpLVKIFVKSNGAPGGSVtDLPGTNSLVVSGSASQLPALADFISAIDVPRRQVL 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 183 LAAHIVtinEKSLRElGVKWTLADATQAG---AVG-DVTTLSSDLSVAaatsrvGFNIGRINGRLLDLELSALEQKQQLD 258
Cdd:PHA00019 201 IEALIF---ETSLGD-GVDLSFAAGLASGgkvAGGfNTARLTTVLSSA------GGSFGIFNGNVLGLSVKALENSSNSR 270

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 259 IIASPRLLASHLQPASIKQGSEIPYQVS-------SGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVL 331
Cdd:PHA00019 271 VLSRPRILTLSGQSGYISVGQNVPFVTGrvtgeaaNVNNPFQTIERKDVGVSLEVTPVVMGDGQLVLDIDTKADSLSDST 350

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446755545 332 QQADgevLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409
Cdd:PHA00019 351 IASD---IITNQRSLQTTVQVKDGQTLLLGGLISSNNTDGDSSVPFLSKIPLIGWLFRSKSDSNEQRTLYVLLTARVI 425
type_III_yscC TIGR02516
type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to ...
 135-409 9.19e-39

type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to the type IV pilus secretin PilQ (TIGR02515) are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). The clade described by this model contains the outer membrane pore proteins of bacterial type III secretion systems, typified by YscC for animal pathogens and HrcC for plant pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274174 [Multi-domain]  Cd Length: 462  Bit Score: 144.83  E-value: 9.19e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  135 AGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEKWVSQMDLPVAQVELAAHIVTINEKSLRELGVKWtladatQAGAVG 214
Cdd:TIGR02516 190 AGGGRASASPKISADPRTNAVLIRDRPERMAIYEQLIQQLDVPPRLIEISAWIIDIDASDLSQLGVDW------QATLGA 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  215 DVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSsgesGATS 294
Cdd:TIGR02516 264 GDRQTGFNVSAGAGLGATGSSIVTSDGDYFMARVNALEQTGKAKIVSRPSVLTLENVQAVLDNNRTFYVKVS----GERV 339

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  295 VEFKEAVLG--MEVTPTVLQ----KGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKN 368
Cdd:TIGR02516 340 ADLESVTAGtsLRVTPRVIGdegaQRQIKLNVDIEDGQQKTDGTSTVDALPEIKRTEINTQARVGHGQSLLIGGYYRDES 419

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 446755545  369 KSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409
Cdd:TIGR02516 420 ADSVDGIPLLGDIPLLGNLFRSTSKEKSRVVRLFLITPKIV 460
pilus_MshL TIGR02519
pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, ...
 146-409 9.25e-33

pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, that is, outer membrane pore proteins associated with delivery of proteins from periplasm to the outside of the cell. Related families include GspD of type II secretion (TIGR02517), the YscC/HrcC family from type III secretion (TIGR02516), and the PilQ secretin of type IV pilus formation (TIGR02515). Members of this family are found in gene clusters associated with MSHA (mannose-sensitive hemagglutinin) and related pili, and appear to be the secretin of this pilus system. [Cell envelope, Surface structures]


Pssm-ID: 274176 [Multi-domain]  Cd Length: 290  Bit Score: 124.80  E-value: 9.25e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  146 IMVDKRTNRLLLRDNRAALAELEKWVSQ-MDLPVAQVELAAHI--VTINEKSlrELGVKWTLADATQAG-------AVGD 215
Cdd:TIGR02519   1 YIINPEAGLLTVTATPAQIRRVEEYLESlQERIHRQVLIEAKIleVTLSDNH--QQGIDWSNFNGSGLArykalgaANSN 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  216 VTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSS----GESG 291
Cdd:TIGR02519  79 DSSGNQFSSGLGFLDNIGLPTGVNSGFGFDSIINFLATFGDTKVLSNPKVMALNNQPAVISVGDNIRYVTEEsstgTTGG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545  292 ATSVEFKEAV-------LGMEVTPTVLQKGRIRLKLH-----ISQNVPGQVLQQADGEVLA--IDKQEIETQVEVKSGET 357
Cdd:TIGR02519 159 TTSTASSDTRvdsvfsgIVLGVTPQISDDGKVILNVHpsiseVKPQSIDLNPVGNGAEVALpeISVKEMSSVLRVKDGDT 238

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 446755545  358 LALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409
Cdd:TIGR02519 239 VVLGGLIDKKKSNTKTGLPFLGDIPGLGYLFGYKSKSKKKTELVIIIRPSVV 290
PRK15346 PRK15346
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
149-394 1.05e-16

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237950 [Multi-domain]  Cd Length: 499  Bit Score: 81.66  E-value: 1.05e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 149 DKRTNRLLLRDNRAALAELEKWVSQMDLPVAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVgdvttlsSDLSVAAA 228
Cdd:PRK15346 241 DPRQNAVIVRDRAANMAIYRSLITQLDQRPQMIEISVSIIDVDAGDINQLGIDWSASASLGGGKI-------SFNSGFAD 313

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 229 TSRVGFN--IGRINGRLLdlELSALEQKQQLDIIASPRLLA-SHLQPASIK--------QGSEIPyQVSSGESGATsvef 297
Cdd:PRK15346 314 GNASGFStvISNTGNFMV--RLNALEKNSKAKILSQPSVVTlNNIQAVLDKnvtfytklQGEKVA-KLESITTGSL---- 386

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 298 keavlgMEVTPTVLQKG---RIRLKLHISQNVPGQVLQQADgEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDS 374
Cdd:PRK15346 387 ------LRVTPRLIDDNgtqKVMLNLNIQDGQQSATQSETD-PLPEVQNSEIATQATLKAGQSLLLGGFIQDKQIESQNK 459

                        250       260
                 ....*....|....*....|
gi 446755545 375 VPLLGDIPWLGQLFRHDGKE 394
Cdd:PRK15346 460 IPLLGDIPLIGGLFRSTDKQ 479
PRK15339 PRK15339
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
152-407 4.26e-15

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237948 [Multi-domain]  Cd Length: 559  Bit Score: 77.12  E-value: 4.26e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 152 TNRLLLRDNRAALAELEKWVSQMDLPVAQVELAAHIVTINEKSLRELGVKWtladatQAGAvgdvtTLSSDLSVAAATSr 231
Cdd:PRK15339 274 TNSLLVKGTAEQVHFIEMLVKALDVAKRHVELSLWIIDLDKSDLEQLGVNW------SGSI-----TIGDKLGVSLNQS- 341

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 232 vgfNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPAsIKQGSEIPYQVSSGESgatSVEFKEAVLG--MEVTPT 309
Cdd:PRK15339 342 ---SISTLDGSRFIAAVMALEQKKKANVVSRPVVLTQENIPA-IFDNNRTFYTKLVGER---NVALEHVTYGtmISVLPR 414

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446755545 310 VLQKGRIRLKLHI---SQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQ 386
Cdd:PRK15339 415 FSADGQIEMSLDIedgNEKTPQSDTTTSVDALPEVGRTLISTIARVPQGKSLLIGGYTRDANTDEVQSIPFLGSLPLIGS 494

                        250       260
                 ....*....|....*....|.
gi 446755545 387 LFRHDGKEDERRELVVFITPR 407
Cdd:PRK15339 495 LFRYSSKNKSNIVRVFLIEPR 515
Secretin_N pfam03958
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ...
 120-180 1.99e-09

Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.


Pssm-ID: 461109 [Multi-domain]  Cd Length: 68  Bit Score: 53.37  E-value: 1.99e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446755545  120 RSISLQYADAAELAKA------GEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEKWVSQMDLPVAQ 180
Cdd:pfam03958   2 RVIPLKYASAEDLASAlrsllgGSGLLSKRGSVVADPRTNSLIVSGPPEYVELVRQLIKQLDVPRAQ 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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